| Age | Commit message (Expand) | Author |
|---|
| 2023-06-06 | Add 1 to LRS_LOD_MAX in order to prevent situations where a tick is missing f... | zsloan |
| 2023-06-06 | Align probability plot title to the left ('xanchor: right' does this for some... | zsloan |
| 2023-06-06 | Make geoSeries a link...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Put metadata name in a new line...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Fix geoplatform link in datasets page...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Fix some titles in INFOPAGE...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | If a title doesn't exist, use the metadata name instead...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-06 | Update dataset page to match GN1...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-02 | Add dataset link that uses RDF...* wqflask/wqflask/templates/dataset.html: New page.
* wqflask/wqflask/templates/show_trait_details.html: Add link to GN2
datasets page.
* wqflask/wqflask/views.py (get_dataset): New endpoint.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-06-02 | Delete trait metadata from the show_traits page...* wqflask/wqflask/templates/show_metadata_details.html: Delete.
* wqflask/wqflask/templates/show_trait.html: Delete if block that
checks includes trait metadata.
* wqflask/wqflask/views.py: Remove "metadata".
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-05-31 | Use utility.tools to get configuration variables...Using flask.current_app.config for configurations does not give the
appropriate configurations.
| Frederick Muriuki Muriithi |
| 2023-05-31 | Compute dataset type from name. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Sort values to avoid equality problems. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Expect tuple not set. | Frederick Muriuki Muriithi |
| 2023-05-30 | Fix test: Expect tuple not set. | Frederick Muriuki Muriithi |
| 2023-05-25 | auth: Show publicly visible traits. | Frederick Muriuki Muriithi |
| 2023-05-25 | Rework UI. Set resource publicly viewable by default....Reorganise the UI for resource creation.
Add a checkbox that sets the resource as publicly viewable by default.
| Frederick Muriuki Muriithi |
| 2023-05-24 | Add link to user-account registration page. | Frederick Muriuki Muriithi |
| 2023-05-23 | oauth2: Enable admins to masquerade as other users | Frederick Muriuki Muriithi |
| 2023-05-22 | Initialize exonStarts and exonEnds for mouse, since it currently throws an er... | zsloan |
| 2023-05-22 | Allow for editing values of samples that don't currently have values...Deletions aren't working yet. This is dependent on a GN3 chance that allows the sample_list to be passed to get_trait_csv_sample_data
| zsloan |
| 2023-05-22 | Fix phenotype metadata template to only read in changed sample data...Also fix the display so it only shows 3 decimal places
| zsloan |
| 2023-05-22 | Add support for editing sample data via an HTML table...This doesn't yet support adding sample data for samples that don't already have values
| zsloan |
| 2023-05-22 | Enable running application under pdb....Add an option to help with running the application under pdb, and add
some documentation to help other developers figure it out.
| Frederick Muriuki Muriithi |
| 2023-05-19 | auth: Integrate metadata editting with new auth | Frederick Muriuki Muriithi |
| 2023-05-19 | auth: Use auth privileges to control UI display...Use the privileges from the authorisation endpoint to control which
elements of the UI are displayed to the user.
* wqflask/base/trait.py: Remove unused import
* wqflask/wqflask/show_trait/show_trait.py: Unhook from GN-PROXY
* wqflask/wqflask/templates/show_trait.html: Display or hide UI
elements depending on the privileges the user has.
* wqflask/wqflask/templates/show_trait_details.html: Display or hide
UI elements depending on the privileges the user has.
* wqflask/wqflask/views.py: Pass privileges, user, and resource
details on to the UI template to be used for controlling UI element
display.
| Frederick Muriuki Muriithi |
| 2023-05-18 | auth: Change collection name...Enable the changing of the collection names.
* wqflask/wqflask/collect.py: Send data to GN3 API
* wqflask/wqflask/templates/collections/view.html: Use an actual form
and submit it.
| Frederick Muriuki Muriithi |
| 2023-05-18 | auth: Display flash messages. | Frederick Muriuki Muriithi |
| 2023-05-18 | auth: Add and remove traits from collections...* wqflask/wqflask/collect.py: Add and remove traits to and from
collections.
* wqflask/wqflask/oauth2/client.py: Add functions for POST and GET
that do the right thing depending on whether or not the user is
logged in.
