| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-03-29 | Can now add markers to collection from mapping results page | zsloan | |
| 2018-03-29 | Resolved conflict in views.py | zsloan | |
| 2018-03-29 | Fixed box plots and got them to update with changed sample data | zsloan | |
| Removed fast correlation option because it doesn't work well with gunicorn Changed the type of logger from error to debug when logging which page is being visited in views.py | |||
| 2018-03-29 | Merge pull request #297 from pjotrp/testing | zsloan | |
| Testing | |||
| 2018-03-29 | Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295 | Pjotr Prins | |
| 2018-03-29 | Type checking in its own file | Pjotr Prins | |
| 2018-03-29 | Search: improved regex and some debug info | Pjotr Prins | |
| 2018-03-29 | Disable caching of search errors | Pjotr Prins | |
| 2018-03-29 | Checking search error terms with regex | Pjotr Prins | |
| 2018-03-29 | Illegal search term corrected treatment and no longer shows as error in logs | Pjotr Prins | |
| 2018-03-26 | Remove flask_security module - not used | Pjotr Prins | |
| 2018-03-26 | Fix conflict | Pjotr Prins | |
| 2018-03-26 | Use logger.info instead of logger.debug, fixes ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/296 | |||
| 2018-03-26 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins | |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins | |
| 2018-03-26 | Fix | Pjotr Prins | |
| 2018-03-26 | Authentication: some mods around defaults | Pjotr Prins | |
| 2018-03-26 | RELEASENOTES | Pjotr Prins | |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
| 2018-03-26 | Initialise mapping tests | Muriithi Frederick Muriuki | |
| * Add mapping tests, and build the first of the tests. | |||
| 2018-03-26 | Move import to the top of the page. | Muriithi Frederick Muriuki | |
| * Mainly to tell the dependencies easily. | |||
| 2018-03-26 | Check that key exists before using it | Muriithi Frederick Muriuki | |
| * Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value. | |||
| 2018-03-26 | Add tests for main web functionality | Muriithi Frederick Muriuki | |
| 2018-03-26 | Add tests to check links. | Muriithi Frederick Muriuki | |
| 2018-03-26 | Add link_checker module | Muriithi Frederick Muriuki | |
| * Add the module that will hold the code to test the links on the system. | |||
| 2018-03-26 | Use argparse to handle arguments | Muriithi Frederick Muriuki | |
| * Use argparse to handle commandline arguments. * Create initial layout of how the code might end up - lots of the code is currently commented out. | |||
| 2018-03-26 | Add tests to check that the UI is setup correctly | Muriithi Frederick Muriuki | |
| * Check that the links for OAuth2 logins via ORCID and GitHub are setup correctly. | |||
| 2018-03-26 | Provide connections to elasticsearch | Muriithi Frederick Muriuki | |
| * Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests. | |||
| 2018-03-26 | Add new tests for orcid logins | Muriithi Frederick Muriuki | |
| 2018-03-26 | Add new test for github logins | Muriithi Frederick Muriuki | |
| 2018-03-26 | Remove failing code | Muriithi Frederick Muriuki | |
| * With the parameterized module, the testcase cannot be run independently at this time. | |||
| 2018-03-26 | Simplify test. Check for content, rather than url | Muriithi Frederick Muriuki | |
| * The test functions were very similar, so this commit refactors out the common test code to a single method, and passes in the data to the test using the parameterized package. * Check that the page content after a login attempt is the expected content, rather than checking the url. | |||
| 2018-03-26 | Fix assumption of existing collection | Muriithi Frederick Muriuki | |
| * When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. | |||
| 2018-03-26 | Add more login tests. | Muriithi Frederick Muriuki | |
| 2018-03-26 | Add a runner for all integration tests. | Muriithi Frederick Muriuki | |
| 2018-03-26 | Add test for local login | Muriithi Frederick Muriuki | |
| * Add an integration test to test that the login process for users registered locally to genenetwork2 works as expected. | |||
| 2018-03-26 | Create parametrized superclass for tests | Muriithi Frederick Muriuki | |
| * Since the tests require that some parameters be provided while running the tests, create a class that helps abstract away the details of retrieving and setting the expected parameters. | |||
| 2018-03-26 | Rename file and move common code | Muriithi Frederick Muriuki | |
| * Rename the file to make it an importable module * Refactor the test to move common code out to a super class. | |||
| 2018-03-26 | Add registration test | Muriithi Frederick Muriuki | |
| * Add integration test to check the registration process. | |||
| 2018-03-26 | Requests added | Pjotr Prins | |
| 2018-03-26 | Added unittest example | Pjotr Prins | |
| 2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no ↵ | Pjotr Prins | |
| PYTHONPATH needed as it is now in the Guix build. | |||
| 2018-03-26 | Add tests for Registration process. | Muriithi Frederick Muriuki | |
| 2018-03-26 | Update module to make it more testable | Muriithi Frederick Muriuki | |
| * Update functions to make them more testable. * Update code using updated functions. | |||
| 2018-03-26 | Check elasticsearch at point of use | Muriithi Frederick Muriuki | |
| * Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down. | |||
| 2018-03-26 | Add check for elasticsearch | Muriithi Frederick Muriuki | |
| * Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user. | |||
| 2018-03-26 | Add code to allow user to change password | Muriithi Frederick Muriuki | |
| * After the email is sent to the user, there is need to provide a way for the user to actually change their password, and have the results saved. | |||
| 2018-03-26 | Refactor common items to more generic methods. | Muriithi Frederick Muriuki | |
| * Refactor code that can be used in more than one place to a more generic method/function that's called by other methods | |||
| 2018-03-26 | Send emails for forgotten passwords | Muriithi Frederick Muriuki | |
| * Update the code so that it sends out emails for the "forgot password" feature. | |||
| 2018-03-26 | Add SMTP configuration variables | Muriithi Frederick Muriuki | |
| * Add configuration variables to enable the system connect to the configured SMTP server to send out emails. | |||
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| GeneNetwork (2nd generation) |
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