| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-01-25 | Merge branch 'flask' of http://github.com/zsloan/genenetwork into flask | Zachary Sloan |
| 2013-01-25 | Fixed a few bugs while trying to get the code running on the new server | Zachary Sloan |
| 2013-01-24 | Added a lot to the notes in the process of setting up on the...new server | Zachary Sloan |
| 2013-01-23 | Added a bunch to notes and created new notes file specifically...related to installing a new instance of GN | Zachary Sloan |
| 2013-01-22 | Added a couple things to notes regarding installing mysql client | Zachary Sloan |
| 2013-01-22 | Pushed through a few errors in getting the correlation page running | Zachary Sloan |
| 2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places | Zachary Sloan |
| 2013-01-12 | Commented out a couple things in requirements.txt to get pip...install to work | Zachary Sloan |
| 2013-01-11 | Merge branch 'flask' of http://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-01-11 | Commented out import of rpy2 in correlationFunction.py due to...problem with rpy2 | Zachary Sloan |
| 2013-01-11 | Upgraded packages requirements.txt but haven't tested | Zachary Sloan |
| 2013-01-11 | Overwrote requirements.txt | Zachary Sloan |
| 2013-01-11 | Trimmed a bunch of code off of marker_regression.py | Zachary Sloan |
| 2013-01-10 | Checking in before we try to write our own code for the manhattan...plot figure` | Zachary Sloan |
| 2013-01-10 | Checking in before trying to put manhattan plot sections closer together | Zachary Sloan |
| 2013-01-10 | Normalized the y axis for each manhattan plot section | Zachary Sloan |
| 2013-01-10 | The plots now correctly appear above/below each other....Committing before trying to combine all the manhattan plot segments | Zachary Sloan |
| 2013-01-10 | Edited marker_regression.coffee to make every sub-manhattan plot...for each chromosome display Created css file for the marker_regression page Currently has display issue where the permutation histogram is overlapping with the manhattan plot | Zachary Sloan |
| 2013-01-10 | Made Chromosome class in marker_regression.coffee; current...it writes each chromosome's manhattan plot on top of each other. This commit is before trying to fix that. | Zachary Sloan |
| 2013-01-10 | Made x-axis values into ints; committing before trying to add multiple graphs...for each chromosome | Zachary Sloan |
| 2013-01-10 | Worked with the manhattan plot coffeescript to set x-axis and change...the plot point sizes and remove lines | Zachary Sloan |
| 2013-01-09 | Manhattan plot results are appearing correctly for chromosome 1 | Zachary Sloan |
| 2013-01-09 | The histogram coffeescript is now in its own class and the graph...still displays correctly | Zachary Sloan |
| 2013-01-09 | Checking in before putting the histogram coffeescript into its own...class | Zachary Sloan |
| 2013-01-09 | More or less finished the permutation histogram | Zachary Sloan |
| 2013-01-09 | Got the permutation plot working as a line plot; still need to make...it into a bar graph, though | Zachary Sloan |
| 2013-01-09 | jqplot added | Zachary Sloan |
| 2013-01-09 | Got the marker regression page to display again...Passed lrs_array values as js_data for the permutation histogram | Zachary Sloan |
| 2013-01-08 | js_data is being printed out (seemingly) correctly now for the...marker_regression page | Zachary Sloan |
| 2013-01-08 | Created IndChromosome class in species.py and wrote functions for...chromosome-related attributes Began to try and pass qtlreaper results as js_data to use when drawing graphs | Zachary Sloan |
| 2013-01-08 | Deleted some unnecessary code in marker_regression.py and fixed some bugs...Added a couple utility functions to the Chromosomes class in species.py | Zachary Sloan |
| 2013-01-04 | Continued rewriting marker_regression.py code | Zachary Sloan |
| 2013-01-04 | Correct results are being returned from reaper for the marker regression page | Zachary Sloan |
| 2013-01-03 | Began working on marker_regression.py and created Chromosomes class...in species.py | Zachary Sloan |
| 2013-01-03 | marker_regression page is up again | Zachary Sloan |
| 2013-01-03 | Created template for marek regression page and made the compute button direct...to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py | Zachary Sloan |
| 2012-12-20 | Changed layout of marker regression options | Zachary Sloan |
| 2012-12-20 | The control locus field in the interval mapping settings is now disabled if..."choose closest control" is set to "yes" | Zachary Sloan |
| 2012-12-20 | Made composite mapping options show/hide for the interval mapping section | Zachary Sloan |
| 2012-12-20 | More changes to the layout of interval mapping options | Zachary Sloan |
| 2012-12-20 | Continued to customize the interval mapping menu | Zachary Sloan |
| 2012-12-20 | Improved appearance/layout of the interval mapping tab using bootstrap | Zachary Sloan |
| 2012-12-20 | Form data passed via POST for marker regression...Removed "Use Parents" and "Use Weighted" Created text box to input # permutations for pair scan | Zachary Sloan |
| 2012-12-18 | Changed html for the marker regression tab...Created file show_trait_mapping_tools.coffee to handle submitting the form to the marker regression page Changed form name/id in show_trait.html to "trait_data_form" | Zachary Sloan |
| 2012-12-18 | Created new file species.py and species class object TheSpecies...Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests | Zachary Sloan |
| 2012-12-07 | Got links working for statistics table labels | Zachary Sloan |
| 2012-12-07 | Got basic statistics in show_trait to display the correct number...of samples for each group Got show_trait page to display for genotype traits | Zachary Sloan |
| 2012-12-07 | Got show_trait page to appear again for phenotype traits...Need to see why other samples list doesn't appear for traits in BXDPublishedPhenotypes | Zachary Sloan |
| 2012-12-06 | All 10 stats working | Zachary Sloan |
| 2012-12-06 | Continued work on basic statistics table in show_trait...Continued work towards getting show_trait to work with phenotype traits | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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