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2016-06-07R/qtl pair scan now works again, though it takes a while (10-15 minutes).zsloan
Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc)
2016-06-03Made a bunch of changes to correlation and search result tables (mainly the ↵zsloan
former) and made all tables a little more compact by lessenning the padding
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ↵zsloan
of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
2016-06-02Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2016-06-02Fixed some issues with global search result tables, including:zsloan
- Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js
2016-06-02Paper: addressing JOSS requirements for contribution, where to findPjotr Prins
documentation and testing materials https://github.com/openjournals/joss-reviews/issues/25
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
last par: "Python" is spelled with a capital 'P'
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
2nd par: "can be found in ___ guix-bioinformatics", please insert 'the article', 'the package', 'the lab fridge labeled'.. whichever is aproppriate ;-)
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25Pjotr Prins
1st par: "experimental data" could be fleshed out in 2-3 words for the biologist reader (is it SNPs, microarray data, NGS, Y2H or manually counted individuals?)
2016-06-01Changed global gene search to no longer use server-side processingzsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
2016-05-31Merge branch 'master' of github.com:genenetwork/genenetwork2Pjotr Prins
2016-05-31Renamed TEXTDIR to GENERATED_TEXT_DIRPjotr Prins
2016-05-31Allow the json dir to be in the old location.Pjotr Prins
2016-05-30Merge pull request #163 from DannyArends/masterPjotr Prins
Fixing my affiliation
2016-05-30Consistency in the orchid IDsDannyArends
2016-05-30Removing paper.json (unneeded)DannyArends
2016-05-30Fixing my affiliationDannyArends
2016-05-30Merge pull request #162 from arfon/patch-1Pjotr Prins
Fixing paper metadata
2016-05-29Fixing paper metadataArfon Smith
2016-05-29JOSS: add symlinkPjotr Prins
2016-05-29Updated webserver linkPjotr Prins
2016-05-29CitationPjotr Prins
2016-05-29Merge branch 'master' of github.com:genenetwork/genenetwork2Pjotr Prins
2016-05-29docs: fix conflictPjotr Prins
2016-05-29Add zenodo doiPjotr Prins
2016-05-29JOSS: add MQM citation and fix typov2.0Pjotr Prins
2016-05-29Merge branch 'rebase' into stagingPjotr Prins
2016-05-29Added JOSS paperPjotr Prins
2016-05-27Fixed issue where the Non-BXD (or whatever group/inbred set) table would ↵zsloan
show up when there should be no such samples Fixed Interquartile Range link in basic statistics table
2016-05-27Improved appearance of p values below slider in correlation menu on trait ↵zsloan
page. The way I did it is really awful (a bunch of  's) but nothing else seemed to work, including putting a div or span with a fixed width between them
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-26Issue with certain samples (like BXD65a, ones were there are multiple for a ↵zsloan
single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets
2016-05-25Docs: database reverse engineeringPjotr Prins
2016-05-25Docs: database reverse engineeringPjotr Prins
2016-05-24Docs: phenotypesPjotr Prins
2016-05-23Reaper mapping results are now correct and account for samples with two ↵zsloan
names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
2016-05-18Merge branch 'staging' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-18Updated dataset selection dropdown menus and fixed error caused by traits ↵zsloan
with no description
2016-05-18Fix conflictPjotr Prins
2016-05-18Merge pull request #3 from Brainiarc7/patch-3Pjotr Prins
Notes: We need to test some fields in the results page
2016-05-18Merge pull request #2 from Brainiarc7/patch-2Pjotr Prins
Added a new Navigation Test suite
2016-05-18Docs: DBPjotr Prins
2016-05-18tests: removed empty linesPjotr Prins
2016-05-18Notes: We need to test some fields in the results pageDennis E. Mungai
Not yet implemented. WIP. Expected: Run all ~250 fields.
2016-05-18Added a new Navigation Test suite Dennis E. Mungai
A new option for running the script is now available. See the output of ./test-website -n for usage.
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2zsloan
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