genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2021-10-25	Remove dead line	BonfaceKilz

2021-10-25	manage_resource.html: Display group name next to it's unique id	BonfaceKilz

2021-10-25	manage_resource.html: If owner owns a resource display their name	BonfaceKilz

2021-10-25	manage_resource.html: Remove "flash"	BonfaceKilz

2021-10-25	utility.hmac: Label "hmac_creation" as deprecated	BonfaceKilz
	This function is coupled to "wqflask.app", therefore requiring it's import at the module level. This may lead circular importation issues when working with blueprints.
2021-10-25	decorators: Add `@login_required` decorator	BonfaceKilz

2021-10-25	Remove "utility.hmac.hmac_creation" which causes circular imports	BonfaceKilz
	Hacky but re-implement `hmac_creation` as `create_hmac`
2021-10-25	Replace "resource_id" with "resource_info" dict	BonfaceKilz
	This avoids calling Redis twice when fetching metadata about the resource.
2021-10-25	Get a users access mask	BonfaceKilz
	If a user has several access roles, select the highest role.
2021-10-25	Add immutable data structures for admin and data access roles	BonfaceKilz

2021-10-25	resource_manager: Add OrderedEnum	BonfaceKilz
	Borrowed from: <https://github.com/woodruffw/ordered_enum/tree/master/src/ordered_enum>
2021-10-25	resource_manager: Add `get_user_membership` method	BonfaceKilz

2021-10-25	resource_manager: Delete every route & helper method in this module	BonfaceKilz
	This module is coupled to `utility.redis_tools` which needs to be deprecated. Also, the routes are created by importing `app` instead of creating a new blueprint.
2021-10-25	Add test-cases for `get_user_membership`	BonfaceKilz

2021-10-25	Mark `get_resource_info` as deprecated	BonfaceKilz

2021-10-25	Add default setting for REDIS_URL	BonfaceKilz

2021-10-25	Move markdown_routes to api/markdown	BonfaceKilz
	All new API definitions should be migrated to "wqflask/ api"
2021-10-25	api: correlation: Delete unused imports	BonfaceKilz

2021-10-25	api: correlation: Delete unused logger	BonfaceKilz

2021-10-22	Include the admin privilege for the 'editors' group, since it wasn't being ↵	zsloan
	set before (which caused some problems)
2021-10-22	Fix line pulling GN3_LOCAL_URL from settings	zsloan

2021-10-22	Replace hardcoded GN proxy URLs in trait.py with one pulled from settings	zsloan

2021-10-22	Replace hardcoded GN proxy URL in decorators.py with one pulled from settings	zsloan

2021-10-22	Replace hardcoded GN proxy URLs with one pulled from settings	zsloan

2021-10-22	Replace hardcoded GN3 RQTL URL	zsloan

2021-10-22	Added proxy and local GN3 URLs in tools.py (which should be set in the ↵	zsloan
	settings file)
2021-10-22	Add NSF award	Pjotr Prins

2021-10-22	Updated funding and credits	Pjotr Prins

2021-10-22	Possible fix for the weird inconsistent correlation key error for strain ↵	zsloan
	BXD073bxBXD077F1
2021-10-19	Fixes issue with the bytes encoding being included in the string for ↵	zsloan
	ProbeSet trait descriptions on the search result page
2021-10-19	Fixed some errors/logic for search results related to how the name/display ↵	zsloan
	name was being set
2021-10-19	Fixed bug where the record ID for ProbeSet traits wasn't being pulled from ↵	zsloan
	the correct position in the query results
2021-10-19	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2021-10-19	Fixed heatmap URL in view_collection	zsloan

2021-10-18	Merge pull request #557 from zsloan/feature/remove_trait_creation_from_search	zsloan
	Feature/remove trait creation from search
2021-10-18	Fixed the way group code was used when setting phenotype trait display name ↵	zsloan
	+ prevent encoding error with try/except
2021-10-18	Changed table width to 100% for non-Geno datasets, since it can always be ↵	zsloan
	manually resized
2021-10-18	Replace this_trait.dataset.type with just self.dataset.type	zsloan

2021-10-18	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	feature/remove_trait_creation_from_search
2021-10-18	Merge pull request #562 from zsloan/feature/add_resizeable_columns	zsloan
	Add Resizeable Table Columns
2021-10-14	Merge pull request #605 from genenetwork/clustered_heatmaps	BonfaceKilz
	Clustered heatmaps
2021-10-14	Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcna	BonfaceKilz
	test template for gn3 wgcna
2021-10-13	Fix issue where score_type being set wrong caused an error when exporting ↵	zsloan
	mapping results (a while back it was changed from LOD to -logP)
2021-10-13	Add some documentation for generating heatmaps	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user.
2021-10-13	Update the action button text	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers.
2021-10-13	resolve merge conflict	Alexander Kabui

2021-10-13	disable heatmap image	Alexander Kabui

2021-10-12	Merge branch 'testing' into feature/add_resizeable_columns	zsloan

2021-10-12	Fixed export_mapping_results test in test_run_mapping.py	zsloan

2021-10-12	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	Frederick Muriuki Muriithi
	clustered_heatmaps