| Age | Commit message (Expand) | Author |
|---|
| 2020-08-24 | Fix some pylint errors...* wqflask/wqflask/marker_regression/display_mapping_results.py: Remove unused
imports and add fix some pylint errors
| BonfaceKilz |
| 2020-08-24 | Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is
does not have py3 support so it's important to remove references to it.
| BonfaceKilz |
| 2020-08-24 | Rename file...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py:
Rename test_display_marking_results.py to test_display_mapping_results.py
| BonfaceKilz |
| 2020-08-24 | Fix failing test...* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data
introduced in 092212df
Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com>
| BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand...* wqflask/wqflask/marker_regression/display_mapping_results.py - defined
im_drawer in drawHaplotypeBand to fix errror and removed an unused
import
| zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to
the dynamically set TEMPDIR
* wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location
with TEMPDIR
| zsloan |
| 2020-08-22 | Set min-width for search result table, since the description column...often looks weird if it gets below a certain width
* wqflask/wqflask/templates/search_result_page.html - Set min-width of
table container div to 1500px since that seems to be a reasonable width
that prevents the description column from getting too narrow
| zsloan |
| 2020-08-20 | Changed Molecular Trait Datasets to Molecular Traits in the Type...drop-down on the home page
* wqflask/wqflask/api_gen_menu.py - Changed where Molecular Trait
Datasets was hardcoded to Molecular Traits
| zsloan |
| 2020-08-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-20 | Merge pull request #423 from BonfaceKilz/build/use-datatable-extensions-from-......Build/use datatable extensions from guix | zsloan |
| 2020-08-20 | Check the availability of datatables extension files from guix...* test/requests/link_checker.py (check_packaged_js_files): Add it.
* test/requests/test-website.py: Use above method.
| BonfaceKilz |
| 2020-08-20 | Use dataTables.colResize.js and naturalSort from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.colVis.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.bootstrap.css from guix | BonfaceKilz |
| 2020-08-20 | Use scroller.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.colReorder.js from guix | BonfaceKilz |
| 2020-08-20 | Use jquery.dataTables.js from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.buttons.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-19 | Added Invert button to collection page...* wqflask/wqflask/templates/collections/view.html - Added the Invert
button back to the collection page; it was removed in the past but Rob
decided it should be re-added
| zsloan |
| 2020-08-19 | Tools used from the collection page now use all traits if no rows are...checked and there are fewer than 100 traits in the table
* wqflask/wqflask/static/new/javascript/search_results.js - Created
get_traits_from_table function to get the list of traits and check if
none are selected, and also renamed the previous function also called
get_traits_from_table to submit_traits_to_export_or_bnw since that
better describes what the function does
| zsloan |
| 2020-08-19 | Show short labels by default in Correlation Matrix...* wqflask/wqflask/templates/correlation_matrix.html - remove display:
none for short label div
| zsloan |
| 2020-08-17 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-17 | Merge pull request #417 from BonfaceKilz/feature/pil-pillow-conversion...Resolve merge conflicts from Pil Pillow conversion branch | zsloan |
| 2020-08-18 | Fix positioning for many instances of text in the mapping figure...* wqflask/wqflask/marker_regression/display_mapping_results.py: Many text
instances had their positions changed by the switch from piddle to PIL. Change
various Y offsets and in some cases changing the logic of the way text is
positioned related to its length and font size.
* wqflask/wqflask/static/fonts/verdanab.ttf: Add bold Verdana, since there needs
to be a separate font file for bold text.
| zsloan |
| 2020-08-17 | Placed X/Y trait info before the table on the correlation scatterplot...page
* wqflask/wqflask/templates/corr_scatterplot.html - reordered table and
X/Y trait info divs
| zsloan |
| 2020-08-10 | Add fonts for pillow...* wqflask/wqflask/marker_regression/display_mapping_results.py: replace piddle
method with PIL.ImageFont
* wqflask/wqflask/static/fonts: Add fonts in path
| Pjotr Prins |
| 2020-08-08 | Add a basic test for test_display_marking_results.py...* wqflask/tests/wqflask/marker_regression/__init__.py: Add it
* wqflask/tests/wqflask/marker_regression/test_display_marking_results.py: Check
that PIL colors are being used instead of the deprecated Piddle colors.
