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AgeCommit message (Expand)Author
2012-12-05Continued to make changes related to getting rid of cursor/db_conn...and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again Zachary Sloan
2012-12-04Changed parser to allow quotes (i.e. name="rw williams")...Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy Zachary Sloan
2012-12-04Began changing references to cursor/db_conn to use sqlalchemy...Wrote function for phenotype author searches Zachary Sloan
2012-11-30Added example of escaping strings now that trasitioning to simple SQLAlchemyZachary Sloan
2012-11-30Started switching to using basic sqlalchemy to handle db connection/queries...Began fixing bugs related to this fix, still in progress Zachary Sloan
2012-11-30Finished pValue search...Got headers working in search page Zachary Sloan
2012-11-30Got searches working for RANGE and MEAN commands...Created a file where renamed variables will be listed for future reference Zachary Sloan
2012-11-29Changed a number of variables (riset to group, db to dataset)...Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes Zachary Sloan
2012-11-29Got LRS searches working with 5 parametersZachary Sloan
2012-11-28Got cisLRS search working (in web service) for searches with > or < (ex. LRS>99)...search_term is always a list now ([99] in the example LRS>99) Zachary Sloan
2012-11-28Changed parser to split by ">=" and "<="Zachary Sloan
2012-11-28Changed parser.py to deal with the wild card character (*) and to split by...">" and "<" in addition to "=" and ":" Zachary Sloan
2012-11-28Made some small changes to get code working for genotype searchesZachary Sloan
2012-11-27Created subclass for each main data set type and moved the code...for getting trait info that was in search_results.py into its respective class Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py, webqtlDatabaseFunction.py, and CorrelationPage.py Got search page running again for mRNA assay data sets with these changes Zachary Sloan
2012-11-27Renamed webqtlDataSet.py to data_set.py...Renamed the class webqtlDataset to DataSet Finished cisLRS and transLRS search types in d_search.py Fixed parent/f1 issue in show_trait.py Zachary Sloan
2012-11-21Changed parser to allow for bother square brackets and parentheses...Changed show_trait.coffee to get the stats table working again Still need to get stats table to work with changed values Zachary Sloan
2012-11-21Trimmed a large amount of code from search_results.py...Removed everything related to drawing html; finished code for getting info for Phenotype and Genotype result tables Did some more with CisLRS and TransLRS searches Put something in parser about using square brackets as well as parentheses Edited template for other table types (Geno and Pheno) Zachary Sloan
2012-11-16Made small change to parser to have it detect square brackets '[' along with...round ones '('; need to ask Sam about rewriting the regular expression stuff Trimmed a lot of code from search_results.py Zachary Sloan
2012-11-09Did some work with adding code for LRS-related searchesZachary Sloan
2012-11-02Created search objects for GeneRIF and GeneWiki searches...Got search results to display Refactored the template for show_trait page Zachary Sloan
2012-11-01Changed the if/elif statements for the different dataset types to...use a dictionary instead Zachary Sloan
2012-11-01Began integrating do_search.py's DoSearch object into search_results.py,...with simple searches returning correct results Still need to make results display in the table Sam also did some work with the bootstrap styling Zachary Sloan
2012-10-31Did work with writing the search page query functions for some ProbeSet and P...Zachary Sloan
2012-10-30Worked on search_result.py code related to adding clause item to queries...Continued work on redesigning the trait data page design Zachary Sloan
2012-10-30Did some work converting show_trait.html to using bootstrap for stylingZachary Sloan
2012-10-26Changed search page appearance using bootstrap...Headers/information displays correctly for single mRNA expression trait searches Zachary Sloan
2012-10-26Put footer/head into base.html; was previously just in index_page.htmlZachary Sloan
2012-10-26Got search page working for mice with a single gene searchZachary Sloan
2012-10-25Worked on search page code; got to the part that actually does the search...Renamed RISet and cross to "group" throughout webqtlDataset.py and search_results.py Zachary Sloan
2012-10-25Created header and set defaults for the search dropdown optionsZachary Sloan
2012-10-25Got the Make Default option working on the home pageZachary Sloan
2012-10-25Looks like the code that imports logging was changed in runserver.py...Small change to the code printing out fd in search_results.py Zachary Sloan
2012-10-24Now builds json datastructure for menus correctlyZachary Sloan
2012-10-23Worked on the "Make Default" cookie codeZachary Sloan
2012-10-23Finished coffeescript that handles the home page dataset selection dropdownsZachary Sloan
2012-10-19Finished gen_select_dataset.py which generates the json file that defines the...data structure used for the index page select dropdowns Zachary Sloan
2012-10-19Reindented genSelectDatasetJS as gen_select_datasetZachary Sloan
2012-10-18Tried to make sense of existing code in select_dataset_menu.js/coffee, decide...Zachary Sloan
2012-10-18Fixed spacing on coffeescript fileZachary Sloan
2012-10-18small changesZachary Sloan
2012-10-18Converted selectDatasetMenu.js code to coffeescript as dataset_select_menu.co......Copied the menu variables from selectDatasetMenu.js as dataset_select_items.js Zachary Sloan
2012-10-17Fixed bug in an SQL query, changed search field id from "ORkeyword" to "searc...Zachary Sloan
2012-10-12New home page beginning to look goodZachary Sloan
2012-10-12Continued work on new_index_pageZachary Sloan
2012-10-12Changed export code to use csv moduleZachary Sloan
2012-10-12Finished getting trait data to export as a download prompt...Sam worked on the new index page model that uses bootstrap Zachary Sloan
2012-10-11Worked with the export code and Sam worked on a redesigned index pageZachary Sloan
2012-10-11Got sample table data from the trait page sent to the export python codeZachary Sloan
2012-10-10Finished the remove samples by index validationZachary Sloan
2012-10-10Got the validation code for remove samples by index mostly workingZachary Sloan
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