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2021-10-08Fixed some issues with scale and score_type in mapping export + include mappi...zsloan
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by Scroller...zsloan
2021-10-08Fixed the sort to account for both chr and pos in a kind of hack-y way + adde...zsloan
2021-10-08Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it si...zsloan
2021-10-06scripts: resource: Add option for specifying a groups uuidBonfaceKilz
2021-10-06scripts: group: Replace args.group_name with data["field"]BonfaceKilz
2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
2021-10-06workflows: main.yml: Disable link checkingBonfaceKilz
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into clustered_...Frederick Muriuki Muriithi
2021-10-06scripts: group: Remove empty `""` value for data.get...data.get("field") will default to None if there is no value; and None is falsy. BonfaceKilz
2021-10-06scripts: group: Remove unused importBonfaceKilz
2021-10-06scripts: group: Use a unique key to identify a groupBonfaceKilz
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientation...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced. Frederick Muriuki Muriithi
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing calls...After adding the missing attribute to "self.trait", we need to also need to update some missing calls. BonfaceKilz
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need to...zsloan
2021-10-04Changed the group.py script to replace user e-mails with IDs and to include i...zsloan
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ...zsloan
2021-10-04Add group link for user member groupszsloan
2021-10-04scripts: group.py: Modify exit message when displaying updated dataBonfaceKilz
2021-10-04scripts: group.py: Remove "glom" dependencyBonfaceKilz
2021-10-04Decode redis response by defaultBonfaceKilz
2021-10-04Modify resource editing script to enable data backups & restorationBonfaceKilz
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Add script that adds "editors" group to all resources in RedisBonfaceKilz
2021-10-04Add script for creating/ updating groups during authorisationBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queries...* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user. BonfaceKilz
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-10-01add xterm web terminalAlexander Kabui
2021-09-29test template for gn3 wgcnaAlexander Kabui
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codes...The stack trace causes the log file to grow into unmanageable sizes over time. BonfaceKilz
2021-09-25Add progress indicator. Handle errors....Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add a progress indicator to show the user that there is some progress happening, so that they can wait. Add a function to handle any errors that arise. Frederick Muriuki Muriithi
2021-09-25Remove hard-coded URL; use configured URL...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * etc/default_settings.py: remove duplicate configuration variable * wqflask/wqflask/collect.py: use the configured url for the API server Use the configured URL rather that the hard-coded URL that was used for testing out the clustered heatmap generation. Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.46.2) at 2024-12-05 02:44:59 +0000