genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-03-27	Worked on trying to get results for quick search to display	Zachary Sloan
2013-03-26	Continued working on quick_search_table.py, which now gets	Zachary Sloan
2013-03-26	Created quick_search_table.py to create table with all of the	Zachary Sloan
2013-03-26	Just checking in code while in the process of trying to get	Zachary Sloan
2013-03-22	Began creating templates for login/registration	Zachary Sloan
2013-03-22	Added secure_server.py	Zachary Sloan
2013-03-22	Removed zach_settings.py from git tracking	Zachary Sloan
2013-03-21	Did some work towards getting Nick's code working with our plink	Zachary Sloan
2013-03-19	In the process of trying to use Nick's pylmmKinship.py code to	Zachary Sloan
2013-03-19	Added Nick's input.py file which uses plink .ped files as input	Zachary Sloan
2013-03-19	Searches work for the full access human datasets with mRNA assay	Zachary Sloan
2013-03-15	Began work with implementing general search	Zachary Sloan
2013-03-15	Changes related to searching for selected points in marker regression plot	Zachary Sloan
2013-03-13	Merge branch 'flask' of http://github.com/zsloan/genenetwork into flask	Zachary Sloan
2013-03-13	Added some to notes	Zachary Sloan
2013-03-12	Added the script generating probesetfreeze data matrix files	Zachary Sloan
2013-03-12	Highlighting points works in Firefox but still doesn't work in chrome	Zachary Sloan
2013-03-12	Got cashing working with pickle	Zachary Sloan
2013-03-09	Trying to get caching working with pickle now	Zachary Sloan
2013-03-08	Caching is working for marker regression but really slowly	Zachary Sloan
2013-03-08	Refactored GWAS function in lmm.py	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan
2013-03-07	Have first 45% of progress bar working	Zachary Sloan
2013-03-07	Created file temp_data to store data related to progress	Zachary Sloan
2013-03-06	Stored percent of calculate_kinship function completion in	Zachary Sloan
2013-03-06	Improved positioning/size of copy/print/save buttons for	Zachary Sloan
2013-03-05	Implemented DataTables; there are now options to download the marker	Zachary Sloan
2013-03-02	Created generate_probesetfreeze_file to create the	Zachary Sloan
2013-02-28	Updated benchmark.py to aggregate run times when you run the	Zachary Sloan
2013-02-28	Added benchmark.py that compares the time of various operations	Zachary Sloan
2013-02-28	Chromosome labels on marker regression plot are centered	Zachary Sloan
2013-02-23	A static progress bar now displays when loading the marker regression results	Zachary Sloan
2013-02-22	Added some to notes	Zachary Sloan
2013-02-21	Added underscore.js	Zachary Sloan
2013-02-21	Adding genotypes and new_genotypes (json files) directories to git	Zachary Sloan
2013-02-21	Add my_pylmm package	Zachary Sloan
2013-02-21	Plot points and chromosome lines are now correct	Zachary Sloan
2013-02-20	Did more work with manhattan plot, trying to fix a small issue	Zachary Sloan
2013-02-20	Created y-axis	Zachary Sloan
2013-02-19	Manhattan plot and chromosome lines are all correct now	Zachary Sloan
2013-02-19	Made lines for manhattan plot proportional to chromosome lengths	Zachary Sloan
2013-02-15	Points are labeled with marker names and hovering causes the LRS	Zachary Sloan
2013-02-15	Made it to where hovering over a point in the manhattan plot changes	Zachary Sloan
2013-02-15	Created lines in marker regression scatter plot separating	Zachary Sloan
2013-02-14	Put coffeescript code for manhattan plot into a class/functions	Zachary Sloan
2013-02-14	Have marker regression results displaying as a scatterplot (just the points)	Zachary Sloan
2013-02-13	Got results displaying for BXD and fixed genofile_parser.py to work	Zachary Sloan
2013-02-13	Got results for marker regression page displaying in table	Zachary Sloan
2013-02-13	Fixed some bugs related to getting the marker regression page working	Zachary Sloan
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan