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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
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Author
2013-04-17
Added a benchmark for running the chunks code on the list of snps
Zachary Sloan
2013-04-17
Renamed chunk_test.py to chunks.py
Zachary Sloan
2013-04-17
Updated chunk_test.py
Zachary Sloan
2013-04-17
Added chunk_test.py which compared my/ and sam's split into
Zachary Sloan
2013-04-17
Wrote code that tests the effectiveness of the function that divides a
Zachary Sloan
2013-04-17
Fixed small issue with the divide_into_chunks function
Zachary Sloan
2013-04-16
Wrote functions that divide a list into a specified number of chunks
Zachary Sloan
2013-04-16
Checking in before making some changes
Zachary Sloan
2013-04-16
Put most of the code calculating human association statistics in
Zachary Sloan
2013-04-11
Fixed a bug with quick_search_table.py
Zachary Sloan
2013-04-10
Created template for quick search page
Zachary Sloan
2013-04-09
Have quick search working for phenotypes
Zachary Sloan
2013-04-09
Nick's code works fine with human data
Zachary Sloan
2013-04-05
Loading bar now correctly shows the time to completion
Zachary Sloan
2013-04-05
Made change to nginx config file that seems to have fixed the
Zachary Sloan
2013-04-05
Got Nick's code working with the MDP datasets under the BXD group,
Zachary Sloan
2013-04-05
Made changes to get pylmm code working with HMDP datasets
Zachary Sloan
2013-04-02
Finished adding code that uses the plink genotype data if
Zachary Sloan
2013-04-02
Committing before splitting code that runs pylmm with plink files
Zachary Sloan
2013-04-02
pylmm code is running for human data (plink .bed genotype files)
Zachary Sloan
2013-03-28
quick_search_table.py seems to be running OK for the PublishXRef
Zachary Sloan
2013-03-28
quick_search_table.py now seems to run correctly for ProbeSetXRef
Zachary Sloan
2013-03-28
Committing before putting quick_search_table code in classes
Zachary Sloan
2013-03-27
Got quick_search_table.py to a point where it runs; will
Zachary Sloan
2013-03-27
Worked on trying to get results for quick search to display
Zachary Sloan
2013-03-26
Continued working on quick_search_table.py, which now gets
Zachary Sloan
2013-03-26
Created quick_search_table.py to create table with all of the
Zachary Sloan
2013-03-26
Just checking in code while in the process of trying to get
Zachary Sloan
2013-03-22
Began creating templates for login/registration
Zachary Sloan
2013-03-22
Added secure_server.py
Zachary Sloan
2013-03-22
Removed zach_settings.py from git tracking
Zachary Sloan
2013-03-21
Did some work towards getting Nick's code working with our plink
Zachary Sloan
2013-03-19
In the process of trying to use Nick's pylmmKinship.py code to
Zachary Sloan
2013-03-19
Added Nick's input.py file which uses plink .ped files as input
Zachary Sloan
2013-03-19
Searches work for the full access human datasets with mRNA assay
Zachary Sloan
2013-03-15
Began work with implementing general search
Zachary Sloan
2013-03-15
Changes related to searching for selected points in marker regression plot
Zachary Sloan
2013-03-13
Merge branch 'flask' of http://github.com/zsloan/genenetwork into flask
Zachary Sloan
2013-03-13
Added some to notes
Zachary Sloan
2013-03-12
Added the script generating probesetfreeze data matrix files
Zachary Sloan
2013-03-12
Highlighting points works in Firefox but still doesn't work in chrome
Zachary Sloan
2013-03-12
Got cashing working with pickle
Zachary Sloan
2013-03-09
Trying to get caching working with pickle now
Zachary Sloan
2013-03-08
Caching is working for marker regression but really slowly
Zachary Sloan
2013-03-08
Refactored GWAS function in lmm.py
Zachary Sloan
2013-03-07
Progress bar is now completely working
Zachary Sloan
2013-03-07
Have first 45% of progress bar working
Zachary Sloan
2013-03-07
Created file temp_data to store data related to progress
Zachary Sloan
2013-03-06
Stored percent of calculate_kinship function completion in
Zachary Sloan
2013-03-06
Improved positioning/size of copy/print/save buttons for
Zachary Sloan
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