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2014-08-28Added a validation that warns the user of the number of permutations for...pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch Zachary Sloan
2014-08-25Merge /home/lei/geneZachary Sloan
2014-08-25Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-08-25Merge /home/lei/geneZachary Sloan
2014-08-25Added permutations to pyLMMZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-08-21Added the option to display mapping results as either an interval mapping...or manhattan plot Fixed a few minor bugs Zachary Sloan
2014-08-15Permutations now work with rqtlZachary Sloan
2014-08-12Fixed the scrollable data tables for the show trait page...Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function Zachary Sloan
2014-08-04Fixed another minor issue with the heatmap where the original curve wouldn't ...Zachary Sloan
2014-08-04Fixed a problem with the heatmap after moving reorgLodData function to panelu......Got rqtl working with converted BXD genofile and also got composite mapping working Zachary Sloan
2014-07-25Got the heatmap/lodchart combo working...Started working on getting rqtl working as another mapping method Zachary Sloan
2014-07-21Fixed issue where sample values were ordered on the trait pageZachary Sloan
2014-07-21Heatmap is now working (using Karl's qtlcharts code), but still need...to figure out the issue with the color range Zachary Sloan
2014-07-21Merge /home/lei/geneZachary Sloan
2014-07-18Forgot to add the heatmap __init__.py file in the last commitZachary Sloan
2014-07-18Just did some more work on the heatmapZachary Sloan
2014-07-18Merge /home/zas1024/gene...Conflicts: wqflask/base/data_set.py Lei Yan
2014-07-18Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap Zachary Sloan
2014-07-18Correlation table for phenotypes is workingLei Yan
2014-07-14TestLei Yan
2014-07-14Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html Lei Yan
2014-07-14Test againZachary Sloan
2014-07-14Testing commit of HSNIH_copy.genoZachary Sloan
2014-07-14Made interval map zoom look better...Started creating probability plot for show trait page Added outlier detection message when user does mapping Zachary Sloan
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait Zachary Sloan
2014-06-12Long overdue of commit to changes that add a scatter plot to the correlation ......and let you select a trait from your collection on the trait page and do a scatter plot against that triat as well. There are a number of accompanying js and css files written by Karl Broman that are needed for these features. The option to compare against more than just one trait still needs to be added for the trait page scatterplot function Zachary Sloan
2014-06-06Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added Zachary Sloan
2014-05-19Fixed sorting on the show trait page...Added/improved the x and y axis on the bar graph and histogram GEMMA working but still really slow Zachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page Zachary Sloan
2014-03-26Got anonymous collections working correctly...Got results for the HSNIH and CANDLE marker regression pages (still some issues with the manhattan plot) Zachary Sloan
2014-03-05Improved load_genotypes.py...Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master Lei Yan
2014-02-28Committing after creating AnonCollection class and before adding...remove trait function Zachary Sloan
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-28Made some changes to Lei's IO code for GN1 and GN2 genofilesLei Yan
2014-02-27Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. Zachary Sloan
2014-02-26Collection page now displays for temp/anon collections, but...still needs the option to remove traits from them Zachary Sloan
2014-02-25Made some more progress towards getting anonymous collections workingZachary Sloan
2014-02-25Committing part-way through getting anonymous collections workingZachary Sloan
2014-02-25Merge /home/sam/geneZachary Sloan
2014-02-25Added untracked fileSam
2014-02-25Just committing after messing with the marker regression plotZachary Sloan
2014-02-24Chromosome zoom is working for the marker regression manhattan plot...and results show up correctly in the table again Zachary Sloan
2014-02-23On branch masterLei Yan
2014-02-23On branch masterLei Yan
2014-02-23On branch masterLei Yan
2014-02-22On branch masterLei Yan
2014-02-22On branch masterLei Yan
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