Age | Commit message (Expand) | Author |
2017-06-12 | Added explanatory text to heatmap page | zsloan |
2017-06-12 | Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMAND | Pjotr Prins |
2017-06-12 | Fixed issue where 0.0 values would be converted into X's on the trait page | zsloan |
2017-06-09 | Merge /home/staging/gene into development | zsloan |
2017-06-09 | - Changed the way the genofile is set so different genofiles can be selected ......- Now shows error page for Correlation Matrix if traits aren't all from the same group (later need to make it check for shared samples, since different groups may contain some of the same samples
- Mapping results page now displays the genofile in the information section
- Only show Interval Analyst if species is mouse or rat (previously it would show a blank table for other species)
- Network Graph now only shows links in a node's info if the relevant information (for example geneid) exists, and the label changes depending on the type of data set
- Other minor changes to the appearance of the Network Graph menu (less white space, plus clickable descriptions for a couple options)
- Improved Correlations Results page to shorten Description and Authors cell content for Phenotype traits (to keep table width manageable)
- Changed the glossary links for LRS and Additive Effect columns for Gene Global Search
- Improved appearance for Phenotype Global Search results
- Temporarily removed Mapping options/features that don't work from the trait page
| zsloan |
2017-06-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-06-02 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-06-02 | settings: GENENETWORK_FILES | Pjotr Prins |
2017-06-02 | settings: do not enforce JS paths | Pjotr Prins |
2017-05-31 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-05-31 | Added various tool options to correlation results page and improved table app......Fixed minor logic issue in trait.py
| zsloan |
2017-05-31 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-31 | JS_GUIX_PATH may not be there | Pjotr Prins |
2017-05-31 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-31 | JS module handling | Pjotr Prins |
2017-05-22 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-05-22 | Added submit trait to header menu and fixed some minor issues with Network Gr... | zsloan |
2017-05-22 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-22 | Added print lines showing url to views.py and updated dataset menu json file | zsloan |
2017-05-22 | Merge pull request #254 from pjotrp/diet-merge...Merge from the diet branch | zsloan |
2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings
- better detection of Guix
- removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS
- removing some default settings, such as PYLMM_COMMAND
- rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY
- added GUIX_JS_PATH for JS modules
* Added documentation on installing binary GN2
* Updated Twitter board to latest version in Guix - it had broken
* Updated many tools in the latest Guix profile
| Pjotr Prins |
2017-05-16 | Fixed issue that caused mapping to not work for R/qtl...Updated dataset menu dropdown info
Began adding option to download statistics figures as PNG
| zsloan |
2017-05-08 | Merge pull request #253 from lyan6/master...renamed: gn2_lei.conf -> gn2-lei.conf | zsloan |
2017-05-08 | corr_scatter_plot update (use nvd3) | Lei Yan |
2017-05-04 | renamed: gn2_lei.conf -> gn2-lei.conf | Lei Yan |
2017-05-04 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
2017-04-25 | Fixed issue with correlation result trait links if target dataset is differen......Improved collection list and view table appearances
Added question mark image for glossary entries in table headers
Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values
| zsloan |
2017-04-17 | Added option to remove collections from collection list page...Improved appearance of search result and collection tables
| zsloan |
2017-04-06 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
2017-04-05 | Added images directory with various gifs, etc | zsloan |
2017-04-05 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-04-05 | Merge pull request #251 from lyan6/master...Add meta info (X axis, Y axis) for Correlation Scatterplot | zsloan |
2017-04-05 | - Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet
- Added inner margins by increasing xDomain and yDomain of probability plot on trait page
- Increased X/Y-axis label font size
- Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading
- Improved appearance of correlation page table
- Added links to github to index page
- Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those
- Removed "Tissue" from trait page for phenotype traits
| zsloan |
2017-04-04 | Change scatterplot title font size | Lei Yan |
2017-04-04 | Change scatterplot image buffer/inner | Lei Yan |
2017-04-04 | align X and Y meta info | Lei Yan |
2017-03-30 | Change "Correlation Scatterplot" size, font, color, etc. | Lei Yan |
2017-03-16 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 | Lei Yan |
2017-03-16 | Merge /home/zas1024/gene | Lei Yan |
2017-03-16 | Add meta info (X axis, Y axis) for Correlation Scatterplot | Lei Yan |
2017-02-09 | Merge pull request #247 from zsloan/master...A couple minor commits | zsloan |
2017-02-09 | Fixed issue where I forgot to add GeneticType to the query_for_group query fo......Increased digits of some Basic Statistics values from 2 to 3
| zsloan |
2017-02-09 | Changed second column header to 'Value' when there's only one sample group | zsloan |
2017-02-09 | Merge pull request #246 from zsloan/master...Added genetic_type to DatasetGroup object to differentiate between wh… | zsloan |
2017-02-09 | Added genetic_type to DatasetGroup object to differentiate between which grou......Minor changes/improvements for trait page
Updated dataset_menu_structure.json
| zsloan |
2017-02-08 | Merge pull request #245 from zsloan/master...Changed the way .fam files are written/read, which fixes the issue wi… | zsloan |
2017-02-08 | Changed the way .fam files are written/read, which fixes the issue with GEMMA... | zsloan |
2017-02-06 | Merge pull request #242 from zsloan/master...Mapping results figure now correctly says whether GEMMA was used as m… | zsloan |
2017-02-06 | Mapping results figure now correctly says whether GEMMA was used as mapping m... | zsloan |
2017-02-06 | Merge pull request #241 from zsloan/master...Removed reference to trait_submission since it isn't used yet | zsloan |