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2016-05-13Merge branch 'staging' of github.com:pjotrp/genenetwork2 into stagingPjotr Prins
2016-05-13README: nginx configuration as reverse proxyPjotr Prins
2016-05-13Fix paths for imagesPjotr Prins
2016-05-13Nginx configurationPjotr Prins
2016-05-13Added IRC logPjotr Prins
2016-05-13Added IRC logPjotr Prins
2016-05-11README: nginxPjotr Prins
2016-05-11nginx: add README infoPjotr Prins
2016-05-11Nginx configuration examplePjotr Prins
2016-05-10Merge branch 'master' of github.com:genenetwork/genenetwork2 into merge_zachPjotr Prins
2016-04-29Fixed database link in trait page detailszsloan
2016-04-29Also fixed links in statistics section (for normal probability plot) and ↵zsloan
removed 'target=_blank's
2016-04-29Fixed links in correlation descriptions on trait page and removed ↵zsloan
target=_blank (so will not open in new window unless user specifies) Fixed javascript so description changes when user changes the method and "Type" option is removed for literature correlation
2016-04-29URL: removed _blank from first URLPjotr Prins
2016-04-29README: on missing modulesPjotr Prins
2016-04-29Updated mailing list URLPjotr Prins
2016-04-29Plotting: using cairo-png for headless environmentsPjotr Prins
2016-04-29MergePjotr Prins
2016-04-28Added option to export permutation results for mapping pagezsloan
Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border
2016-04-28READMEPjotr Prins
2016-04-28Test: splitting out static URL testsPjotr Prins
2016-04-28Test: splitting out static URL testsPjotr Prins
2016-04-28Changed the defunct GeneRIF URL to a working Wikipedia URL (whichPjotr Prins
also points to the non-working NCBI link)
2016-04-27test: test for broken linksPjotr Prins
2016-04-27Test: get to trait pagePjotr Prins
2016-04-26Test: main page and first searchPjotr Prins
2016-04-26Interval mapping: fix font and image pathPjotr Prins
2016-04-26README: add environment paths infoPjotr Prins
2016-04-26Merging with Zach's latest branchPjotr Prins
2016-04-25Interval Analyst table mostly working, just need to work out a few more thingszsloan
2016-04-22Fixed issue where manhattan plot setting wasn't being carried over to single ↵zsloan
chromosome view for mapping results Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing.
2016-04-20Interval Mapping now correctly does interval mapping if Marker Regression ↵zsloan
isn't checked (it used to just "connect the dots" of the marker regression output) Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does
2016-04-20Added borders to stats table in trait pagezsloan
2016-04-20Fix typoPjotr Prins
2016-04-20A few fixes to get the webserver running againPjotr Prins
2016-04-20Add filePjotr Prins
2016-04-20No longer ignore webqtlConfig.py - it should be genereic anywayPjotr Prins
2016-04-20Database informationPjotr Prins
2016-04-20README: point to gn-latest SHA valuesPjotr Prins
2016-04-20trasnform to transformDannyArends
2016-04-20Main READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20Changed the file stem of generated pictures to CTLDannyArends
2016-04-20Adding small figures per trait, so that users can see CTL and QTL for each ↵DannyArends
individual phenotype
2016-04-20Adding parameters, and passing them to the CTL algorithmDannyArends
2016-04-20Working on the output template of CTLDannyArends
2016-04-20Updates to the CTL code adding the significant results to the result objectDannyArends
2016-04-20Cleaning code, adding commentsDannyArends
2016-04-20Adding the lineplot image to the outputDannyArends
2016-04-20Adding code to do initial CTL mapping (working on the BXD)DannyArends
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