* wqflask/wqflask/oauth2/request_utils.py: Add some common utility
function to create the data extraction functions for
`pymonads.either.Either` objects.
| Frederick Muriuki Muriithi |
| 2023-05-17 | auth: Integrate deleting selected collections with auth...Enable the deletion of selected collections via the GN3 api.
| Frederick Muriuki Muriithi |
| 2023-05-17 | auth: Integrate collections badge with auth...Show the total number of collections available in the active session
in the collections badge at the top of the page.
Also do some minor UI tweaks to differentiate the user and anonymous
collections.
| Frederick Muriuki Muriithi |
| 2023-05-17 | auth: Import/Delete Anonymous Collections...Integrate import/delete of anonymous collection when user is
authenticated.
| Frederick Muriuki Muriithi |
| 2023-05-16 | auth: View collection details from GN3 endpoint...Retrieve a specific collection's details from the GN3 endpoint rather
than from the session, as was done previously.
| Frederick Muriuki Muriithi |
| 2023-05-15 | Create new collection via GN3 API...* wqflask/wqflask/collect.py: Send data to the GN3 API to create the
new collections.
* wqflask/wqflask/oauth2/client.py: Ensure request is sent as a json
request.
* wqflask/wqflask/static/new/javascript/search_results.js: use "POST"
rather than "GET" and send the traits also, in addition to the hash
| Frederick Muriuki Muriithi |
| 2023-05-12 | auth: Fetch anonymous collections from separate endpoint. | Frederick Muriuki Muriithi |
| 2023-05-12 | auth: Integrate sessions with auth...Rework the sessions to do what was handled by the soon-to-be-obsolete
`wqflask.user_sessions` module.
This is necessary in order to retain the expected functionality of the
user collections, especially:
* anonymous user collections
* authenticated user collections
* import of anonymous collections when user authenticates
| Frederick Muriuki Muriithi |
| 2023-05-10 | auth: Fetch user collections from GN3...Fetch the user collections from GN3 for users that have authenticated.
| Frederick Muriuki Muriithi |
| 2023-05-10 | auth: bug-fix: Call `logged_in` function...The `logged_in` symbol was changed from a plain variable into a
function, so we need to call it to get its actual value.
| Frederick Muriuki Muriithi |
| 2023-05-09 | Integrate OAuth2 auth with GN2 UI...Update the templates to make use of the OAuth2 authentication rather
than the older authentication that used Redis.
hook-up-auth-to-traits-page | Frederick Muriuki Muriithi |
| 2023-05-09 | auth: Handle authentication using the "Authorization Code Flow" | Frederick Muriuki Muriithi |
| 2023-05-08 | oauth2: UI - Remove `Edit` element...The `Edit` button was unnecessary, since the `View` button gives the
user access to a UI that allows them to edit the role.
| Frederick Muriuki Muriithi |
| 2023-05-08 | oauth2: Fix UI failure on authorisation errors...Surround the UI elements with the check for any authorisation errors
to avoid trying to access non-existent data (this leads to an
exception).
| Frederick Muriuki Muriithi |
| 2023-05-08 | oauth2: Add auth-checking wrapper to `/show_trait?...` page...As a proof-of-concept, add some sort of wrapper to check whether the
user has access to the given trait/dataset.
This will probably need some improvement to check for edit access,
curation access, etc.
| Frederick Muriuki Muriithi |
| 2023-05-04 | Fix bug where global search had wrong checkbox values | zsloan |
| 2023-05-03 | Add table for editing sample values/SE/N | zsloan |
| 2023-05-01 | Left-align histogram title...For some reason xanchor=right does this
| zsloan |
| 2023-04-28 | Enable passing dataid for correlation results...This allows the scatterplots to use edited sample data
| zsloan |
| 2023-04-28 | Use cached sample data in scatter plots (when applicable) | zsloan |
| 2023-04-28 | Cache trait sample data for mapping...This is so edited sample values can be used in the additive effect scatterplots
| zsloan |
| 2023-04-25 | auth: disable UI elements for non-editable roles...If a role is not user-editable, disable the UI elements that allow
editting of the role to prevent that as an option in the first place.
| Frederick Muriuki Muriithi |
