Age | Commit message (Expand) | Author |
2013-01-25 | Added a bunch of things to notes | Zachary Sloan |
2013-01-25 | Merge branch 'flask' of http://github.com/zsloan/genenetwork into flask | Zachary Sloan |
2013-01-25 | Fixed a few bugs while trying to get the code running on the new server | Zachary Sloan |
2013-01-24 | Added a lot to the notes in the process of setting up on the...new server
| Zachary Sloan |
2013-01-23 | Added a bunch to notes and created new notes file specifically...related to installing a new instance of GN
| Zachary Sloan |
2013-01-22 | Added a couple things to notes regarding installing mysql client | Zachary Sloan |
2013-01-22 | Pushed through a few errors in getting the correlation page running | Zachary Sloan |
2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that
begins to do the actual correlations
Created a function "get_dataset_and_trait" in
the new file "helper_functions.py" because the
code initializing the dataset and trait objects
was repeated in multiple places
| Zachary Sloan |
2013-01-11 | Commented out import of rpy2 in correlationFunction.py due to...problem with rpy2
| Zachary Sloan |
2013-01-11 | Upgraded packages requirements.txt but haven't tested | Zachary Sloan |
2013-01-11 | Overwrote requirements.txt | Zachary Sloan |
2013-01-11 | Trimmed a bunch of code off of marker_regression.py | Zachary Sloan |
2013-01-10 | Checking in before we try to write our own code for the manhattan...plot figure`
| Zachary Sloan |
2013-01-10 | Checking in before trying to put manhattan plot sections closer together | Zachary Sloan |
2013-01-10 | Normalized the y axis for each manhattan plot section | Zachary Sloan |
2013-01-10 | The plots now correctly appear above/below each other....Committing before trying to combine all the manhattan plot
segments
| Zachary Sloan |
2013-01-10 | Edited marker_regression.coffee to make every sub-manhattan plot...for each chromosome display
Created css file for the marker_regression page
Currently has display issue where the permutation histogram is
overlapping with the manhattan plot
| Zachary Sloan |
2013-01-10 | Made Chromosome class in marker_regression.coffee; current...it writes each chromosome's manhattan plot on top of each
other. This commit is before trying to fix that.
| Zachary Sloan |
2013-01-10 | Made x-axis values into ints; committing before trying to add multiple graphs...for each chromosome
| Zachary Sloan |
2013-01-10 | Worked with the manhattan plot coffeescript to set x-axis and change...the plot point sizes and remove lines
| Zachary Sloan |
2013-01-09 | Manhattan plot results are appearing correctly for chromosome 1 | Zachary Sloan |
2013-01-09 | The histogram coffeescript is now in its own class and the graph...still displays correctly
| Zachary Sloan |
2013-01-09 | Checking in before putting the histogram coffeescript into its own...class
| Zachary Sloan |
2013-01-09 | More or less finished the permutation histogram | Zachary Sloan |
2013-01-09 | Got the permutation plot working as a line plot; still need to make...it into a bar graph, though
| Zachary Sloan |
2013-01-09 | jqplot added | Zachary Sloan |
2013-01-09 | Got the marker regression page to display again...Passed lrs_array values as js_data for the permutation histogram
| Zachary Sloan |
2013-01-08 | js_data is being printed out (seemingly) correctly now for the...marker_regression page
| Zachary Sloan |
2013-01-08 | Created IndChromosome class in species.py and wrote functions for...chromosome-related attributes
Began to try and pass qtlreaper results as js_data to use when
drawing graphs
| Zachary Sloan |
2013-01-08 | Deleted some unnecessary code in marker_regression.py and fixed some bugs...Added a couple utility functions to the Chromosomes class in species.py
| Zachary Sloan |
2013-01-04 | Continued rewriting marker_regression.py code | Zachary Sloan |
2013-01-04 | Correct results are being returned from reaper for the marker regression page | Zachary Sloan |
2013-01-03 | Began working on marker_regression.py and created Chromosomes class...in species.py
| Zachary Sloan |
2013-01-03 | marker_regression page is up again | Zachary Sloan |
2013-01-03 | Created template for marek regression page and made the compute button direct...to it
added asbolute_import in data_set.py and trait.py
Made several minor changes and deleted commented out code in trait.py
| Zachary Sloan |
2012-12-20 | Changed layout of marker regression options | Zachary Sloan |
2012-12-20 | The control locus field in the interval mapping settings is now disabled if..."choose closest control" is set to "yes"
| Zachary Sloan |
2012-12-20 | Made composite mapping options show/hide for the interval mapping section | Zachary Sloan |
2012-12-20 | More changes to the layout of interval mapping options | Zachary Sloan |
2012-12-20 | Continued to customize the interval mapping menu | Zachary Sloan |
2012-12-20 | Improved appearance/layout of the interval mapping tab using bootstrap | Zachary Sloan |
2012-12-20 | Form data passed via POST for marker regression...Removed "Use Parents" and "Use Weighted"
Created text box to input # permutations for pair scan
| Zachary Sloan |
2012-12-18 | Changed html for the marker regression tab...Created file show_trait_mapping_tools.coffee to handle
submitting the form to the marker regression page
Changed form name/id in show_trait.html to "trait_data_form"
| Zachary Sloan |
2012-12-18 | Created new file species.py and species class object TheSpecies...Converted html for the mapping tabs to bootstrap and redid html inside of
the Interval Mapping tab
Added text input for # of permutation tests and bootstrap tests
| Zachary Sloan |
2012-12-07 | Got links working for statistics table labels | Zachary Sloan |
2012-12-07 | Got basic statistics in show_trait to display the correct number...of samples for each group
Got show_trait page to display for genotype traits
| Zachary Sloan |
2012-12-07 | Got show_trait page to appear again for phenotype traits...Need to see why other samples list doesn't appear for traits in BXDPublishedPhenotypes
| Zachary Sloan |
2012-12-06 | All 10 stats working | Zachary Sloan |
2012-12-06 | Continued work on basic statistics table in show_trait...Continued work towards getting show_trait to work with phenotype traits
| Zachary Sloan |
2012-12-06 | Added minimum/maximum to basic statistics table...Continued bug-shooting related to getting show_trait running
with phenotype traits
| Zachary Sloan |