| BonfaceKilz |
| 2020-08-08 | Change Y Coodinate system...* wqflask/wqflask/marker_regression/display_mapping_results.py: Piddle seemed to
centre text about the given Y coordinate, while Pillow requires specification to
top-left corner of the text. This slight change means text all over the image is
displaced somewhat, and this fixes the coordinate system for some of the text.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Fix placement for axes labels...* wqflask/wqflask/marker_regression/display_mapping_results.py: Fix the
placement for the axes labels.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Use TEXT_Y_DISPLACEMENT instead of magic numbers...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use
TEXT_Y_DISPLACEMENT instead of magic numbers to help with making it clear that
the drawn text is displaced somewhat.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Give rectangles black outlines...* wqflask/wqflask/marker_regression/display_mapping_results.py: Give the
rectangles black outlines to correspond to earlier drawings.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Use new `draw_open_polygon()` utility...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use the new
`draw_open_polygon()` utility to draw open polygons.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Add draw_open_polygon() utility...* wqflask/utility/pillow_utils.py: New method.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Replace "color" with "fill" keyword argument...* wqflask/wqflask/marker_regression/display_mapping_results.py:
(DisplayMappingResults): Pillow uses 'fill' in place of 'color'.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Use draw_rotated_text()...Use the new draw_rotated_text() function to draw the text rotated as was
formerly done.
* wqflask/utility/Plot.py (plotBar): Use draw_rotated_text().
* wqflask/wqflask/marker_regression/display_mapping_results.py:
(DisplayMappingResults) Use draw_rotated_text().
| Muriithi Frederick Muriuki |
| 2020-08-08 | Create new utility module for drawing...* wqflask/utility/pillow_utils.py: Create a module to hold some utility
functions for drawing with Pillow. Initialise the module with a function to draw
rotated text.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Fix font paths...* wqflask/utility/Plot.py: Update font paths.
* wqflask/fonts/ttf: Update font files.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Update SNP Browser to Pillow...* wqflask/wqflask/snp_browser/snp_browser.py: Use newer, and supported Pillow in
place of obsoleted Piddle library.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Add missing font files...* wqflask/fonts/ttf: Add ttf font files.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Migrate code from Piddle to Pillow...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add font files
(DisplayMappingResults): Update the code from the Piddle way of things to the
Pillow way of things, for example, replace:
- pid.drawRect(...) with im_drawer.rectangle(...)
- pid.drawString(...) with im_drawer.text(...)
- pid.drawPolygon(...) with im_drawer.polygon(...) etc.
* wqflask/utility/Plot.py: Migrate code from the older, unsupported Piddle to
the newer Pillow library.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Update the colours to use Pillow's ImageColor...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use Pillow's ImageColor module in place of the older Piddle colours.
| Muriithi Frederick Muriuki |
| 2020-08-07 | Move wqflask/tests/api to wqflask/tests/wqflask...* wqflask/tests(api): Move all the files here to tests/wqflask. The test dir
should mirror the actual module structure
| BonfaceKilz |
| 2020-08-06 | Added endpoint for changing some user details...* wqflask/wqflask/user_session.py - Added endpoint for /manage/user that
lets the user change their full_name or organization. Still need to add
something that lets them change their e-mail, since that will require a
confirmation
| zsloan |
| 2020-08-06 | Made a change that should fix the issue with the Y axis ticks extending...too high in mapping results
* wqflask/wqflask/marker_regression/display_mapping_results.py - When in
ful genome view, I changed it to subject the yTopOffset when drawing the
Y axis; single chromosome view seems to work okay so it's conditional on
that
| zsloan |
| 2020-08-05 | Set maximum width for trait page details in order to avoid long...summaries looking strange
* wqflask/wqflask/templates/show_trait_details.html - Set min-width of
table containing details to 1400px
| zsloan |
| 2020-08-04 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-04 | Simplified logic in the @before_request that checks user permissions...* wqflask/wqflask/views.py - Removed an if statement that was
unnecessary, because it already checks if dataset is either the string
"Temp" or of type "Temp"
| zsloan |
| 2020-08-04 | Reduced table cell margin a bit to make cell contents better align with...header
* wqflask/wqflask/static/new/css/show_trait.css - Changed right margin
from 20px to 15px to better account for the width of the sort arrows in
the header cell
| zsloan |
| 2020-08-04 | Merge pull request #415 from BonfaceKilz/tests/add-tests-for-gen-menu...Tests/add tests for gen menu | Pjotr Prins |
