| Age | Commit message (Expand) | Author |
|---|
| 2022-02-17 | bin: Allow for not starting redis....redis needs to be started and managed as a separate service. We create
a flag NO_REDIS so that it can be so. If NO_REDIS is not defined, the
present behavior of starting redis remains. Thus current use cases are
not broken.
* bin/genenetwork2: Allow for not starting redis with the NO_REDIS
flag.
| Arun Isaac |
| 2022-02-17 | etc: Close VERSION file after opening....Use a context manager so that the VERSION file is automatically closed
on exiting the block.
* etc/default_settings.py: Close VERSION file after opening.
| Arun Isaac |
| 2022-02-14 | Add search text for cis/transLRS/LOD searches...There wasn't any search text for cis/trans searches including both
chromosome and exclusion zone, so I added somee
| zsloan |
| 2022-02-14 | Fix CisTrans search bug...', Geno' was being added to the FROM clause, which is wrong becausee
Geno is included in the query via a JOIN (and caused an error making
those searches not work)
| zsloan |
| 2022-02-09 | doc: Document how to fetch case-attribute data from a sample-list | BonfaceKilz |
| 2022-02-09 | variable naming and docstrings fix | Alexander Kabui |
| 2022-02-09 | handle exceptions | Alexander Kabui |
| 2022-02-09 | autopep8 formatting | Alexander Kabui |
| 2022-02-09 | delete unused js packages | Alexander Kabui |
| 2022-02-09 | autopep8 formatting | Alexander Kabui |
| 2022-02-09 | fix for performing parametric analysis | Alexander Kabui |
| 2022-02-09 | minor template fixes | Alexander Kabui |
| 2022-02-09 | add trait lists and links to ctl plot | Alexander Kabui |
| 2022-02-09 | disabble autoslide | Alexander Kabui |
| 2022-02-09 | fix for ctl ui page | Alexander Kabui |
| 2022-02-09 | endpoint to download network files | Alexander Kabui |
| 2022-02-09 | btn download for network sif and node file | Alexander Kabui |
| 2022-02-09 | modify ctl endpoint | Alexander Kabui |
| 2022-02-09 | minor fixes for images | Alexander Kabui |
| 2022-02-09 | fix for dcor and LOD rounding | Alexander Kabui |
| 2022-02-09 | styling for carousel | Alexander Kabui |
| 2022-02-09 | add carousel for plots | Alexander Kabui |
| 2022-02-09 | ui form modifications | Alexander Kabui |
| 2022-02-09 | minor refactoring to destruct objects | Alexander Kabui |
| 2022-02-09 | template file cleanup | Alexander Kabui |
| 2022-02-09 | rename template file | Alexander Kabui |
| 2022-02-09 | minor bug fixes | Alexander Kabui |
| 2022-02-09 | process significant table results | Alexander Kabui |
| 2022-02-09 | delete class initiliazation object | Alexander Kabui |
| 2022-02-09 | minor refactoring | Alexander Kabui |
| 2022-02-09 | pep8 formatting | Alexander Kabui |
| 2022-02-09 | fetch pheno input data | Alexander Kabui |
| 2022-02-09 | parse geno input data | Alexander Kabui |
| 2022-02-09 | parse input data | Alexander Kabui |
| 2022-02-09 | init py file:call gn3 ctl api | Alexander Kabui |
| 2022-02-09 | add ui template for ctl | Alexander Kabui |
| 2022-02-07 | Double quote shell variables to prevent globbing and word splitting | Frederick Muriuki Muriithi |
| 2022-02-07 | Add 'api' to root of partial correlations URL...Add api to the root of the partial correlations URL, making it:
/api/correlations/partial
rather than:
/correlations/partial
| Frederick Muriuki Muriithi |
| 2022-02-05 | Update live jupyter notebooks | jgart |
| 2022-02-02 | Add covarstruct for rqtl mapping...Added a function for generating a covarstruct file required for R/qtl
mapping
This file contains info on whether each covariate is categorical or
numerical and is generated by querying the TraitMetadata table in the DB
| zsloan |
| 2022-01-31 | wqflask: Use a more semantic name when downloading samples...* wqflask/wqflask/metadata_edits.py (get_sample_data_as_csv): Save csv
file to be downloaded as "sample-name-<dataset_id>.csv" instead of
"myplot.csv"
| BonfaceKilz |
| 2022-01-29 | Fix bug: rho/r not set appropriately...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* The column heading, and the "data-column-heading" values depend on
the correlation method. The initial idea had been to set these
values up from the server.
With the use of Javascript, however, the system defaults to using
`r`, which is a bug when the method is any of the Spearman's
methods.
| Frederick Muriuki Muriithi |
| 2022-01-29 | Include the "Locus" in the display...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
| Frederick Muriuki Muriithi |
| 2022-01-29 | Provide missing argument...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
| Frederick Muriuki Muriithi |
| 2022-01-29 | Fix check for non-existent values | Frederick Muriuki Muriithi |
| 2022-01-29 | Hide template row instead of deleting it | Frederick Muriuki Muriithi |
| 2022-01-29 | Add more items to trait string...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
| Frederick Muriuki Muriithi |
| 2022-01-29 | Update styling: Display traits in a tabular-like form...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Display the trait details in a tabular-life form without using a table.
| Frederick Muriuki Muriithi |
| 2022-01-29 | Include template to get rid of repetitive template code...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* The generation of input elements that relate to the traits is very
similar, therefore this commit pulls it out into a separate template
that can be included where needed.
| Frederick Muriuki Muriithi |
| 2022-01-29 | Display results for Geno and ProbeSet tables...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* Add function to display the results for the **Geno**
and **ProbeSet** tables.
| Frederick Muriuki Muriithi |
