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2019-05-29Added info for fetching trait listzsloan
2019-05-24Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-24Added status to error messageszsloan
2019-05-24Put API readme in correct placezsloan
2019-05-24Return JSON error instead of html nowzsloan
2019-05-24Added currently api progress, which will henceforth be appropriately committe...zsloan
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-23Fixed issue where some descriptions caused an errorzsloan
2019-05-17Made check for trait IDs a bit more secure to hopefully avoid any errors simi...zsloan
2019-05-17Fixed issue that caused error for traits with no unigene idzsloan
2019-05-14Added all of the third party links from GN1...Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty) zsloan
2019-05-08Fixed issue where descriptions sometimes had unicode characters appear strangelyzsloan
2019-05-07Added link to GeneBridge to trait pagezsloan
2019-05-07Fixed issue where, if the user searched for a location range in the SNP Brows...zsloan
2019-05-06Removed horizontal scroll from twitter field on index pagezsloan
2019-05-06Added link to Affiliates section of index pagezsloan
2019-05-06Made some changes Rob asked for to index page; reorganized some items and mad...zsloan
2019-05-06Removed some unused imports of htmlgen...Fixed a bug that sometimes occurred in search results Changed order of items on index page zsloan
2019-04-26Issue where GEMMA LOCO mapping didn't work when samples were edited out shoul...zsloan
2019-04-26Fixed issue where changed smaple values didn't show up in haplotype analyst r...zsloan
2019-04-18Fixed issue that caused removed strains to still appear in the haplotype anal...zsloan
2019-04-12Fixed PDF links in reference to point to the PDFs in GN1zsloan
2019-04-12- Improved Interval Analyst table appearance in mapping results...- Made the text on the "Forgot Password" page more simple and less cluttered - Added line to index page about RANGE search function - Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length zsloan
2019-04-10Removed option to upload file for submitting traits, since it doesn't current...zsloan
2019-04-10Fixed issue that was causing submitted temp traits to not workzsloan
2019-04-05Fixed issue that caused error for phenotype searches (kind of a quick fix and...zsloan
2019-04-05Fixed issue where Max LRS column displayed the mean in global search resultszsloan
2019-04-04Fixed issue where dataset_menu_structure.json included some groups with no vi...zsloan
2019-04-03Fixed an issue that caused global phenotype search to often not work and cert...zsloan
2019-04-03Fixed issue where strains could be added twice in the SNP browser, causing so...zsloan
2019-04-02Fixed issue where non-GEMMA mapping would throw an error because it would sti...zsloan
2019-03-29Fixed issue that caused PCA results to be different in GN2 than in GN1; one r...zsloan
2019-03-29Updated UCSC Verify link-out from hg19 to hg38 for humanszsloan
2019-03-28Added link to GN2 document github wiki to index pagezsloan
2019-03-28Possibly fixed issue where PCA traits didn't calculate for certain sets of tr...zsloan
2019-03-27Changed gen_select_dataset.py to be able to show multiple datasets under the ......Fixed issue where full description was given for some unpublished traits Fixed code related to editing certain pages (like news) with CKEditor, but it still won't work until the CKEditor library is included in GUIX or something zsloan
2019-03-25- Added SVG export to basic stats figures...- Fixed issues where some stats figures (mainly box and violin plots) didn't update correctly when sample values were changes - Fixed issue with some temp traits if user wasn't logged in - Fixed issue where traits couldn't be added to a collection from the correlation results page zsloan
2019-03-19Added option to add PCA traits to collection from correlation matrix pagezsloan
2019-03-18- Added PCA traits to correlation matrix. You can't change their names yet or......but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well, but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch - Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc - Fixed some appearance issue where the network graph options were too wide if a trait name was too long zsloan
2019-03-13Zooming into chromosome or remapping with GEMMA is now very fast, since it st......Added option to search for terms in quotes, searching for all the contents within the quotes Added link to R/qtl documentation when user is in the R/qtl mapping tab zsloan
2019-03-11Changed header style, because the jumbotrons previously used didn't look that...zsloan
2019-03-11Added default empty collection when user is logged in and attempts to add tra......Fixed issue with displaying cofactor selection tables for scatterplot Removed limit on text length for collection trait fields (dataset name and description) zsloan
2019-03-07Changed the way covariates are displayed when selected for mapping...Made the outlier notification appear for all mapping methods Removed some misleading text saying "Block samples" from the Transform and Filter Data section zsloan
2019-03-07Made violin plots for different groups/sample-sets different colors and match...zsloan
2019-03-07Fixed issue where pressing enter in the search page text area would go to a n......Also removed some pointless wrapper from dataset_select_menu_orig.js that was left over from being converted from coffeescript (need to do this with other files also) zsloan
2019-03-07Fixed issue where correlation results containing NaN results sorted incorrectly...Set default permutations for R/qtl to 200 zsloan
2019-03-06Cofactor option for correlation scatterplot was broken; it should be fixed now...Added title to basic stats table and made link for Interquartile Range more obvious Removed pointless "Delete Collection" button from correlation results page zsloan
2019-03-05Made R/qtl metho/model names better and added some javascript to disable wron...zsloan
2019-03-04Fixed excel export to show all columns...Fixed stats table to calculate Range and Interquartile Range correctly, and only show Range (fold) for appropriate traits zsloan
2019-03-04- Added z-score transformation...- Added text indicating which transformation has been applied zsloan
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