| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-05-16 | Switching between login and register working pretty well | Sam |
| 2013-05-16 | Before trying a new modal window | Sam |
| 2013-05-10 | Sign in template looking even better | Sam |
| 2013-05-10 | Sign in template looking pretty good | Sam |
| 2013-05-10 | More security changes | Sam |
| 2013-05-10 | Have the beginnings of a user_manager working | Sam |
| 2013-05-09 | Added original security templates (so we can change them) | Sam |
| 2013-05-09 | Working on user registration | Sam |
| 2013-05-08 | Merge branch 'flask' of git://github.com/leiyan/genenetwork into flask | Zachary Sloan |
| 2013-05-08 | Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset and their sample values | Lei Yan |
| 2013-05-07 | Made some progress adding species/group tabs to the quick search result page to...make the results easier to navigate | Zachary Sloan |
| 2013-05-02 | Got quick search code running (but not displaying properly)...Code that processes subset of snps works, in process of putting into a class | Zachary Sloan |
| 2013-04-30 | Merge branch 'flask' of git://github.com/leiyan/genenetwork into flask | Zachary Sloan |
| 2013-04-30 | Changed path to log file...Added server port to configuration file | Lei Yan |
| 2013-04-30 | Did a little with correlation_plot.py | Zachary Sloan |
| 2013-04-26 | Added file that checks how much time is added to a loop's runtime by print st......Continued work on file that processes each individual chunk of the snp iterator/plink input | Zachary Sloan |
| 2013-04-24 | Began writing code that writes some objects used in LMM to redis...and writes/reads eachitem in the plink_input | Zachary Sloan |
| 2013-04-24 | Added original pylintrc | Zachary Sloan |
| 2013-04-24 | Checking in quick_search_table.py before using pylin | Zachary Sloan |
| 2013-04-24 | Fixed issue with the part of quick_search_table.py that loads phenotype traits | Zachary Sloan |
| 2013-04-23 | Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | Zachary Sloan |
| 2013-04-19 | Fixed the issue with the x-axis coordinates for marker regression plot | Zachary Sloan |
| 2013-04-18 | The plink_input is split into chunks that are stored in temp_data, but...we might decide to store it differently | Zachary Sloan |
| 2013-04-18 | LMM code now reads in gzipped pickled plink snp iterator object | Zachary Sloan |
| 2013-04-18 | input file is now loaded by pickle | Zachary Sloan |
| 2013-04-17 | Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file | Zachary Sloan |
| 2013-04-17 | Added a benchmark for running the chunks code on the list of snps | Zachary Sloan |
| 2013-04-17 | Renamed chunk_test.py to chunks.py | Zachary Sloan |
| 2013-04-17 | Updated chunk_test.py | Zachary Sloan |
| 2013-04-17 | Added chunk_test.py which compared my/ and sam's split into...chunks algorithms' accuracy/speed | Zachary Sloan |
| 2013-04-17 | Wrote code that tests the effectiveness of the function that divides a...list into a given number of chunks | Zachary Sloan |
| 2013-04-17 | Fixed small issue with the divide_into_chunks function...that caused one too many chunks to be created | Zachary Sloan |
| 2013-04-16 | Wrote functions that divide a list into a specified number of chunks...(to be used on the list of snps for the LMM code) | Zachary Sloan |
| 2013-04-16 | Checking in before making some changes | Zachary Sloan |
| 2013-04-16 | Put most of the code calculating human association statistics in...lmm.py into a separate function | Zachary Sloan |
| 2013-04-11 | Fixed a bug with quick_search_table.py...Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines | Zachary Sloan |
| 2013-04-10 | Created template for quick search page...Fixed a couple bugs with quick_search_table.py | Zachary Sloan |
| 2013-04-09 | Have quick search working for phenotypes | Zachary Sloan |
| 2013-04-09 | Nick's code works fine with human data...Added option to limit results based on lod score (which also changes the y-axis of the plot) | Zachary Sloan |
| 2013-04-05 | Loading bar now correctly shows the time to completion...and the code seems to run correctly | Zachary Sloan |
| 2013-04-05 | Made change to nginx config file that seems to have fixed the...504 gateway timeout issue with the human datasets | Zachary Sloan |
| 2013-04-05 | Got Nick's code working with the MDP datasets under the BXD group,...but with only BXD strains | Zachary Sloan |
| 2013-04-05 | Made changes to get pylmm code working with HMDP datasets | Zachary Sloan |
| 2013-04-02 | Finished adding code that uses the plink genotype data if...a human dataset and json data if any other species | Zachary Sloan |
| 2013-04-02 | Committing before splitting code that runs pylmm with plink files...and code that runs it with json | Zachary Sloan |
| 2013-04-02 | pylmm code is running for human data (plink .bed genotype files) | Zachary Sloan |
| 2013-03-28 | quick_search_table.py seems to be running OK for the PublishXRef...table, but will need to check later to make sure | Zachary Sloan |
| 2013-03-28 | quick_search_table.py now seems to run correctly for ProbeSetXRef...rows | Zachary Sloan |
| 2013-03-28 | Committing before putting quick_search_table code in classes | Zachary Sloan |
| 2013-03-27 | Got quick_search_table.py to a point where it runs; will...know tomorrow whether it ran correctly or not | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |