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2021-10-14Merge pull request #605 from genenetwork/clustered_heatmaps...Clustered heatmapsBonfaceKilz
2021-10-14Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcna...test template for gn3 wgcnaBonfaceKilz
2021-10-13Fix issue where score_type being set wrong caused an error when exporting map...zsloan
2021-10-13Add some documentation for generating heatmaps...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user. Frederick Muriuki Muriithi
2021-10-13Update the action button text...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers. Frederick Muriuki Muriithi
2021-10-13resolve merge conflictAlexander Kabui
2021-10-13disable heatmap imageAlexander Kabui
2021-10-12Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into clustered_...Frederick Muriuki Muriithi
2021-10-10replace form input with select optionsAlexander Kabui
2021-10-10remove commented code and debug statementsAlexander Kabui
2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include mappi...zsloan
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by Scroller...zsloan
2021-10-08Fixed the sort to account for both chr and pos in a kind of hack-y way + adde...zsloan
2021-10-08Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it si...zsloan
2021-10-06scripts: resource: Add option for specifying a groups uuidBonfaceKilz
2021-10-06scripts: group: Replace args.group_name with data["field"]BonfaceKilz
2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
2021-10-06workflows: main.yml: Disable link checkingBonfaceKilz
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into clustered_...Frederick Muriuki Muriithi
2021-10-06scripts: group: Remove empty `""` value for data.get...data.get("field") will default to None if there is no value; and None is falsy. BonfaceKilz
2021-10-06scripts: group: Remove unused importBonfaceKilz
2021-10-06scripts: group: Use a unique key to identify a groupBonfaceKilz
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientation...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced. Frederick Muriuki Muriithi
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing calls...After adding the missing attribute to "self.trait", we need to also need to update some missing calls. BonfaceKilz
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05code format for wgcna results fileAlexander Kabui
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