| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-01-26 | Dump metadata in addition to sample data. | Munyoki Kilyungi | |
| * scripts/sampledata: Dump metadata in addition to data. | |||
| 2023-01-26 | oauth2: UI: Rework user dashboard UI | Frederick Muriuki Muriithi | |
| Separate the roles, resources and group information from the overview page. | |||
| 2023-01-25 | mechanical-rob: corrs: Activate tests. Print out whitespace | Frederick Muriuki Muriithi | |
| * Activate the correlation correctness tests * Print out whitespace characters in such a form that allows visual comparison of differences to help with fixing issues caught by tests. | |||
| 2023-01-25 | mechanical-rob: move newline | Frederick Muriuki Muriithi | |
| 2023-01-25 | mechanical-rob: Fix bugs with corrs test | Frederick Muriuki Muriithi | |
| * Replace CRLF in html output with newline to prevent equality comparisons from failing if that's the only difference. * Only include failures that have actual content: filter out empty failure items * Print out an extra newline on completion of checks | |||
| 2023-01-24 | mechanical-rob: update corrs tests and clean up data | Frederick Muriuki Muriithi | |
| 2023-01-24 | scripts: Provide help info for script. | Frederick Muriuki Muriithi | |
| 2023-01-24 | correlations: Escape strings for html | Frederick Muriuki Muriithi | |
| Improves upon commit 63aff5ca22cfb5caaa38ac1d737afa48fc8dbf02 | |||
| 2023-01-24 | mechanical-rob: eliminate extraneous spaces before comparisons | Frederick Muriuki Muriithi | |
| 2023-01-23 | oauth2: create group | Frederick Muriuki Muriithi | |
| Enable creation of a new group. | |||
| 2023-01-23 | oauth2: Retain email input, and "next uri" on error | Frederick Muriuki Muriithi | |
| Retain the "next uri" and the email the user had input in the case of an error, so that the user has the chance to correct their input, and still get to the uri they originally intended to (on success). | |||
| 2023-01-21 | oauth2: Cleanup fetching of roles and groups. Update template. | Frederick Muriuki Muriithi | |
| 2023-01-20 | Make dump script faster by using concurrency module | Munyoki Kilyungi | |
| 2023-01-20 | Dump all sample data into a given directory | Munyoki Kilyungi | |
| * scripts/sampledata.py: Import gen_dropdown_json. (main): Dump all the sample data from all the datasets into a given directory. | |||
| 2023-01-20 | Return a trait's display name if the name is non-existent | Munyoki Kilyungi | |
| * scripts/sampledata.py (fetch_all_traits): Should the name of a trait not exists, e.g. in probeset data, return it's display name. | |||
| 2023-01-20 | Update demo to dump entire dataset for BXDPublish | Munyoki Kilyungi | |
| * scripts/sampledata.py: Import os and sys. <__name__>: Add demo to dump "BXDPublish" dataset. | |||
| 2023-01-20 | Remove hard-coded values | Munyoki Kilyungi | |
| * scripts/sampledata.py (dump_sample_data): Remove hard-coded values for trait_id and dataset_name. | |||
| 2023-01-20 | Fix typo | Munyoki Kilyungi | |
| 2023-01-20 | Add example that demos dumping data from an entire dataset | Munyoki Kilyungi | |
| 2023-01-20 | Add a function that fetches all the traits given the right params | Munyoki Kilyungi | |
| * scripts/sampledata.py (fetch_all_traits): New function. | |||
| 2023-01-20 | Create script to dumple sample data given the dataset and trait id | Munyoki Kilyungi | |
| * scripts/sampledata.py: New file. | |||
| 2023-01-20 | oauth2: Add user-profile template and dummy endpoints | Frederick Muriuki Muriithi | |
| * wqflask/wqflask/oauth2/routes.py: add some dummy endpoints to be fleshed out * wqflask/wqflask/templates/oauth2/view-user.html: Add missing template for the /user-profile endpoint | |||
| 2023-01-20 | oauth2: Revoke token on logout | Frederick Muriuki Muriithi | |
| If a user logs out of the session, and their token is not revoked, if their token were to leak somehow, then an attacker could use it before it expired. Explicit revocation of the token helps avoid that. | |||
