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2016-04-20[PATCH 049/100] SNP_PATH: removalPjotr Prins
2016-04-20Update INSTALL.mdpjotrp
2016-04-20[PATCH 047/100] This commit moves the image generation dir *outside* the git ...Pjotr Prins
2016-04-20external program should fail on return value not zeropjotrp
2016-04-20[PATCH 045/100] Reverted on previous changes. With a corrected... python2-piddle module the thing works. Turns out that the version we are using is not the same as the public one. Despite the same version number. Pjotr Prins
2016-04-20Minor fixespjotrp
2016-04-20[PATCH 042/100] Sanitizing locationsPjotr Prins
2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20When a sample does not exist we should not set sample_data to None. Better to...pjotrp
2016-04-20-a...[PATCH 039/100] Removing commented code Pjotr Prins
2016-04-20-a...[PATCH 038/100] Fix compile errors Pjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20With missing samples to not add them to the result setpjotrp
2016-04-20This threw an error when sample is missing in the DB....Let sample pass without data if the sample/genotype does not exist in the database. pjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20Fine tuning file locatingpjotrp
2016-04-20tools.py: add function locate_without_errorpjotrp
2016-04-20Tell redis where to store its persistent dbpjotrp
2016-04-20[PATCH 027/100] Introduce tools.locatePjotr Prins
2016-04-20[PATCH 026/100] Introducing cached values PYLMM_COMMAND,... GEMMA_COMMAND, PLINK_COMMAND and TEMPDIR Pjotr Prins
2016-04-20Introducing TEMPDIRpjotrp
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-20Successful startup of GN2 with MySQLpjotrp
2016-04-20Remover dependency to logger_tree (may reintroduce later)pjotrp
2016-04-20[PATCH 018/100] Find external tools: refactored code to work with GNU GuixPjotr Prins
2016-04-20README: add URLpjotrp
2016-04-20* bin/genenetwork2: path handlingpjotrp
2016-04-20Removed import htmlgen as is not used (apparently)pjotrp
2016-04-20* ./bin/genenetwork2: New filepjotrp
2016-04-20Docs: Use ./doc dir instead of ./miscpjotrp
2016-04-20[PATCH 012/100] Adding configuration for running a default serverPjotr Prins
2016-04-20[PATCH 010/100] READMEPjotr Prins
2016-04-20DocsPjotr Prins
2016-04-19Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts: wqflask/base/trait.py zsloan
2016-04-18Additive effect lines are now separated by chromosome (like the qtl line in t......Fixed order of stats table in trait page Removed the qtl results table from chromosome view; will add the Interval Analyst output later zsloan
2016-04-14Fixed issue where qtl lines in interval mapping wouldn't connect between chro......Added text explaining what * indicates in the mapping options menu Removed ranges (log2 and fold) from stats table for phenotype traits zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-13All the datatables stuff should be passable by AJAX now, just need to figure ...zsloan
2016-04-12Fixed order of columns in AJAX-loading global search and added trait link...Table width is now correct with Y scrolling zsloan
2016-04-11Changing global gene search to use gsearch_gene.html instead of gsearch_gene_...zsloan
2016-04-11Figured out how to load results into dataTable using AJAX, but still need to ......Added code getting the description, etc to trait.py since it was missed from last commit zsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge......This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line zsloan
2016-04-07Added option to change the maximum y-axis value for GN1 mapping figurezsloan
2016-04-07Permutation figure and x-axis label should change to correctly reflect the ma......Fixed bug where broken image link would appear if you ran R/qtl with no permutations zsloan
2016-04-07SNP Track option should now work for GN1 mapping figure...Fixed typo in show_trait html that caused the p-value slider to not work for correlations zsloan
2016-04-06The option to switch between LRS and LOD for the GN1 mapping figure should no......The correct value (LRS or LOD) will now be displayed in the results table Added glossary links for GN1 mapping figure options (permutations, bootstrap, etc) zsloan
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