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2020-11-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Alexander Kabui
2020-11-26Merge pull request #491 from zsloan/feature/manhattan_plot_coloring...Feature/manhattan plot coloringzsloan
2020-11-26Changed the way the chromosome colors for the "color by chr" manhattan plot o...zsloan
2020-11-25Added actual code for coloring manhattan plot differently to display_mapping_...zsloan
2020-11-25Added code for passing around form parameters related to manhattan plot color...zsloan
2020-11-25Added form options for changing manhattan plot color scheme + added necessary...zsloan
2020-11-25Removed an unused console.timeEnd in the JSzsloan
2020-11-25Substituted CDN link to the font-awesome CSS with the local guix profile linkzsloan
2020-11-25Merge pull request #489 from Alexanderlacuna/fix-references...Fix broken UIBonfaceKilz
2020-11-24solve issues to do with decoding in python3Alexander Kabui
2020-11-23Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-23Changed correlation matrix cells for traits with zero shared samples to inste...zsloan
2020-11-21Merge pull request #488 from BonfaceKilz/feature/fetch-md-files-from-gh-docs-......Feature/fetch md files from gh docs repoBonfaceKilz
2020-11-21Use docker image with markdown packaged...* .github/workflows/main.yml (jobs): [container]: Use image that is on python3-genenetwork "ad741c1" which has python-markdown packaged. BonfaceKilz
2020-11-20Replace mockobject with dataclasses...* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto. BonfaceKilz
2020-11-20Update tests to use new gn2-docs urlBonfaceKilz
2020-11-20Replace mistunes with markdown library...* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes. BonfaceKilz
2020-11-20Point url for fetching md content to gn-docs repo...* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content. BonfaceKilz
2020-11-20Remove glossary markdown template...* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs BonfaceKilz
2020-11-19Removed lines that check that all traits are part of the same group,...since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits) zsloan
2020-11-18Fixed issue where the cofactor trait descriptions didn't work correctly...for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits) zsloan
2020-11-18Changed default Low/High colors for the correlation scatterplot cofactor...coloring to Blue/Red respectively (was originally Light Grey/Black) zsloan
2020-11-18Added some jquery closing the "Add To Collection" colorbox window after...its form is submitted zsloan
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if the...cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits) zsloan
2020-11-18Removed console.log and commented out statements from...get_traits_from_collection.js zsloan
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.js...(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot) zsloan
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleList...Test sample listBonfaceKilz
2020-11-18use f strings in marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-18use f strings in marker_regression/plink_mappingAlexanderlacuna
2020-11-17use better function namesAlexanderlacuna
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-12Import fontawesome css/js and used its info character for glossary links on s...zsloan
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-12refactor codeAlexanderlacuna
2020-11-12add pep8 fixes in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12add test for parse gemma output in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12modify tests for marker regressionAlexanderlacuna
2020-11-11add tests for marker_regression/rqtl_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/run_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-11Added Bonface to the footerzsloan
2020-11-11Merge pull request #477 from BonfaceKilz/feature/add-glossary-page...Feature/add glossary pageBonfaceKilz
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/ad...BonfaceKilz
2020-11-11Update image widthBonfaceKilz
2020-11-11Add basic markdown styling...* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container. BonfaceKilz
2020-11-10Changed logic for creating temp trait SampleList to account for both traits e...zsloan
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