Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-11-05 | Added some additional necessary fields to generate_corr_json in ↵ | zsloan | |
show_corr_results.py | |||
2020-11-05 | Removed html from generate_corr_json since that will be done by the column ↵ | zsloan | |
definitions after passing the data to DataTables as JSON | |||
2020-11-05 | Imported Scroller and used it with correlation page table | zsloan | |
2020-11-04 | Merge pull request #480 from zsloan/bug/correlation_sort_fix | zsloan | |
Fix sorting on the Tissue and Literature r/rho columns in correlation page | |||
2020-11-04 | Changed numeric-html sorting for the Tissue/Lit r columns to ↵ | zsloan | |
natural-minus-na so it deals with the "--" values * wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns | |||
2020-11-04 | Merge pull request #475 from Alexanderlacuna/test-showtrait | BonfaceKilz | |
Add more tests for show trait module | |||
2020-11-04 | correct a typo | Alexanderlacuna | |
2020-11-04 | remove extra whitespace | Alexanderlacuna | |
2020-11-04 | remove whitespace in line 119-120 | Alexanderlacuna | |
2020-11-04 | remove whitespace | Alexanderlacuna | |
2020-11-04 | remove whitespace and assertIs | Alexanderlacuna | |
2020-11-03 | Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix | zsloan | |
Bug/haplotype analyst error fix | |||
2020-11-03 | Changed the syntax for the "sort" function in the docstring of GeneralObject ↵ | zsloan | |
to be compatible with Python 3 syntax * wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 | |||
2020-11-03 | Fixed a sort used when doing the haplotype analysis to be compatible with ↵ | zsloan | |
Python 3 * wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible | |||
2020-11-03 | Merge pull request #478 from zsloan/loading_page_n_fix | zsloan | |
Joined sample names in primary_samples and all_samples with commas be… | |||
2020-11-03 | Joined sample names in primary_samples and all_samples with commas because ↵ | zsloan | |
this list was being split to get the N of samples; not sure why this was working before * wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen | |||
2020-11-03 | Update issue and PR templates | BonfaceKilz | |
* .github/ISSUE_TEMPLATE/bug_report.md: Provide explanations in commented out blocks. * .github/ISSUE_TEMPLATE/feature_request.md: Ditto. * .github/PULL_REQUEST_TEMPLATE.md: Ditto. * .github/ISSUE_TEMPLATE/user_story.md: Ditto. | |||
2020-11-03 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexanderlacuna | |
test-showtrait | |||
2020-11-03 | remove unnecessary comments | Alexanderlacuna | |
2020-11-03 | add pep8 formatting | Alexanderlacuna | |
2020-11-03 | add tests for the get_categorical_variables function | Alexanderlacuna | |
2020-11-03 | switch from assertFalse to assertIs | Alexanderlacuna | |
2020-11-03 | Remove stale file | BonfaceKilz | |
* jquery.qtip.css: Delete it. | |||
2020-11-03 | switch from assertTrue/False to assertIs to make the tests tighter | Alexanderlacuna | |
2020-11-03 | use assertTrue and assertFalse in while testing boolean | Alexanderlacuna | |
2020-11-02 | Merge pull request #476 from zsloan/correlation_errors_fix | zsloan | |
Correlation errors fix | |||
2020-11-02 | Created function for encoding the column value as bytes when fetching from ↵ | zsloan | |
the JSON-formatted string pulled from Redis (since this was needed after the Python 3 switchover) * wqflask/utility/redis_tools.py - Created function load_json_from_redis that encodes the key (column_value) when fetching a value from the JSON pulled from Redis | |||
2020-11-02 | Changed correlation page logic to skip over traits that share fewer than 6 ↵ | zsloan | |
samples + traits that user doesn't have permission to access * wqflask/wqflask/correlation/show_corr_results.py - Moved the num_overlap check so that it never attempts to calculate the correlation if it's too low + checked if trait_object is None in the main loop (since it would be returned as None if the user doesn't have permissions | |||
2020-11-02 | add better formatting | Alexanderlacuna | |
2020-11-02 | add function docstring | Alexanderlacuna | |
2020-11-02 | add tests for show trait module | Alexanderlacuna | |
2020-11-01 | Merge pull request #472 from Alexanderlacuna/test-branch | BonfaceKilz | |
Adding more Test for show_trait module | |||
2020-10-31 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexanderlacuna | |
test-branch | |||
2020-10-31 | Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ↵ | zsloan | |
the potential to cause an axis tick to appear above the figure * wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis | |||
2020-10-31 | remove redundant classes | Alexanderlacuna | |
2020-10-31 | use descriptive variable names | Alexanderlacuna | |
2020-10-31 | Use more descriptive variable and class names | Alexanderlacuna | |
2020-10-30 | Merge pull request #474 from zsloan/mapping_y_axis_fix | zsloan | |
Mapping Y Axis Fix | |||
2020-10-30 | Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ↵ | zsloan | |
the potential to cause an axis tick to appear above the figure * wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis | |||
2020-10-30 | add test for get_export_metadata | Alexanderlacuna | |
2020-10-30 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexanderlacuna | |
test-branch | |||
2020-10-29 | Merge pull request #473 from zsloan/reaper_bootstrap_fix | zsloan | |
Reaper bootstrap fix | |||
2020-10-29 | Fixed issue with single-chromosome mapping after the bootstrap fix and fixed ↵ | zsloan | |
error that occurred if either bootstrap or permutations were set to 0 * wqflask/wqflask/marker_regression/display_mapping_results.py - Cast self.qtlresults 'chr' as a string since the comparison between it and the chromosome names was faililng due to numeric chromosomes being int type + used a list comprehension that converts None to an empty string when creating a comma-joined string from the list of mapping output files | |||
2020-10-29 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
reaper_bootstrap_fix | |||
2020-10-29 | add test for show_trait | Alexanderlacuna | |
2020-10-29 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexanderlacuna | |
test-branch | |||
2020-10-29 | Merge pull request #469 from BonfaceKilz/bug/fix-cookies-verification | BonfaceKilz | |
Bug/Fix cookie verification bug | |||
2020-10-29 | resolve merge conflict | Alexanderlacuna | |
2020-10-29 | format file | Alexanderlacuna | |
2020-10-29 | remove print statement in for loop | Alexanderlacuna | |