aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2022-05-27Narrow the case-attribute columnBonfaceKilz
2022-05-27Add extra sections for displaying delete/insert dataBonfaceKilz
2022-05-27Fetch diff data from SQL...* wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Replace the redis fetch with SQL for retrieving diff data. BonfaceKilz
2022-05-27POST deletionsBonfaceKilz
2022-05-27POST new insertsBonfaceKilz
2022-05-27Delete buggy js line...This generates a js error in the console log. BonfaceKilz
2022-05-27Put the correct class names when appending the name & desc. fieldsBonfaceKilz
2022-05-27Add js logic to make a POST request on Deletion...* wqflask/wqflask/templates/case_attributes.html: When deleting a case-attribute, make a POST request. BonfaceKilz
2022-05-27Store the data in SQL instead of Redis...* wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Store the diff data on a POST in SQL. BonfaceKilz
2022-05-27Require edit rights to access the case-attributes page...* wqflask/wqflask/metadata_edits.py (update_case_attributes): Add "login_required" and "edit_admins_access_required" decorators. BonfaceKilz
2022-05-27Display diffs from editing in a nice table.BonfaceKilz
2022-05-27Remove case-attributes list from the metadata edit page...* wqflask/wqflask/metadata_edits.py (display_phenotype_metadata): Delete "headers" variable when passing it to the template. *wqflask/wqflask/templates/edit_phenotype.html: Remove special not that lists the case-attributes with their IDs in brackets. BonfaceKilz
2022-05-27Save diffed data to redis (wip)...* wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): pass the diff'ed data to the template (update_case_attributes): New function. Parses data from JS and saves it redis in "case-attr-diffs:review" * wqflask/wqflask/templates/case_attributes.html: Make post request---to save the data to redis for approval. BonfaceKilz
2022-05-27Make a POST request on data edit...* wqflask/wqflask/metadata_edits.py: When editing a case-attribute, make a post request to the relevant end-point. BonfaceKilz
2022-05-27Parse case attributes as a tuple, not as a dict...* wqflask/wqflask/metadata_edits.py (approve_data): Return the fetched case_attributes as is. * wqflask/wqflask/templates/case_attributes.html: Parse the case attributes as a tuple. BonfaceKilz
2022-05-27Update case-attributes page to make it editableBonfaceKilz
2022-05-27Fix the url to the GN3 serverFrederick Muriuki Muriithi
2022-05-27Display correlation computation errors correctly...- Display any correlation computation errors in a form that tells the user what they did wrong. Frederick Muriuki Muriithi
2022-05-27Fix UI Errors...- Display index correctly - Move checkbox element to the table body - Make progress indicator prominent Frederick Muriuki Muriithi
2022-05-26Enumerate rows and add checkboxesFrederick Muriuki Muriithi
2022-05-26Fetch the menu data from GN3Frederick Muriuki Muriithi
2022-05-26Indicate error if system in unable to fetch menuFrederick Muriuki Muriithi
2022-05-25Add 'submit' class to Submit button when selecting cofactors...This was mistakenly removed with a recent change and caused cofactors selection to stop working zsloan
2022-05-24Handle async results. Reduce poll time....Handle asynchronous results for partial correlation against a select number of traits. Reduce the polling time from 10 seconds to 5 seconds Frederick Muriuki Muriithi
2022-05-19Change Pca to PCAzsloan
2022-05-17Make collection page tools open in new tab/windowzsloan
2022-05-17Include relevant CSS files in correlation scatterplot page to improve covaria...zsloan
2022-05-17Change collection table in get_covariates_from_collection to be the same as i...zsloan
2022-05-17Remove the Delete Collection option from the view collection page and...rename Delete Rows to just Remove zsloan
2022-05-16Check for queued results explicitly...Rather than checking the status field, check for the queued field instead and only display the 'in progress' indicator when the computation has been queued for later. Frederick Muriuki Muriithi
2022-05-16Fix errors: with_target_db and target_traits issues...- Ensure the 'with_target_db' value is set up correctly when sending request to GN3 API - Set up empty target traits list in case none has been provided Frederick Muriuki Muriithi
2022-05-10Ignore metadata when importing collection filezsloan
2022-05-10Add metadata to collection export filezsloan
2022-05-10Add user email to form so it can be included in collection export metadatazsloan
2022-05-10Add rest of JS/Python code for importing collections from fileszsloan
2022-05-10Export trait string in original format...Previously I was splitting by colon to make it comma-delimited, but this is pointless since this file is going to be reformatted with the colons after being imported zsloan
2022-05-10Create import_collection functionzsloan
2022-05-10Add button for collection import and JS for submitting formzsloan
2022-05-10Display user email on collection list page when user_name doesn't existzsloan
2022-05-10Refactor JS code for exports somezsloan
2022-05-10Fix the way the collection name is stored in the formzsloan
2022-05-10Add collection export function/endpointzsloan
2022-05-10Change export_search_results_csv to export_traits_csv since it's more accuratezsloan
2022-05-10Add JS for submitting collection export...Also refactor the way the exports and BNW submission are done zsloan
2022-05-10Add button for new collection exportzsloan
2022-05-06Compute pcorrs with selected target traits...Modify the code to request computation of partial correlations with selected traits rather than a complete dataset. Frederick Muriuki Muriithi
2022-05-06Add UI for partial correlation against selected targetsFrederick Muriuki Muriithi
2022-05-06Make the results table dataTable classFrederick Muriuki Muriithi
2022-05-06Display the trait name in the header during editsBonfaceKilz
2022-05-06Move "Update History" to it's own page...* wqflask/wqflask/metadata_edits.py (edit_phenotype): Move the logic for fetching the diff data from here to... (show_history): ... here. * wqflask/wqflask/templates/edit_phenotype.html: Move html section for displaying recent edits from here to ... * wqflask/wqflask/templates/edit_history.html: ... here. BonfaceKilz