| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-10-17 | Fix bug when initializing Temp DatasetGroups | zsloan | |
| 2022-10-14 | Add BXD_GROUP_EXCEPTIONS to webqtlConfig.py instead of having the groups ↵ | zsloan | |
| hardcoded into show_trait.build_correlation_tools (+ add BXD-Heart-Metals to that list) I'm not sure why this logic exists, so it might be removed entirely later. I'm asking Rob | |||
| 2022-10-14 | Add redis_conn as argument to get_samplelist calls | zsloan | |
| 2022-10-14 | Declare search prefixes as boolean. | Arun Isaac | |
| Boolean search prefixes are used to filter the result set whereas non-boolean search prefixes merely contribute to the relevance score of the document. * wqflask/wqflask/gsearch.py (GSearch.__init__): Declare all search prefixes except description as boolean. | |||
| 2022-10-14 | Update mock: Return correct test data. | Frederick Muriuki Muriithi | |
| 2022-10-14 | Use f-strings to do string interpolation | Frederick Muriuki Muriithi | |
| 2022-10-14 | Set up year of publication correctly. | Frederick Muriuki Muriithi | |
| 2022-10-13 | Set scrollX to 100% in DataTables default settings | zsloan | |
| This should fix the issue where horizontal scrolling ruins the header/row alignment | |||
| 2022-10-12 | Use SQL to fetch trait metadata instead of gn-proxy, since it's dramatically ↵ | zsloan | |
| faster | |||
| 2022-10-12 | Add filtering logic for correlation results | zsloan | |
| 2022-10-12 | Include chr/mb in trait metadata | zsloan | |
| 2022-10-12 | Account for empty strings in get_string function | zsloan | |
| 2022-10-12 | Remove Test Correlation button and Biweight Midcorrelation option | zsloan | |
| 2022-10-12 | Include chr/mb values in jsonable trait | zsloan | |
| 2022-10-12 | Commit missing html page. | Frederick Muriuki Muriithi | |
| 2022-10-11 | Only compute Lit/Tissue corr when main trait's dataset is of type ProbeSet | zsloan | |
| 2022-10-11 | Fix block_by_index ID referenced in show_trait.js | zsloan | |
| 2022-10-11 | Change Interval Analyst table to use new GeneList table | zsloan | |
| The query changes in GeneUtil.pyi (to insert column names using string formatting) are definitely some sort of SQL injection issue, but I'm not sure how else to do it Also, the table name will be changed later, once the new table has been tested for a while. | |||
| 2022-10-11 | Remove logging from validation.js | zsloan | |
| 2022-10-10 | Replace GeneList table name with new table | zsloan | |
| Once this is confirmed to be working as expected, it will be changed back to GeneList (and the old table's name will be changed) | |||
| 2022-10-08 | Added Shelby to credits | Pjotr Prins | |
| 2022-10-08 | Update link to public datasets | Pjotr Prins | |
| 2022-10-06 | DEBUG: More info | Frederick Muriuki Muriithi | |
| 2022-10-06 | DEBUG: More debug of CI/CD. | Frederick Muriuki Muriithi | |
| 2022-10-06 | DEBUG: Collect more info to debug CI/CD | Frederick Muriuki Muriithi | |
| 2022-10-06 | Check for incompatible datasets for various correlation types. | Frederick Muriuki Muriithi | |
| 2022-10-05 | fix bug use target dataset for top n correlation | Alexander_Kabui | |
| 2022-10-05 | remove data preprocessing for top n samples | Alexander_Kabui | |
| 2022-10-05 | mechanical-rob: Fix tests that were checking for the wrong thing | Frederick Muriuki Muriithi | |
| 2022-10-05 | Handle correlation error | Frederick Muriuki Muriithi | |
| * Handle the correlation error such that it gives the user a better message for the cause of the error, instead of displaying the exception. | |||
| 2022-10-05 | Bug: Check for compatible datasets for a correlation type | Frederick Muriuki Muriithi | |
| 2022-10-05 | bug: Use target dataset when computing tissue correlations | Frederick Muriuki Muriithi | |
| 2022-10-04 | Fix bug where dataset_name was being passed into get_samplelist query ↵ | zsloan | |
| instead of group_id | |||
| 2022-10-04 | Pass redis_conn to get_samplelist | zsloan | |
| 2022-10-04 | Initialize result_list for /traits endpoint JSON output | zsloan | |
| 2022-10-04 | Remove unnecessary variable | Frederick Muriuki Muriithi | |
| Just assign the value of the function call directly to the dictionary key rather than using an intermediate variable. | |||
| 2022-10-04 | Add more information to exception to help in debugging | Frederick Muriuki Muriithi | |
| 2022-10-03 | Bug: Don't process data for output early | Frederick Muriuki Muriithi | |
| * The ",".join(...) call was processing the data for output to file, way too early, which would lead to errors down the line, very far removed from the actual cause of the error. | |||
| 2022-09-30 | Reformat statement | Frederick Muriuki Muriithi | |
| 2022-09-30 | Remove unused table and simplify query | Frederick Muriuki Muriithi | |
| 2022-09-30 | Raise hard-limit on search results to 10k. | Arun Isaac | |
| * wqflask/wqflask/gsearch.py (MAX_SEARCH_RESULTS): Set to 10k. | |||
| 2022-09-30 | Disregard permissions when displaying search results. | Arun Isaac | |
| * wqflask/wqflask/gsearch.py: Do not import types. (is_permitted_for_listing): Delete function. (GSearch.__init__): Do not call is_permitted_for_listing. | |||
| 2022-09-29 | Fix identation issues in attribute query code | zsloan | |
| 2022-09-29 | Curry function passed to Maybe.apply. | Arun Isaac | |
| * wqflask/wqflask/gsearch.py (GSearch.__init__): Curry function passed to Maybe.apply to construct the display name. | |||
| 2022-09-29 | Hard-limit the number of search results. | Arun Isaac | |
| * wqflask/wqflask/gsearch.py (MAX_SEARCH_RESULTS): New constant. (GSearch.__init__): Hard-limit the number of search results to MAX_SEARCH_RESULTS. | |||
| 2022-09-29 | Support prefix search and range queries. | Arun Isaac | |
| * wqflask/wqflask/gsearch.py (GSearch.__init__): Support prefix search and range queries. | |||
| 2022-09-29 | Retrieve year as integer. | Arun Isaac | |
| * wqflask/scripts/index.py (main): Retrieve year as an integer from the SQL database. * wqflask/wqflask/gsearch.py (GSearch.__init__): Convert year from integer to string. | |||
| 2022-09-29 | Index prefixed fields and add values. | Arun Isaac | |
| * wqflask/scripts/index.py (main): Index fields with prefixes, and add values for range queries. | |||
| 2022-09-29 | Replace MonadicDictCursor with generator function. | Arun Isaac | |
| * wqflask/utility/monads.py (MonadicDictCursor): Delete class. (sql_query_mdict): New function. * wqflask/scripts/index.py: Import sql_query_mdict instead of MonadicDictCursor. (main): Use sql_query_mdict. | |||
| 2022-09-29 | Open xapian database once, but SQL database once for each query. | Arun Isaac | |
| We reopen the SQL database once for each query because it times out if kept waiting. * wqflask/scripts/index.py (main): Open xapian database once, but SQL database once for each query. | |||
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| GeneNetwork (2nd generation) |
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