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2015-05-12Merge https://github.com/genenetwork/genenetwork2Lei Yan
2015-05-12Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-05-12Merge branch 'master' of github.com:genenetwork/genenetwork2pjotrp
2015-05-12Added pylmm instructionpjotrp
2015-05-12Fix #35Artem Tarasov
* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top
2015-05-11Show PYLMM_PATH on errorPjotr Prins
2015-05-11Moved chunksPjotr Prins
2015-05-11More pylmm dependencies disabledpjotrp
2015-05-11Remove outdated codepjotrp
2015-05-11Moving pylmm out of the treepjotrp
2015-05-11pylmm has moved out of the GN2 source tree to ↵pjotrp
https://github.com/genenetwork/pylmm_gn2
2015-05-11Merge branch 'master' of https://github.com/zsloan/genenetwork2pjotrp
2015-05-08updating histogram on values' change (#28)Artem Tarasov
2015-05-08fix histogram bin widthArtem Tarasov
It was calculated wrongly when bins began from a non-zero value
2015-05-08fixArtem Tarasov
2015-05-08Fix #29Artem Tarasov
The number of bins was set to 20 for all datasets. Changed the number to be sqrt(#samples) as suggested on Wikipedia.
2015-05-08Merge branch 'master' of https://github.com/zsloan/genenetwork2Artem Tarasov
2015-05-07Merge pull request #22 from lomereiter/fix_trait_data_exportzsloan
Fix trait data export (#21)
2015-05-07Excel export of trait dataArtem Tarasov
2015-05-07Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-05-07fix CSV export of trait dataArtem Tarasov
2015-05-07allow for attribute table to not existArtem Tarasov
2015-05-06Merge pull request #18 from lomereiter/login_form_validationzsloan
email and pass validation
2015-05-06email and pass validationArtem Tarasov
2015-05-01Commented out imports of a few files that aren't used yet or stored in gitzsloan
2015-05-01Added Pjotr's latest pylmm changeszsloan
Added GEMMA and necessary plink-format genotype files in gemma directory Added the GEMMA genotype files to git LFS Removed some unnecessary/duplicated code from interval_mapping.py Separated GEMMA mapping code into its own file (will also do this for other methods) and fixed and issue that caused it to not run Added the table to the pair scan results page and wrote some code adding its attributes to each marker object, but it still isn't working yet
2015-04-19Pick up PYLMM_PATH from environment or setting.pyPjotr Prins
2015-04-19Pick up PYLMM_PATH from environment or setting.pyPjotr Prins
2015-04-19pylmm: ReleasePjotr Prins
2015-04-19pylmm: can now be called from GN2 without path setPjotr Prins
2015-04-19pylmm: auto add to pythonpathPjotr Prins
2015-04-19pylmm: move temp_data localPjotr Prins
2015-04-19pylmm: module loadingPjotr Prins
2015-04-19pylmm: Copied benchmark (preparing for a module)Pjotr Prins
2015-04-19Output configiPjotr Prins
2015-04-19runserver: set portPjotr Prins
2015-04-19INSTALL: refer to information in ./miscPjotr Prins
2015-04-19Restore logger in runserverPjotr Prins
2015-04-19pylmm: Edit conflictPjotr Prins
2015-04-19INSTALL infoPjotr Prins
2015-04-18Show first 40 LOD scoresPjotr Prins
2015-04-18Disable some print statements - will introduce debug levels soonPjotr Prins
2015-04-18Fix NA to float tranformsPjotr Prins
2015-04-18pylmm: fix integration problemsPjotr Prins
2015-04-18pylmm: fix integration problemsPjotr Prins
2015-04-18Use reduced outputter for GN2 logs tooPjotr Prins
2015-04-17Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmmPjotr Prins
2015-04-17spacingPjotr Prins
2015-04-17INSTALLPjotr Prins
2015-04-17Merge branch 'master' into lmmPjotr Prins
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