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* Update the indexes mappings to be compatible with the newer
Elasticsearch 6.2.* series.
Close the index before updating it, and reopen it after to help with
the re-indexing of the data.
* Update the error logger to include the exception that was thrown.
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* Prevent elasticsearch from analysing and tokenising the email_address
field so as to avoid issue with getting back all email addresses with
the same domain as the one being searched for.
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* Add tests to ensure the "Forgot Password" feature works appropriately.
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* Use existing code to get the elasticsearch connection. This should
prevent tests from failing in case the way connections to
elasticsearch are made change.
* Delay a while after deleting to allow elasticsearch to re-index the
data, thus preventing subtle bugs in the test.
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* Ensure the return is at the correct indentation level so that it is
executed correctly.
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* Ensure that the user actually provides an email address when they try
to use the forgot password feature.
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* Use the LOG_LEVEL provided by the application settings to enable easy
control of logging when running tests. It helps avoid a lot of
verbosity when running tests.
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* Remove the run-integration-tests.py, and use the test-website.py as
the entry point for all tests. This simplifies running the tests for
the site.
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Remove TableTools.js
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This patch removes TableTools. I don't think we use it. I have compared the look and feel
of below pages and I see no difference. If that is correct we can simply ditch it by
merging this PR. Note that if we are using such functionality this package is considered
obsolete by the authors.
According to https://datatables.net/extensions/tabletools/:
This extension has now been retired and has been replaced by the
Buttons and Select extensions. The documentation is retained for
legacy reference only. New projects should use Buttons and Select in
preference to TableTools. Moving Tabletools CSS
--- a/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css
+++ b/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css
@@ -319,3 +319,8 @@ div.DTTT_collection a.DTTT_button {
line-height: 20px;
}
+.no-sort::after { display: none!important; }
+.no-sort { pointer-events: none!important;
+ cursor: default!important;
+}
+
wqflask/wqflask/templates/correlation_matrix.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/collections/list.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/search_error.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/corr_scatterplot.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/pair_scan_results.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
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Testing rm validation plugin
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Testing rm bloat
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https://github.com/genenetwork/genenetwork2/issues/310
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Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE.
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testing
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Minor edits and document on ES
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Removed a variety of scripts that weren't being used on the trait page
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@acenteno added data upload scripts into main repo
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Testing rm bloat (jqplot and ckeditor)
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Testing
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Config files are store in https://github.com/genenetwork/gn-deploy-servers repo
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testing
* Fix conflicts
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