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2021-10-25authentication_tools: Mark `check_owner_or_admin` as deprecatedBonfaceKilz
Use the new auth proxy tools instead.
2021-10-25Add "GET /resource-management/resources/<resource_id>"BonfaceKilz
2021-10-25wqflask: resource_manager: Add `add_extra_resource_metadata` methodBonfaceKilz
2021-10-25Remove dead lineBonfaceKilz
2021-10-25manage_resource.html: Display group name next to it's unique idBonfaceKilz
2021-10-25manage_resource.html: If owner owns a resource display their nameBonfaceKilz
2021-10-25manage_resource.html: Remove "flash"BonfaceKilz
2021-10-25utility.hmac: Label "hmac_creation" as deprecatedBonfaceKilz
This function is coupled to "wqflask.app", therefore requiring it's import at the module level. This may lead circular importation issues when working with blueprints.
2021-10-25decorators: Add `@login_required` decoratorBonfaceKilz
2021-10-25Remove "utility.hmac.hmac_creation" which causes circular importsBonfaceKilz
Hacky but re-implement `hmac_creation` as `create_hmac`
2021-10-25Replace "resource_id" with "resource_info" dictBonfaceKilz
This avoids calling Redis twice when fetching metadata about the resource.
2021-10-25Get a users access maskBonfaceKilz
If a user has several access roles, select the highest role.
2021-10-25Add immutable data structures for admin and data access rolesBonfaceKilz
2021-10-25resource_manager: Add OrderedEnumBonfaceKilz
Borrowed from: <https://github.com/woodruffw/ordered_enum/tree/master/src/ordered_enum>
2021-10-25resource_manager: Add `get_user_membership` methodBonfaceKilz
2021-10-25resource_manager: Delete every route & helper method in this moduleBonfaceKilz
This module is coupled to `utility.redis_tools` which needs to be deprecated. Also, the routes are created by importing `app` instead of creating a new blueprint.
2021-10-25Add test-cases for `get_user_membership`BonfaceKilz
2021-10-25Mark `get_resource_info` as deprecatedBonfaceKilz
2021-10-25Add default setting for REDIS_URLBonfaceKilz
2021-10-25Move markdown_routes to api/markdownBonfaceKilz
All new API definitions should be migrated to "wqflask/ api"
2021-10-25api: correlation: Delete unused importsBonfaceKilz
2021-10-25api: correlation: Delete unused loggerBonfaceKilz
2021-10-22Include the admin privilege for the 'editors' group, since it wasn't being ↵zsloan
set before (which caused some problems)
2021-10-22Fix line pulling GN3_LOCAL_URL from settingszsloan
2021-10-22Replace hardcoded GN proxy URLs in trait.py with one pulled from settingszsloan
2021-10-22Replace hardcoded GN proxy URL in decorators.py with one pulled from settingszsloan
2021-10-22Replace hardcoded GN proxy URLs with one pulled from settingszsloan
2021-10-22Replace hardcoded GN3 RQTL URLzsloan
2021-10-22Added proxy and local GN3 URLs in tools.py (which should be set in the ↵zsloan
settings file)
2021-10-22Add NSF awardPjotr Prins
2021-10-22Updated funding and creditsPjotr Prins
2021-10-22Possible fix for the weird inconsistent correlation key error for strain ↵zsloan
BXD073bxBXD077F1
2021-10-19Fixes issue with the bytes encoding being included in the string for ↵zsloan
ProbeSet trait descriptions on the search result page
2021-10-19Fixed some errors/logic for search results related to how the name/display ↵zsloan
name was being set
2021-10-19Fixed bug where the record ID for ProbeSet traits wasn't being pulled from ↵zsloan
the correct position in the query results
2021-10-19Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-10-19Fixed heatmap URL in view_collectionzsloan
2021-10-18Merge pull request #557 from zsloan/feature/remove_trait_creation_from_searchzsloan
Feature/remove trait creation from search
2021-10-18Fixed the way group code was used when setting phenotype trait display name ↵zsloan
+ prevent encoding error with try/except
2021-10-18Changed table width to 100% for non-Geno datasets, since it can always be ↵zsloan
manually resized
2021-10-18Replace this_trait.dataset.type with just self.dataset.typezsloan
2021-10-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/remove_trait_creation_from_search
2021-10-18Merge pull request #562 from zsloan/feature/add_resizeable_columnszsloan
Add Resizeable Table Columns
2021-10-14Merge pull request #605 from genenetwork/clustered_heatmapsBonfaceKilz
Clustered heatmaps
2021-10-14Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcnaBonfaceKilz
test template for gn3 wgcna
2021-10-13Fix issue where score_type being set wrong caused an error when exporting ↵zsloan
mapping results (a while back it was changed from LOD to -logP)
2021-10-13Add some documentation for generating heatmapsFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user.
2021-10-13Update the action button textFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers.
2021-10-13resolve merge conflictAlexander Kabui
2021-10-13disable heatmap imageAlexander Kabui
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 02:19:45 +0000