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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
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stable
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GeneNetwork (2nd generation)
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Author
2016-01-19
Adding Python setup.py support
pjotrp
2016-01-15
Cofactor now works with reaper
zsloan
2016-01-14
Regular and single chr views work for qtl reaper now
...
Single chr now works for R/qtl (didn't before) Merged qtl reaper code into marker_regression.py
zsloan
2016-01-12
Mapping works for rqtl and centimorgan scale
zsloan
2016-01-06
Single chromosome view now works for mapping page using GN1's image code
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Removed loading bar that appeared on show trait page since it didn't work with GN1 mapping (which opens in a new page)
zsloan
2016-01-04
Added headers/foots/css to mapping page
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Mapping results table now works
zsloan
2015-12-18
Mapping results open in new window; still need to add header/footer/js
zsloan
2015-12-18
Added image map for figure
zsloan
2015-12-15
Added the js_data so both the GN1 and GN2 figures can be displayed
zsloan
2015-12-14
GN1 mapping full genome figure now correct for pylmm and output to web page
zsloan
2015-12-12
Changed loop drawing qtl curve to fix some issues; still need to make it draw...
zsloan
2015-12-09
Disabled GN1 mapping for master branch; mistakenly pushed with it enabled before
zsloan
2015-12-09
Fixed search result page text to make sense for all working search terms
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Added a bunch of print statements to GN1 mapping code to locate where code stalls
zsloan
2015-12-04
Commented out code related to additive/dominance effect in gn1 marker regress...
zsloan
2015-11-18
Fixed issue where literature and tissue correlation didn't work
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Scatterplot matrix feature only appears if user is logged in now Committing current progress on mapping page (it can at least import the file now, but there are still errors)
zsloan
2015-11-18
Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloan
pjotrp
2015-11-09
Fixed issue that caused mapping to not work; for some reason the path to pylm...
zsloan
2015-11-05
Fixed issue where misplaced html comment end hid all phenotype table results
zsloan
2015-10-23
Fixed error if you click search after entering white spaces; Ethan's fix only...
zsloan
2015-10-23
Merge pull request #128 from sn3twork/issues/126
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Fixes issue #126.
zsloan
2015-10-23
Merge pull request #125 from sn3twork/issues/98
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Fixes issue #98.
zsloan
2015-10-22
Fixes issue #126. Fixed broken references to dbdoc folder. They now all
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point to static/dbdoc. Added static/dbdoc folder.
Ethan Willis
2015-10-22
Fixes issue #98. Doesn't submit search request if the search request
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contains *only* whitespace.
Ethan Willis
2015-10-22
Merge branch 'master' of github.com:genenetwork/genenetwork2
zsloan
2015-10-22
Added factor loadings table and plot (though need to finish improving plot st...
...
Fixed issue where cM locations for R/qtl were displayed as Mb and had used Mb Chr lenghts for the scale
zsloan
2015-10-20
Merge pull request #124 from sn3twork/enhancement/ui/wgcna_setup
...
Updated wgcna_setup to use Bootstrap error messages and form styling.
zsloan
2015-10-20
Merge pull request #121 from sn3twork/master
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Fixes bug #98. Enhancement
zsloan
2015-10-20
Updated wgcna_setup to use Bootstrap error messages and form styling.
Ethan Willis
2015-10-19
Enhancement of fix for bug #98. Refuses submission of search form if
...
search terms are empty. This avoids an internal server error.
Ethan Willis
2015-10-12
Changed the location filter for correlation page
zsloan
2015-10-12
Fixed an error page that occurs if traits with no overlapping samples are use...
zsloan
2015-10-09
Merge branch 'master' of github.com:zsloan/genenetwork2
zsloan
2015-10-09
Fixed correlations for phenotype datasets
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Fixed table for some expression dataset searches Added collection button to correlation page Added color gradient to correlation matrix
zsloan
2015-10-08
Committer: Lei Yan <lei@penguin.uthsc.edu>
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On branch master
Lei Yan
2015-10-08
Merge pull request #120 from DannyArends/WGCNAintegration
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WGCNA integration
Lei Yan
2015-10-08
Using the correct NA from Rpy2
DannyArends
2015-10-08
Minor, adding a better check for NA
DannyArends
2015-10-08
Adding more comments
DannyArends
2015-10-08
Merge branch 'master' of github.com:genenetwork/genenetwork2 into WGCNAintegr...
DannyArends
2015-10-08
User inputs are now passed to the algorithm, and power is tested, and autosel...
DannyArends
2015-10-08
Massive update to the templates, adding error checking and handling + the eig...
DannyArends
2015-10-07
Adding library for slider used with correlation tool
zsloan
2015-10-07
The results now show the soft thresholds table, and the gene <-> module table
DannyArends
2015-10-07
Passing more information calculated by WGCNA to the results page
DannyArends
2015-10-07
Merge branch 'master' of github.com:genenetwork/genenetwork2 into WGCNAintegr...
DannyArends
2015-10-05
Correlation Matrix page is partially complete + fixed some issues with column...
zsloan
2015-09-27
Merge branch 'master' of github.com:genenetwork/genenetwork2 into WGCNAintegr...
DannyArends
2015-09-25
Forgot to add the table-striped class to the basic stats table to make its st...
zsloan
2015-09-25
Made the basic statistics table look nicer and got rid of the foo column if o...
zsloan
2015-09-24
Location range feature should work for correlations now, though the interface...
zsloan
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