| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins | |
| 2016-09-25 | Doc: Section on reproducibility | Pjotr Prins | |
| - fixed SVG URLs | |||
| 2016-09-13 | Save Image now works for Network Graph and downloads current graph as a png | zsloan | |
| 2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ↵ | zsloan | |
| and uncommented simplejson import Added "Reset" option to network graph that returns all the nodes/edges Made the visualization options area in the network graph a little wider | |||
| 2016-09-13 | Merge pull request #181 from pjotrp/zsloan | zsloan | |
| Run scripts from ./wqflask - just like the webserver | |||
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins | |
| 2016-09-12 | Merge pull request #180 from pjotrp/zsloan | zsloan | |
| Support maintenance scripts | |||
| 2016-09-10 | Comment | Pjotr Prins | |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver ↵ | Pjotr Prins | |
| settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | |||
| 2016-09-10 | Merge branch 'development' of github.com:genenetwork/genenetwork2 into zsloan | Pjotr Prins | |
| 2016-09-10 | Doc: Rpy2 note | Pjotr Prins | |
| 2016-09-09 | Added a couple options for network graph - Focus Trait, Layout, and a ↵ | zsloan | |
| correlation slider. The first only displays the edges for the specified trait/node, the second changes layout, and the third hides nodes/edges with abs(correlation) less than the slider's value Changed/added a couple node/edge attributes for network graph Updated dataset menu structure json file to include the human RETINA data set Added css file for network graph page (specifically to make the appearance of the options resemble the RETINA website's) | |||
| 2016-09-09 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins | |
| 2016-09-09 | Doc: note on guix paths | Pjotr Prins | |
| 2016-09-02 | Added Network Graph feature that uses cytoscape.js. Currently you can view ↵ | zsloan | |
| GN2 and third party links when clicking a node, view scatterplot when clicking an edge, and edges appearance varies based upon correlation Fixed issue that caused error with correlation page | |||
| 2016-08-26 | Fixed appearance (border width mostly) of basic stats table on trait page | zsloan | |
| Removed unnecessary datatables javascript code that referred to basic stats table | |||
| 2016-08-24 | Fixed issue causing bootstrap results to not plot correctly. | zsloan | |
| 2016-08-24 | Replaced post-publication description with pre-publication description for ↵ | zsloan | |
| confidential phenotype traits in search results and trait pages Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases) Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale Removed some unused javascript libary imports from search/global search pages | |||
| 2016-08-17 | Updated dataTables from 1.10.8 to 1.10.12 on search result page | zsloan | |
| 2016-08-17 | Fixed problem where Year column didn't sort properly in phenotype search and ↵ | zsloan | |
| global search results | |||
| 2016-08-16 | Users can now select specific traits from collection when using collection ↵ | zsloan | |
| tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc). | |||
| 2016-08-15 | Removed text recommending winsoring when mapping since that feature isn't ↵ | zsloan | |
| implemented yet Added padding to header text of Basic Statistics table | |||
| 2016-08-12 | Changed pop-up asking to import collections to less obtrusive checkbox | zsloan | |
| Decreased collections/list table width | |||
| 2016-08-11 | Added prompt when user logs in that lets them choose to import existing ↵ | zsloan | |
| anonymous collections as user collections | |||
| 2016-08-08 | Fixed bug where Interval Analyst result wouldn't appear for chromosome X in ↵ | zsloan | |
| mice/rats Fixed broken image link in Interval Analyst table for rats Small change to column width of gene global search | |||
| 2016-08-08 | Doc: gn_exec | Pjotr Prins | |
| 2016-08-05 | Fixed issue that caused some interval mapping results to be wrong; the cause ↵ | zsloan | |
| seems to be related to some strains being renamed in the genofiles Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days Updated genofiles | |||
| 2016-08-03 | Fixed issue with certain sample names (for example BXD48a, BXD72a, etc) that ↵ | zsloan | |
| caused single chromosome mapping to not work Disabled bootstrap for mapping unil issue causing wrong results is fixed Added header to first column of basic statistics table and increased width to avoid rows spilling over to second line | |||
| 2016-07-29 | Fixed issue where you couldn't delete collections when logged in | zsloan | |
| 2016-07-29 | Merge branch 'cookie_sessions' of github.com:zsloan/genenetwork2 into ↵ | zsloan | |
| development Conflicts: wqflask/base/data_set.py | |||
| 2016-07-29 | Fixed a couple issues where you couldn't remove or add traits to user ↵ | zsloan | |
| collections | |||
| 2016-07-27 | Problem with phenotype traits should be fixed now | zsloan | |
| 2016-07-27 | Fixed problem with phenotype traits causing error | zsloan | |
| Can now remove traits from collections and add to existing collections Fixed a few other minor collection bugs | |||
| 2016-07-26 | Docs: genotype | Pjotr Prins | |
| 2016-07-21 | Doc: SNP handling | Pjotr Prins | |
| 2016-07-20 | Changed anonymous collections to list of dictionaries instead of a ↵ | zsloan | |
| dictionary of dictionaries Can now add collections, view list of collections, and view collections from the collection list with anonymous collections | |||
| 2016-07-19 | Now correctly displays number of collections in top menu bar for non-logged ↵ | zsloan | |
| in users | |||
| 2016-07-18 | Merge branch 'cookie_sessions' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
| cookie_sessions | |||
| 2016-07-18 | Now correctly displays existing collections in 'add to collection' dropdown menu | zsloan | |
| 2016-07-18 | Merge pull request #171 from zsloan/cookie_sessions | zsloan | |
| Cookie sessions | |||
| 2016-07-18 | Committing latest changes to anon collection stuff, but still need to fix ↵ | zsloan | |
| some issues | |||
| 2016-07-17 | Doc: genotype data | Pjotr Prins | |
| 2016-07-16 | R/qtl: geno format | Pjotr Prins | |
| 2016-07-16 | README: added info | Pjotr Prins | |
| 2016-07-11 | Can now create a collection when not logged in (get to the view_collection ↵ | zsloan | |
| page), though still need to fix the code that lets you change a collection or list collections | |||
| 2016-07-08 | Docs: genotyping | Pjotr Prins | |
| 2016-07-06 | Committing current process on enabling multiple collections for users who ↵ | zsloan | |
| aren't logged in, but doesn't work yet | |||
| 2016-06-28 | Logger: disabled some noisy loggers | Pjotr Prins | |
| 2016-06-28 | Doc: Adding info on SQL use | Pjotr Prins | |
| 2016-06-26 | doc: ProbeFreeze and ProbeSetFreeze | Pjotr Prins | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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