genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2022-06-23	Change some variables in search_result_page.html to camelCase	zsloan

2022-06-23	Remove HTML table from collections/view.html and replace with list of	zsloan
	column definitions passed to create_datatable.js
2022-06-23	Change tableSettings in loadDataTable parameters to customSettings	zsloan

2022-06-23	Change jsonable in GeneralTrait so that it passes all necessary table	zsloan
	information
2022-06-23	Convert trait.view to string for conversion to JSON	zsloan
	It's originally a boolean, which causes an error when passed to the JS code as JSON
2022-06-23	Change create_datatable.js from CRLF to LF + fix a couple syntax bugs	zsloan

2022-06-23	Pass table data to collections/view template and create_table.js	zsloan

2022-06-16	Change table_functions.js variables to camelCase	zsloan

2022-06-16	Replace DataTables code in collection view page with call to new create_table.js	zsloan

2022-06-16	Initial commit for create_datatable.js	zsloan
	This file will contain the generic function for initializing datatables, that will take the table ID, table data, column definitions, and custom settings as input (custom settings being additional DataTables settings or settings differing from the defaults)
2022-06-16	Include json version of collection trait list, so it can be passed directly ↵	zsloan
	to DataTables
2022-06-15	templates: base: Update GN2 footer	BonfaceKilz
	* wqflask/wqflask/templates/base: Remove links to non-functioning mailing list. Remove link to "#genenetwork" channel that isn't currently owned/moderated. Co-authored-by: Ethan Willis <elwillis1@gmail.com>
2022-06-13	Check chromosome for 'Un' in search results and print N/A in such cases	zsloan

2022-06-13	Check for chromosome of 'Un' and print location as 'Not available' in such cases	zsloan

2022-06-13	Increase width threshold for using scroller, to prevent issue with blue ↵	zsloan
	lines at bottom of table
2022-06-13	Limit search result descriptions to 500 characters	zsloan

2022-06-13	Add \|safe to ensure HTML entites are correctly escaped for trait descriptions	zsloan

2022-06-10	Skip failing integration test	BonfaceKilz
	ATM, it's hard to by-pass the authentication decorators, and as such, skip this test for. This may be deleted later.
2022-06-10	Reverse polarity for gemma additive effects in tests	BonfaceKilz
	Fixes broken test. See: #89a7868.
2022-06-07	Define gn_server_url before running the drop-down menu JS code	zsloan

2022-06-07	Make indentation and spacing more consistent for	zsloan
	dataset_select_menu_orig.js
2022-06-07	Fix issue that caused Submit Trait page drop-down menus to not work	zsloan
	Also removes a bunch of unnecessary console logging
2022-06-03	Give speciesid single quotes like the other config_dic keys, just for ↵	zsloan
	consistency
2022-06-03	Allow GenoFreezeId to be passed in configurations to load_genotypes.py	zsloan

2022-06-01	Fix the way R/qtl is called in the GN2 REST API	zsloan

2022-06-01	Remove IDs called 'submit' to prevent forms from breaking	zsloan
	Apparently if a button has an ID called 'submit', trying to submit a form via JS won't work
2022-05-31	Check if entered pubmed_id is already associated with a publication, and	zsloan
	set PublishXRef.PublicationId equal to that Id if it exists
2022-05-31	Reverse polarity for gemma additive effects	zsloan
	This is basically just a quick pseudo-fix to at least get the polarity right
2022-05-31	Fix minor bug	Frederick Muriuki Muriithi

2022-05-31	Fix error rendering	Frederick Muriuki Muriithi
	Render the command_id if present in the error report to help with troubleshooting failures.
2022-05-27	Apply python-black on file	BonfaceKilz

2022-05-27	Don't make a POST if there's a blank form-element	BonfaceKilz

2022-05-27	Move SQL queries to GN3	BonfaceKilz

2022-05-27	Strip data before storing it	BonfaceKilz

2022-05-27	Make sure the user is logged in when approving data	BonfaceKilz

2022-05-27	Pass secend arg to cursor.execute as a tuple	BonfaceKilz

2022-05-27	Add sensible styling to "reject"/"approve" buttons	BonfaceKilz

2022-05-27	Align "Add New" button with the actions column	BonfaceKilz

2022-05-27	Add js logic to POST to "approval" endpoint	BonfaceKilz

2022-05-27	Assign the correct value to key	BonfaceKilz

2022-05-27	Display description diff-data if it exists	BonfaceKilz

2022-05-27	Ony show the title if there are any changes to be approved/rejected	BonfaceKilz

2022-05-27	Cosmetic changes in Jinja template	BonfaceKilz

2022-05-27	Add new endpoint for "approving" case-attributes modifications	BonfaceKilz
	* wqflask/wqflask/metadata_edits.py (approve_case_attribute_data): New end-point.
2022-05-27	Remove dead comment	BonfaceKilz

2022-05-27	Append to "modifications" if "description"/"name" exist	BonfaceKilz

2022-05-27	Make sure is in editor's group to view the case-attributes	BonfaceKilz
	* wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Add "case_attributes_edit_access" and "login_required" decorators.
2022-05-27	Make sure user is part of "editors" group to make (case attrs) edits	BonfaceKilz
	* wqflask/wqflask/decorators.py: Import "gn3.authentication.get_groups_by_user_uid". (case_attributes_edit_access): New decorator. Checks which users are in the "editors" group in Redis. * wqflask/wqflask/metadata_edits.py: Import "wqflask.decorators.case_attributes_edit_access" (update_case_attributes): Use "@update_case_attributes" decorator. (reject_case_attribute_data): Ditto.
2022-05-27	Replace "_get_author" with "gn3.authentication.get_user_info_by_key"	BonfaceKilz
	* wqflask/wqflask/metadata_edits.py (_get_author): Delete function. (show_case_attribute_columns): Use "get_user_info_by_key".
2022-05-27	Implement "reject"---for case-attr---endpoint	BonfaceKilz
	* wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): Fetch id---this is already passed in the template---when getting case attributes. (reject_case_attribute_data): New endpoint for rejecting data. * wqflask/wqflask/templates/case_attributes.html: Add JS logic for rejecting data.