| Age | Commit message (Expand) | Author |
|---|---|---|
| 2014-02-28 | Made some changes/comments to Lei's load_genotypes.py file | Zachary Sloan |
| 2014-02-27 | Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. | Zachary Sloan |
| 2014-02-26 | Collection page now displays for temp/anon collections, but...still needs the option to remove traits from them | Zachary Sloan |
| 2014-02-25 | Made some more progress towards getting anonymous collections working | Zachary Sloan |
| 2014-02-25 | Committing part-way through getting anonymous collections working | Zachary Sloan |
| 2014-02-25 | Merge /home/sam/gene | Zachary Sloan |
| 2014-02-25 | Added untracked file | Sam |
| 2014-02-25 | Just committing after messing with the marker regression plot | Zachary Sloan |
| 2014-02-24 | Chromosome zoom is working for the marker regression manhattan plot...and results show up correctly in the table again | Zachary Sloan |
| 2014-01-30 | The calculations for the manhattan plot are now run from the command...line as a background process, allowing multiple to be run at the same time without the time increasing. | Zachary Sloan |
| 2014-01-30 | Added forgotten html page to repo...Fixed bugs where- - User tried to login with an email address that hasn't been registered - User tries to register an email address that was already registered Testing is still needed to confirm bugs were fixed properly and new ones weren't introduced | Sam |
| 2014-01-30 | Before trying to fix user login issue | Sam |
| 2014-01-30 | Most of the work is done towards running lmm.py from the command line...and storing the results in redis | Zachary Sloan |
| 2014-01-29 | Limited number of markers in marker regression result table to...those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis | Zachary Sloan |
| 2014-01-24 | Added natural sort to sort the index column for the sample data in...the trait page Hid the Quick Search on the index page until it is working well. Started writing a file to run the pyLMM code in the background to avoid memory issues/timing out | Zachary Sloan |
| 2014-01-23 | Histogram is working...Fixed some bug with generating the manhattan plot for the HLC data set | Zachary Sloan |
| 2014-01-03 | Wrote some code for the histogram figure...Changed some code in dataset to try and track down the issue with Amelie's file | Zachary Sloan |
| 2013-12-31 | Finished code to remove a trait or multiple traits from a collection...Wrote code to make buttons a little cleaner and more obvious when dealing with collections (they now enable themselves when traits that can be added or removed to/from a collection are selected) | Sam |
| 2013-12-30 | Fixed issue where box plots initially appeared below the bar chart...instead of in the second tab In the process of trying to fix the genofile to json parser so we can map Amelie's rat data In the process of having the color of bars in the bar chart "follow" them when they are resorted. | Zachary Sloan |
| 2013-12-30 | Collections changes | Sam |
| 2013-12-18 | Merge /home/zas1024/gene | Sam |
| 2013-12-18 | Fixed issue where "Type" and "Dataset" had no default values for...the home page drop-downs | Zachary Sloan |
| 2013-12-17 | Added the option to choose which method to use for the interval...mapping function (pyLMM or qtl reaper) | Zachary Sloan |
| 2013-12-12 | Put the code that rebuilds the bar chart into a function...Still need to fix issue where attribute colors don't stay with their associated samples/strains | Zachary Sloan |
| 2013-12-11 | Got sort by name/value buttons working and committing before trying...to put some of the d3 code into a function | Zachary Sloan |
| 2013-12-11 | Got color by trait working, but still need to add a legend and make...some other small changes (like removing samples that don't overlap with the selected trait) Tentatively removed jquery-ui from base.html; I'm not sure if we're still using this anywhere, but removing it doesn't seem to have had an impact on the trait page | Zachary Sloan |
| 2013-12-05 | Now trims selected trait's values by the samples of the primary trait and...gets their distinct values Created function that creates a dictionary of distinct values and their corresponding colors | Zachary Sloan |
| 2013-12-05 | Interval map graph now works properly...Tried to export trait data for "color by trait" function | Zachary Sloan |
| 2013-11-28 | Adding to collection now shows collection you added to and has informative me... | Sam |
| 2013-11-27 | Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph | Zachary Sloan |
| 2013-11-27 | Can now view trait list of a collection after clicking the collection...in the modal that pops up after clicking "Color by Trait" above the bar chart | Zachary Sloan |
| 2013-11-26 | Made some progress towards getting the traits inside a collection to display ... | Zachary Sloan |
| 2013-11-25 | Added HSNIH.json to ignore due to its size | Zachary Sloan |
| 2013-11-25 | Merge branch 'temp' | Zachary Sloan |
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan |
| 2013-11-22 | Did some work towards getting the interval mapping page working | Zachary Sloan |
| 2013-11-21 | Added apt-get dist-upgrade to notes | Zachary Sloan |
| 2013-11-20 | Merge /home/zas1024/gene | Lei Yan |
| 2013-11-20 | Created a box plot...Made the bar chart use a gradient if colored by something with more than 6 distinct values Put figures in tabs under the Charts/Figures part of the trait page | Zachary Sloan |
| 2013-11-14 | Can change the parameters of Sample Correlation Scatterplot | Lei Yan |
| 2013-11-05 | Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/templates/correlation_page.html | Lei Yan |
| 2013-11-05 | Add Correlation Scatter plot | Lei Yan |
| 2013-11-01 | In the process of opening a modal with the collection page inside | Zachary Sloan |
| 2013-11-01 | In the process of adding the function to color bar chart by the...values of a trait in your collection | Zachary Sloan |
| 2013-11-01 | Merge /home/sam/gene | Zachary Sloan |
| 2013-11-01 | Made the extra attribute bar chart coloring continue to work...when the user sorts and gave the option to revert to no coloring | Zachary Sloan |
| 2013-10-31 | Refactored login code and got remember me working | Sam |
| 2013-10-31 | Implemented superuser and switching users for debugging purposes | Sam |
| 2013-10-30 | More work on collections | Sam |
| 2013-10-30 | Got coloring by attribute working for the bar chart | Zachary Sloan |
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