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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
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Author
2015-03-18
Some more minor code/comment updates, making code a little shorter
DannyArends
2015-03-18
Cleaning up some of the code, updating output and adding/changing comments
DannyArends
2015-03-17
Added r function for setting genotypes and generating the cross file
zsloan
2015-03-17
Moved print statement for non-humans only inside if statement
zsloan
2015-03-17
Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_test
zsloan
2015-03-17
Added permutations and cleaned code for rqtl
zsloan
2015-03-17
Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001
Pjotr Prins
2015-03-17
Converting an absolute path to a relative path
DannyArends
2015-03-17
Added files for bootstrap icons and scatter-plot css file
Zachary Sloan
2015-03-17
Improved rqtl code
Zachary Sloan
2015-03-17
Moved scatter-plot to the right of options instead of below
Zachary Sloan
2015-03-17
Moved setting of geno variable into non-human
Zachary Sloan
2015-03-14
Threading: Sleep while waiting
Pjotr Prins
2015-03-14
Allow the GC to do its job
Pjotr Prins
2015-03-14
Allow queue to be 2xCPU. Disable output files
Pjotr Prins
2015-03-14
Kinship multi-core: don't overload the queue with jobs
Pjotr Prins
2015-03-14
Parallel K calculation is fixed
Pjotr Prins
2015-03-14
Tests and indentation
Pjotr Prins
2015-03-14
Conditional run of K calculation
Pjotr Prins
2015-03-14
Adding tests
Pjotr Prins
2015-03-14
Adding assertions
Pjotr Prins
2015-03-14
Allow empty K to be passed in
Pjotr Prins
2015-03-14
Removing all references to is_testing
Pjotr Prins
2015-03-14
Working on kinship: GN2 and simple matrix multiplicatino agree
Pjotr Prins
2015-03-14
More MAF
Pjotr Prins
2015-03-14
Replace missing values with MAF
Pjotr Prins
2015-03-14
Testing kinship works on small G
Pjotr Prins
2015-03-14
Merge branch 'zsloan' into dev
Pjotr Prins
2015-03-14
kinship: working on pylmm
Pjotr Prins
2015-03-13
runlmm.py: remove extraneous conversion
Pjotr Prins
2015-03-13
& Refactoring
Pjotr Prins
2015-03-13
& runlmm.py: added assertions for default run
Pjotr Prins
2015-03-12
lmm: use deep-copy to avoid side-effects
Pjotr Prins
2015-03-12
weird fix for lmm result - Python weirdness
Pjotr Prins
2015-03-12
Check G
Pjotr Prins
2015-03-12
Debug info
Pjotr Prins
2015-03-12
process_plink.py: remove unused file
Pjotr Prins
2015-03-12
Combined searches now work for most terms
...
Fixed appearance of the scatterplot matrix Changed pylmm code back because of an error after I had switched to Pjotr's code
Zachary Sloan
2015-03-12
Just committing changes to search so I can pull to production branch
Zachary Sloan
2015-03-11
runlmm.py: message
Pjotr Prins
2015-03-11
Adding multi-core kinship.py
Pjotr Prins
2015-03-11
Merged lmm branch
Pjotr Prins
2015-03-11
lmm.py: change message on running from CLI
Pjotr Prins
2015-03-11
& Added testing option, now the results match
Pjotr Prins
2015-03-10
Normalisation
Pjotr Prins
2015-03-10
lmm.py: debugging output
Pjotr Prins
2015-03-10
Missing genotypes and normalize
Pjotr Prins
2015-03-10
Populationg Redis from TSV data
Pjotr Prins
2015-03-10
Refactored tsvreader out
Pjotr Prins
2015-03-10
Factoring out tsvreaders
Pjotr Prins
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