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2016-02-24GEMMA mostly working with gn1 mapping, though there may be some issue with ↵zsloan
the y scale
2016-02-18Edited gen_select_dataset to remove confidential datasetszsloan
Also hard-coded the removal of Macaque Monkey since I couldn't think of a good way to retroactively check if every dataset in a species is confidential
2016-02-15Fixed R/qtl mapping so the group (BXD, etc) isn't hardcodedzsloan
Removed an extraneous </td> tag from the show trait page
2016-02-11Updated jquery validation plugin, now works in IEzsloan
Fixed a couple minor html syntax erors in login_user.html and base.html Changed export button on correlation page to csvHtml5, but still has problem with commas in fields being interpreted as a new column
2016-02-08Fixed the logic if how the correlation page applies filters (mean ↵zsloan
expression, location, etc) Added back some colorbox directories that we apparently need (I had removed them in an earlier commit)
2016-02-08Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
Conflicts: .gitignore
2016-02-08Guix: installation notespjotrp
2016-02-08Renamed misc dir to docpjotrp
2016-02-08Removing LFSpjotrp
2016-02-08gitignore: resolved conflictpjotrp
2016-02-08Merge branch 'master' of github.com:genenetwork/genenetwork2 into gn-masterpjotrp
2016-02-04Most importantly, this commit fixes an issue that caused the trait page to ↵zsloan
not work because of the new dataset_menu_structure.json file An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working
2016-01-29Info button should now work for phenotype and genotype datasetszsloan
2016-01-27Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-01-27Added info button to Dataset dropdown on index pagezsloan
Fixed script that generates dataset dropdown json file to include accession id Fixed dataset link on search results page
2016-01-26Removed a bunch of files/directories/packages that are no longer used and ↵zsloan
some corresponding imports
2016-01-21MANIFEST: Ignore output datapjotrp
2016-01-21Adding html+js+css+img files into MANIFESTpjotrp
2016-01-19Adding Python setup.py supportpjotrp
2016-01-15Cofactor now works with reaperzsloan
2016-01-14Regular and single chr views work for qtl reaper nowzsloan
Single chr now works for R/qtl (didn't before) Merged qtl reaper code into marker_regression.py
2016-01-12Mapping works for rqtl and centimorgan scalezsloan
2016-01-06Single chromosome view now works for mapping page using GN1's image codezsloan
Removed loading bar that appeared on show trait page since it didn't work with GN1 mapping (which opens in a new page)
2016-01-04Added headers/foots/css to mapping pagezsloan
Mapping results table now works
2015-12-18Mapping results open in new window; still need to add header/footer/jszsloan
2015-12-18Added image map for figurezsloan
2015-12-15Added the js_data so both the GN1 and GN2 figures can be displayedzsloan
2015-12-14GN1 mapping full genome figure now correct for pylmm and output to web pagezsloan
2015-12-12Changed loop drawing qtl curve to fix some issues; still need to make it ↵zsloan
draw to different chr areas though
2015-12-09Disabled GN1 mapping for master branch; mistakenly pushed with it enabled beforezsloan
2015-12-09Fixed search result page text to make sense for all working search termszsloan
Added a bunch of print statements to GN1 mapping code to locate where code stalls
2015-12-04Commented out code related to additive/dominance effect in gn1 marker ↵zsloan
regression code; gn1 code now runs without errors but still need to give output to template
2015-11-18Fixed issue where literature and tissue correlation didn't workzsloan
Scatterplot matrix feature only appears if user is logged in now Committing current progress on mapping page (it can at least import the file now, but there are still errors)
2015-11-18Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloanpjotrp
2015-11-09Fixed issue that caused mapping to not work; for some reason the path to ↵zsloan
pylmm was wrong
2015-11-05Fixed issue where misplaced html comment end hid all phenotype table resultszsloan
2015-10-23Fixed error if you click search after entering white spaces; Ethan's fix ↵zsloan
only worked when the user hits enter
2015-10-23Merge pull request #128 from sn3twork/issues/126zsloan
Fixes issue #126.
2015-10-23Merge pull request #125 from sn3twork/issues/98zsloan
Fixes issue #98.
2015-10-22Fixes issue #126. Fixed broken references to dbdoc folder. They now allEthan Willis
point to static/dbdoc. Added static/dbdoc folder.
2015-10-22Fixes issue #98. Doesn't submit search request if the search requestEthan Willis
contains *only* whitespace.
2015-10-22Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-10-22Added factor loadings table and plot (though need to finish improving plot ↵zsloan
still) Fixed issue where cM locations for R/qtl were displayed as Mb and had used Mb Chr lenghts for the scale
2015-10-20Merge pull request #124 from sn3twork/enhancement/ui/wgcna_setupzsloan
Updated wgcna_setup to use Bootstrap error messages and form styling.
2015-10-20Merge pull request #121 from sn3twork/masterzsloan
Fixes bug #98. Enhancement
2015-10-20Updated wgcna_setup to use Bootstrap error messages and form styling.Ethan Willis
2015-10-19Enhancement of fix for bug #98. Refuses submission of search form ifEthan Willis
search terms are empty. This avoids an internal server error.
2015-10-12Changed the location filter for correlation pagezsloan
2015-10-12Fixed an error page that occurs if traits with no overlapping samples are ↵zsloan
used for correlation matrix
2015-10-09Merge branch 'master' of github.com:zsloan/genenetwork2zsloan
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