| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-11-13 | Replaced superscript i's for glossary links in search result table | zsloan | |
| headers with fontawesome icons | |||
| 2020-11-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
| feature/corr_table_changes | |||
| 2020-11-11 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2020-11-11 | Added Bonface to the footer | zsloan | |
| 2020-11-11 | Changed some column widths and removed the width for description so it can ↵ | zsloan | |
| vary with page width | |||
| 2020-11-11 | - Fixed an issue causing the phenotype abbreviation to not be displayed ↵ | zsloan | |
| properly in correlation results - Set default description to N/A when there's no trait description for phenotype traits | |||
| 2020-11-11 | Switched checking if a trait is confidential to checking if it has a pubmed ↵ | zsloan | |
| ID for the purposes of showing pre-publication abbreviation/description | |||
| 2020-11-11 | Merge pull request #477 from BonfaceKilz/feature/add-glossary-page | BonfaceKilz | |
| Feature/add glossary page | |||
| 2020-11-11 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | BonfaceKilz | |
| feature/add-glossary-page | |||
| 2020-11-11 | Update image width | BonfaceKilz | |
| 2020-11-11 | Add basic markdown styling | BonfaceKilz | |
| * wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container. | |||
| 2020-11-10 | Changed logic for creating temp trait SampleList to account for both traits ↵ | zsloan | |
| encoded as bytes and traits encoded as strings, since temp traits created before and after the Python 3 switchover will have different encoding | |||
| 2020-11-10 | * wqflask/wqflask/correlation/show_corr_results.py - Changed some of the ↵ | zsloan | |
| parameters sent to the correlation table * wqflask/wqflask/templates_correlation_page.html - Fixed some column defs and removed unused table configuration code | |||
| 2020-11-10 | Fixed issue where strain values in bytes needed to be decoded when loading a ↵ | zsloan | |
| Temp trait | |||
| 2020-11-10 | Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and ↵ | zsloan | |
| using the wrong name was causing correlations to not work. | |||
| 2020-11-10 | Added CSS file for all pages that include a table of traits | zsloan | |
| 2020-11-10 | Add missing links and some markdown formatting(underline, bold) | BonfaceKilz | |
| * wqflask/wqflask/static/markdown/glossary.md: Update file. | |||
| 2020-11-06 | Removed the page selection from the top of the table because it created an ↵ | zsloan | |
| awkward gap between the column show/hide buttons and the table, and this table will be changed to use Scroller instead of paging soon regardless | |||
| 2020-11-06 | Changed the show/hide column buttons to use DataTables API + a few other ↵ | zsloan | |
| changes (for some reason none of my changes could be pushed from one of my local branches to origin/testing, so they're combined in this commit) - Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection) | |||
| 2020-11-06 | Added min-width for the divs containing the analysis tools and table ↵ | zsloan | |
| options, since they would look weird if the window shrunk below a certain width Also made some indentation more consistent | |||
| 2020-11-06 | Added new css file for pages that have trait list tables (not sure what else ↵ | zsloan | |
| to call them, but pages like search results, view collection, and correlation results) | |||
| 2020-11-06 | Increased the min-width for the show_trait page container div for all the ↵ | zsloan | |
| accordion sections, since previously it could get too narrow and cause text to extend beyong the borders of each accordion area | |||
| 2020-11-06 | After I changed some class names in the trait page to use - instead of _ (to ↵ | zsloan | |
| keep naming consistent) I forgot to change the references in show_trait_mapping_tools.js (which broke the functionality of clicking a tab doing mapping) | |||
| 2020-11-05 | Converted correlation table for ProbeSet target datasets to use the JSON ↵ | zsloan | |
| input and removed the unused table html | |||
| 2020-11-05 | Added some additional necessary fields to generate_corr_json in ↵ | zsloan | |
| show_corr_results.py | |||
| 2020-11-05 | Removed html from generate_corr_json since that will be done by the column ↵ | zsloan | |
| definitions after passing the data to DataTables as JSON | |||
| 2020-11-05 | Imported Scroller and used it with correlation page table | zsloan | |
| 2020-11-04 | Merge pull request #480 from zsloan/bug/correlation_sort_fix | zsloan | |
| Fix sorting on the Tissue and Literature r/rho columns in correlation page | |||
| 2020-11-04 | Changed numeric-html sorting for the Tissue/Lit r columns to ↵ | zsloan | |
| natural-minus-na so it deals with the "--" values * wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns | |||
| 2020-11-04 | Use new glossary link from glossary_blueprint in html templates | BonfaceKilz | |
| 2020-11-04 | Add missing image | BonfaceKilz | |
| 2020-11-04 | Add link markers to elements which are referenced from elsewhere | BonfaceKilz | |
| 2020-11-04 | Update test_markdown_routes | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py (test_render_markdown_when_fetching_locally): Fix failing test. | |||
| 2020-11-04 | Add an edit link button to glossary page | BonfaceKilz | |
| 2020-11-04 | Wrap rendered content in div container | BonfaceKilz | |
| 2020-11-04 | Update glossary markdown file | BonfaceKilz | |
| 2020-11-04 | Merge pull request #475 from Alexanderlacuna/test-showtrait | BonfaceKilz | |
| Add more tests for show trait module | |||
| 2020-11-04 | correct a typo | Alexanderlacuna | |
| 2020-11-04 | remove extra whitespace | Alexanderlacuna | |
| 2020-11-04 | remove whitespace in line 119-120 | Alexanderlacuna | |
| 2020-11-04 | remove whitespace | Alexanderlacuna | |
| 2020-11-04 | remove whitespace and assertIs | Alexanderlacuna | |
| 2020-11-04 | Use python3-genenetwork2 docker image on commit 0bf4ee6 | BonfaceKilz | |
| 2020-11-03 | Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix | zsloan | |
| Bug/haplotype analyst error fix | |||
| 2020-11-03 | Changed the syntax for the "sort" function in the docstring of GeneralObject ↵ | zsloan | |
| to be compatible with Python 3 syntax * wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 | |||
| 2020-11-03 | Fixed a sort used when doing the haplotype analysis to be compatible with ↵ | zsloan | |
| Python 3 * wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible | |||
| 2020-11-03 | Fix false-positive tests | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py: (MockRequests404): Pass self in all properties. (MockRequests200): Ditto. (test_render_markdown): Rename to test_render_markdown_when_fetching_locally. (test_render_markdown_when_fetching_remotely): New test. | |||
| 2020-11-03 | Merge pull request #478 from zsloan/loading_page_n_fix | zsloan | |
| Joined sample names in primary_samples and all_samples with commas be… | |||
| 2020-11-03 | Joined sample names in primary_samples and all_samples with commas because ↵ | zsloan | |
| this list was being split to get the N of samples; not sure why this was working before * wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen | |||
| 2020-11-03 | Delete file | BonfaceKilz | |
| * wqflask/tests/integration/test_glossary.py: Delete it. Earlier renamed to test_markdown_routes. | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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