| 2023-01-19 | Replace angle brackets in trait descriptions for correlation results, since ↵ | zsloan | |
| previously it wasn't showing some e-mail addresses (in brackets) | |||
| 2023-01-19 | oauth2: Implement user registration. | Frederick Muriuki Muriithi | |
| 2023-01-19 | Feature/toggle switch caching (#762) | Alexander Kabui | |
| * add optional use cache checkbox * add check for use_cache | |||
| 2023-01-12 | Add BXD-NIA-AD to list of BXD_GROUP_EXCEPTIONS (so the correct options show ↵ | zsloan | |
| up in correlation drop-down) | |||
| 2023-01-12 | Revert "bug: use stderr in case of job errors" | Frederick Muriuki Muriithi | |
| This reverts commit 4666392bbc34e693f21895ccb62abb816ff95874. | |||
| 2023-01-12 | mechanical-rob: use new file(s) for correlation correctness | Frederick Muriuki Muriithi | |
| * test/requests/correlation_results_text_files/BXD_10710_vs_BXDPublish.csv new sample file for testing. * test/requests/correlation_tests.py: update test code to use new sample files * wqflask/wqflask/correlation/show_corr_results.py: Fix minor issues exposed by tests. | |||
| 2023-01-12 | bug: use stderr in case of job errors | Frederick Muriuki Muriithi | |
| 2023-01-12 | mechanical-rob: deactivate correctness tests for now. | Frederick Muriuki Muriithi | |
| 2023-01-09 | Add Show/Hide Columns to collections/view | zsloan | |
| 2023-01-09 | Add back option to search on trait page table | zsloan | |
| This was mistakenly removed when the table code was refactored a while back | |||
| 2023-01-05 | Turn on homology track by default | zsloan | |
| 2023-01-04 | auth: Add `/user-profile` endpoint | Frederick Muriuki Muriithi | |
| Display some details for the currently logged in user at the `/user-profile` endpoint. | |||
| 2022-12-29 | auth: Redirect on login and cleanup | Frederick Muriuki Muriithi | |
| * wqflask/wqflask/oauth2/routes.py: remove unused imports. Add placeholder endpoint "/register-client" * wqflask/wqflask/templates/oauth2/login.html: enable redirect to specific endpoints | |||
| 2022-12-29 | auth: Provide decorator to limit access to routes | Frederick Muriuki Muriithi | |
| Define the new `oauth2_required` decorator that checks for the existence and validity of a token before allowing access to the given endpoint. Move the `user_logged_in` check to the `checks.py` module. * wqflask/wqflask/oauth2/checks.py: new file * wqflask/wqflask/oauth2/routes.py: import new decorator | |||
| 2022-12-29 | Implement "login" via OAuth2 | Frederick Muriuki Muriithi | |
| 2022-12-29 | README: Update invocation command for pytest | Frederick Muriuki Muriithi | |
| Invoke pytest via python so as to ensure that all the relevant modules are found when running tests. | |||
| 2022-12-23 | Remove try/except around mapping, because it makes it hard to see proper ↵ | zsloan | |
| error logs | |||
| 2022-12-23 | No tracking: remove revolvermaps | Pjotr Prins | |
| 2022-12-21 | Remove unnecessary if statement from drawHomologyBand | zsloan | |
| 2022-12-21 | Fix logic for filtering homology data | zsloan | |
| 2022-12-21 | Make homology track display directional arrows based on query strand | zsloan | |
| 2022-12-21 | Fix homology source file path | zsloan | |
| Fix syntax error in multiline if statement | |||
| 2022-12-21 | Replace a couple other instances of hg38 with query | zsloan | |
| 2022-12-21 | Substitute mm10/hg38 with ref/source in display_mapping_results.py | zsloan | |
| 2022-12-21 | Change homology logic to include lines that start/end outside of the | zsloan | |
| given mb range This is to avoid a situation where a user zooms in and a bar should encompass the whole area but isn't displayed (because its start/end don't both fall within the given Mb range) This commit also renames mm10/hg38 to ref/query to be more generic | |||
| 2022-12-21 | Replace hard-coded homology source file | zsloan | |
| Remove limitation on when to show homology track | |||
| 2022-12-21 | Add code drawing homology band in mapping figure | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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