Age | Commit message (Expand) | Author |
---|---|---|
2022-08-11 | Fix correlation tests: Fix the test message. | Frederick Muriuki Muriithi |
2022-08-11 | Check for keys before using them. | Frederick Muriuki Muriithi |
2022-08-11 | Update format to prevent tissue correlation from failing...Update the data format of returned values so that it conforms with expectatitions. | Frederick Muriuki Muriithi |
2022-08-10 | Check that the correlations work as expected. | Frederick Muriuki Muriithi |
2022-08-10 | Fix formatting for legibility | Frederick Muriuki Muriithi |
2022-08-10 | code to merge results;minor fixes | Alexander_Kabui |
2022-08-10 | compute top n tissue results | Alexander_Kabui |
2022-08-10 | add code to compute top n tissue results | Alexander_Kabui |
2022-08-09 | Fix minor bug. | Frederick Muriuki Muriithi |
2022-08-09 | Integrate rust correlations. Deduplicate similar code....- Use rust correlations rather than the slower python one - Remove code duplicated in the `wqflask/wqflask/correlation/rust_correlation.py` module within the `compute_correlation_rust` function. | Frederick Muriuki Muriithi |
2022-08-09 | Display the probeset name in the editing form...* wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to the h1 tag. | Munyoki Kilyungi |
2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page...* wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button. Make button green. Move form element into the "container" div. Add "container" class to form. Left justify labels, and the button. Remove ":" from labels. | Munyoki Kilyungi |
2022-08-09 | Delete "diff" section...For both the edit phenotype and probeset pages, the diffs can be viewed from history.html. * wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs" section. * wqflask/wqflask/templates/edit_probeset.html: Ditto. | Munyoki Kilyungi |
2022-08-09 | Remove "diff" logic from edit_probeset...* wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for fetching diff. Move that... (show_history): ... here * wqflask/wqflask/templates/edit_probeset.html: Update template to show diffs in a history.html. Reposition and rename the h1 tag of this page. | Munyoki Kilyungi |
2022-08-09 | Update h1 title of history page...ATM, we don't show the name of the phenotype whose history we are changing. That may be updated in a future commit. * wqflask/wqflask/templates/edit_history.html: Reword h1 and remove "{{}}" which results in a jinja error. | Munyoki Kilyungi |
2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi |
2022-08-09 | Integrate rust correlation for "sample" correlation selection...Integrate the use of the rust code to compute the correlations for the "sample" correlation selection. | Frederick Muriuki Muriithi |
2022-08-09 | Pass trait values (X) as list not string...The trait values (X values) are converted to JSON within the `run_correlation` call. Since JSON has the ability to represent lists of objects, there is no point for the added conversion to and from strings. | Frederick Muriuki Muriithi |
2022-08-08 | remove unnessary append to list | Alexander_Kabui |
2022-08-08 | remove test;test is redundant | Alexander_Kabui |
2022-08-08 | tests refactoring | Alexander_Kabui |
2022-08-05 | Include partial_correlations.js in the search page template | zsloan |
2022-08-01 | Remove console logs from scatterplot.js | zsloan |
2022-08-01 | Change Make Default button to Save Settings | zsloan |
2022-08-01 | Add date/time to trait page export | zsloan |
2022-08-01 | Add header/description to partial correlation page | zsloan |
2022-08-01 | Add index column and phenotype group code to trait export | zsloan |
2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi |
2022-07-27 | Disable PCA when fewer than 3 traits | zsloan |
2022-07-27 | Change some text/formatting on Correlation Matrix page | zsloan |
2022-07-27 | Change capitalization on index page | zsloan |
2022-07-27 | Change some text/formatting for the Scree Plot | zsloan |
2022-07-27 | Change search result text/formatting | zsloan |
2022-07-27 | Change formatting for search term + add line break in description text | zsloan |
2022-07-25 | new file module for preprocessing input | Alexander_Kabui |
2022-07-25 | add test route | Alexander_Kabui |
2022-07-25 | enable test route | Alexander_Kabui |
2022-07-25 | Fix BNW link | zsloan |
2022-07-25 | Remove Comparison Bar Chart button | zsloan |
2022-07-25 | Change Interval Analyst genome browser link to use mm10 instead of mm9 | zsloan |
2022-07-25 | Return config in app.config or None...Update the code to return the setting already set up in the app.config dictionary if it exists or None if it does not exist. | Frederick Muriuki Muriithi |
2022-07-14 | Remove column toggle JS from show_trait.html since it's in initialize_show_tr... | zsloan |
2022-07-14 | Call DataTable() on the table id instead of referring to the_table; not...sure why this is necessary, but the search doesn't work otherwise | zsloan |
2022-07-12 | Include genotypes for F1s/reference/non-reference strains when fetching...sample data for genotype traits | zsloan |
2022-07-11 | Increase min-width for div containing tool buttons on search page | zsloan |
2022-07-08 | Add python for exporting case attributes | zsloan |
2022-07-08 | Add JS for exporting case attributes (sample metadata) | zsloan |
2022-07-04 | wqflask: Remove DebugToolbarExtension...This functionality, at least how we use it, is already provided natively in python's pdb. Should someone need this, they can add it manually. * wqflask/runserver.py (app_config): Remove "flask_debugtoolbar" import and instantiation. * wqflask/utility/startup_config.py (app_config): Ditto. | BonfaceKilz |
2022-07-04 | wqflask: use the raw user string if value is non-existent in redis...* wqflask/wqflask/metadata_edits.py (_get_diffs): If a user---whose value is extracted from Redis and encoded in the file name---doesn't exist in Redis, use the raw string extracted from the file. | BonfaceKilz |
2022-07-04 | wqflask: Use a map over a tuple when fetching case-attributes...* wqflask/wqflask/metadata_edits.py (update_phenotype): Replace old "get_case_attributes" function call which returned a dict with the new updated version that returns a tuple. | BonfaceKilz |