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2021-10-12Fix R/qtl mapping testzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/add_rqtl_pairscan
2021-10-12Fixed test_gen_covariates_filezsloan
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-08Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵zsloan
added some comments + changed EOL to LF because the file suddenly started including EOL characters
2021-10-08Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵zsloan
since I was only writing it to generate a specific file and it probably won't be re-used
2021-10-06scripts: resource: Add option for specifying a groups uuidBonfaceKilz
2021-10-06scripts: group: Replace args.group_name with data["field"]BonfaceKilz
2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
2021-10-06workflows: main.yml: Disable link checkingBonfaceKilz
2021-10-06scripts: group: Remove empty `""` value for data.getBonfaceKilz
data.get("field") will default to None if there is no value; and None is falsy.
2021-10-06scripts: group: Remove unused importBonfaceKilz
2021-10-06scripts: group: Use a unique key to identify a groupBonfaceKilz
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-05Removed permutation options for pair-scan for now since they're probably not ↵zsloan
necessary
2021-10-04Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need ↵zsloan
to be globally accessed anymore (I think I intiially moved it because I was calling it in create_group_data, but that ended up being unnecessary
2021-10-04Changed the group.py script to replace user e-mails with IDs and to include ↵zsloan
id, name, changed_timestamp, and created_timestamp in group details
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04Fixed some issue with the way the Pair Scan tab appeared in ↵zsloan
show_trait_mapping_tools.html
2021-10-04scripts: group.py: Modify exit message when displaying updated dataBonfaceKilz
2021-10-04scripts: group.py: Remove "glom" dependencyBonfaceKilz
2021-10-04Decode redis response by defaultBonfaceKilz
2021-10-04Modify resource editing script to enable data backups & restorationBonfaceKilz
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Add script that adds "editors" group to all resources in RedisBonfaceKilz
2021-10-04Add script for creating/ updating groups during authorisationBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queriesBonfaceKilz
* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user.
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-09-30Fixed table/column widths and removed some unused codezsloan
2021-09-28Fixed parameter name for mapmodel_rqtlzsloan
2021-09-28Merge branch 'feature/add_rqtl_pairscan' of github.com:zsloan/genenetwork2 ↵zsloan
into feature/add_rqtl_pairscan
2021-09-28Added table for pair scan results to templatezsloan
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codesBonfaceKilz
The stack trace causes the log file to grow into unmanageable sizes over time.
2021-09-22Removed the Control for (marker) option from R/qtl for now since Danny ↵zsloan
mentioned it isn't working correctly
2021-09-22Fixed issue where the control marker parameter was being passed incorrectly ↵zsloan
to GN3 (should be just 'control' but was previously passed as 'control_marker')
2021-09-22Only show most search page options if results exist; otherwise provide a ↵zsloan
link back to the home page
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-25 21:56:30 +0000