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2022-08-11Fix correlation tests: Fix the test message.Frederick Muriuki Muriithi
2022-08-11Check for keys before using them.Frederick Muriuki Muriithi
2022-08-11Update format to prevent tissue correlation from failing...Update the data format of returned values so that it conforms with expectatitions. Frederick Muriuki Muriithi
2022-08-10Check that the correlations work as expected.Frederick Muriuki Muriithi
2022-08-10Fix formatting for legibilityFrederick Muriuki Muriithi
2022-08-10code to merge results;minor fixesAlexander_Kabui
2022-08-10compute top n tissue resultsAlexander_Kabui
2022-08-10add code to compute top n tissue resultsAlexander_Kabui
2022-08-09Fix minor bug.Frederick Muriuki Muriithi
2022-08-09Integrate rust correlations. Deduplicate similar code....- Use rust correlations rather than the slower python one - Remove code duplicated in the `wqflask/wqflask/correlation/rust_correlation.py` module within the `compute_correlation_rust` function. Frederick Muriuki Muriithi
2022-08-09Display the probeset name in the editing form...* wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to the h1 tag. Munyoki Kilyungi
2022-08-09Make edit_probeset.html similar to corresponding phenotype page...* wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button. Make button green. Move form element into the "container" div. Add "container" class to form. Left justify labels, and the button. Remove ":" from labels. Munyoki Kilyungi
2022-08-09Delete "diff" section...For both the edit phenotype and probeset pages, the diffs can be viewed from history.html. * wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs" section. * wqflask/wqflask/templates/edit_probeset.html: Ditto. Munyoki Kilyungi
2022-08-09Remove "diff" logic from edit_probeset...* wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for fetching diff. Move that... (show_history): ... here * wqflask/wqflask/templates/edit_probeset.html: Update template to show diffs in a history.html. Reposition and rename the h1 tag of this page. Munyoki Kilyungi
2022-08-09Update h1 title of history page...ATM, we don't show the name of the phenotype whose history we are changing. That may be updated in a future commit. * wqflask/wqflask/templates/edit_history.html: Reword h1 and remove "{{}}" which results in a jinja error. Munyoki Kilyungi
2022-08-09Fix circular import issueFrederick Muriuki Muriithi
2022-08-09Integrate rust correlation for "sample" correlation selection...Integrate the use of the rust code to compute the correlations for the "sample" correlation selection. Frederick Muriuki Muriithi
2022-08-09Pass trait values (X) as list not string...The trait values (X values) are converted to JSON within the `run_correlation` call. Since JSON has the ability to represent lists of objects, there is no point for the added conversion to and from strings. Frederick Muriuki Muriithi
2022-08-08remove unnessary append to listAlexander_Kabui
2022-08-08remove test;test is redundantAlexander_Kabui
2022-08-08tests refactoringAlexander_Kabui
2022-08-05Include partial_correlations.js in the search page templatezsloan
2022-08-01Remove console logs from scatterplot.jszsloan
2022-08-01Change Make Default button to Save Settingszsloan
2022-08-01Add date/time to trait page exportzsloan
2022-08-01Add header/description to partial correlation pagezsloan
2022-08-01Add index column and phenotype group code to trait exportzsloan
2022-07-28Use external process to compute sample correlationsFrederick Muriuki Muriithi
2022-07-27Disable PCA when fewer than 3 traitszsloan
2022-07-27Change some text/formatting on Correlation Matrix pagezsloan
2022-07-27Change capitalization on index pagezsloan
2022-07-27Change some text/formatting for the Scree Plotzsloan
2022-07-27Change search result text/formattingzsloan
2022-07-27Change formatting for search term + add line break in description textzsloan
2022-07-25new file module for preprocessing inputAlexander_Kabui
2022-07-25add test routeAlexander_Kabui
2022-07-25enable test routeAlexander_Kabui
2022-07-25Fix BNW linkzsloan
2022-07-25Remove Comparison Bar Chart buttonzsloan
2022-07-25Change Interval Analyst genome browser link to use mm10 instead of mm9zsloan
2022-07-25Return config in app.config or None...Update the code to return the setting already set up in the app.config dictionary if it exists or None if it does not exist. Frederick Muriuki Muriithi
2022-07-14Remove column toggle JS from show_trait.html since it's in initialize_show_tr...zsloan
2022-07-14Call DataTable() on the table id instead of referring to the_table; not...sure why this is necessary, but the search doesn't work otherwise zsloan
2022-07-12Include genotypes for F1s/reference/non-reference strains when fetching...sample data for genotype traits zsloan
2022-07-11Increase min-width for div containing tool buttons on search pagezsloan
2022-07-08Add python for exporting case attributeszsloan
2022-07-08Add JS for exporting case attributes (sample metadata)zsloan
2022-07-04wqflask: Remove DebugToolbarExtension...This functionality, at least how we use it, is already provided natively in python's pdb. Should someone need this, they can add it manually. * wqflask/runserver.py (app_config): Remove "flask_debugtoolbar" import and instantiation. * wqflask/utility/startup_config.py (app_config): Ditto. BonfaceKilz
2022-07-04wqflask: use the raw user string if value is non-existent in redis...* wqflask/wqflask/metadata_edits.py (_get_diffs): If a user---whose value is extracted from Redis and encoded in the file name---doesn't exist in Redis, use the raw string extracted from the file. BonfaceKilz
2022-07-04wqflask: Use a map over a tuple when fetching case-attributes...* wqflask/wqflask/metadata_edits.py (update_phenotype): Replace old "get_case_attributes" function call which returned a dict with the new updated version that returns a tuple. BonfaceKilz