| Age | Commit message (Expand) | Author |
|---|
| 2015-09-08 | Fixed covariates with R/qtl mapping...A few minor GUI changes on trait page (button names, locations, etc)
Fixed "pressing enter to search" on index page
| zsloan |
| 2015-09-01 | Fixed issue that caused R/qtl mapping to not work...Removed bootstrap and additive effect options until I can get them working correctly
| zsloan |
| 2015-09-01 | Fixed color by trait feature...Added Y axis line to bar histogram
Added link to GN1 in menu bar
Fixed mapping results table to look more like other tables (though still has initial issue with header being too short)
Added Tissue to global search results and trait page
| zsloan |
| 2015-08-26 | Fixed issue with colums for the gene global search (still need to change for ......Fixed issue where LRS and LOD are sometimes labeled incorrectly
Changed the header of the trait page
Added link to GN1 in header
Fixxed an issue that made permutations not work with pylmm
Fixed "sign in" button when creating a collection while not logged in
| zsloan |
| 2015-08-14 | Added csv download button to search result table; still need to add to other...tables and later attach its functionality to the existing Download Table button
Fixed an issue where rows wouldn't uncheck with backspacing in Select Top text area;
the last commit just fixed the highlighting, not the checkboxes
Some changes in progress towards trying to fix the additive effect issue; the problem is
that the lod_chart.js code writes each chromosome as one d3 path, so I can't change the color
for individual segments within that path. I'll have to completely change the way
the path is drawn for the additive effect
| zsloan |
| 2015-08-12 | Made Select Top function more intuitively and changed the text box length | zsloan |
| 2015-08-12 | Fixed global and regular search so that resizing/reordering columns works for... | zsloan |
| 2015-08-11 | Highlighting works for all trait selection options (select all, invert, selec......Search table and Select Top options added to global and regular search pages
| zsloan |
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-08-04 | Fixed additive effect for lodchart...Made some more changes/improvements to various tables throughout the site
| zsloan |
| 2015-07-31 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-29 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-28 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan |
| 2015-07-27 | Committing a few more changes to tables before pulling Lei's global search up... | zsloan |
| 2015-07-24 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-23 | Merge /home/zas1024/gene | Lei Yan |
| 2015-07-23 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-23 | Committing most recent changes to tables so Lei can pull; still have a few mo... | zsloan |
| 2015-07-20 | Missed commenting out a line in collections/list | zsloan |
| 2015-07-20 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2015-07-20 | Fixed the code that generates the dataset selection drop-down for correlations...Made changes to the tables of correlation results, collections, and search results:
- Added resizeable columns to correlation results and collections, but not to search results
because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling
to the search results)
- Correlation results and collections are now in scrolling tables
- The style is the same across all of these tables now
Remaining issues:
- It doesn't seem like I can set the column width when initializing dataTables in
correlation results. I don't know why this is; it might be due to the table already being the size
of a full page. I want to be able to default to some good widths, even if the user can resize them
- I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is
due to having to put the text in a div.
| zsloan |
| 2015-07-17 | Merge pull request #97 from lyan6/master...Committer: Lei Yan <lei@penguin.uthsc.edu> | zsloan |
| 2015-07-17 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan |
| 2015-07-16 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-15 | Fixed issue where chromosome view doesn't work on qtlreaper mapping results | zsloan |
| 2015-07-15 | Fixed some of the javascript after pulling Lei's changes to the search table | zsloan |
| 2015-07-15 | Small mistake during last merge; forgot to change if to elif in template | zsloan |
| 2015-07-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2...Conflicts:
wqflask/wqflask/templates/search_result_page.html
| zsloan |
| 2015-07-15 | Cursor doesn't change when hovering over index column header now | zsloan |
| 2015-07-15 | Merge pull request #94 from lyan6/master...Committer: Lei Yan <lei@penguin.uthsc.edu> | zsloan |
| 2015-07-15 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2015-07-10 | Merge /home/lei/gene | zsloan |
| 2015-07-10 | Fixed the genofile_parser.py script since some .geno files had been incorrect......Fixed GO search to work with combined searches
| zsloan |
| 2015-07-10 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan |
| 2015-07-10 | On branch master | Lei Yan |
| 2015-07-10 | On branch master | Lei Yan |
| 2015-07-10 | Added an OR ("Get Any") search to the index page...Fixed several issues with existing searches; for example, the user can type "Chr" before the chromosome parameter (for example LRS=(9 999 Chr2 100 105) )
| zsloan |
| 2015-07-09 | Added a temporary fix to prevent .geno requiring mapping methods from appeari... | zsloan |
| 2015-07-09 | Forgot to add one change to the last commit | zsloan |
| 2015-07-09 | Mapping methods now check for existing genotype files....Currently we still usually get our samplelists from the genofile. This is
dumb because it results in us having a bunch of "dummy" genofiles for certain
data sets (seems to be mostly human ones). This means that checking for the
genofile alone isn't enough to determine if a mapping method should exist
for a given group
I wrote some code that will instead get the samplelist from the plink .fam file
for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy
.geno files, but we can't yet do so because it's currently the only place we seem to be storing
the sample list for some groups.
I also moved gemma into the plink directory to get it out of the git tree.
Since it uses the same files as plink, it doesn't make sense for it
to be in its own separate directory
| zsloan |
| 2015-07-09 | Some phenotype searches were throwing an error due to an assert statement in ... | zsloan |
| 2015-07-07 | Updated mirror/development sites and changed font color in form control emements | zsloan |
| 2015-07-07 | Also added index column to collections | zsloan |
| 2015-07-07 | Added index column and changed the way location is displayed for search results | zsloan |
| 2015-07-06 | Forgot to add the search error page template | zsloan |
| 2015-07-06 | An error page should be loaded if the user uses a nonexistent search term, in... | zsloan |
| 2015-07-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2015-07-02 | Merge pull request #81 from lomereiter/fix_exporting...Fix SVG/PDF exporting | zsloan |
