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2016-06-14Added y axis line to probability plot and bar chart...Automatically determines number of decimal places to show on y axis of probability plot; still need to figure out how to do it with bar chart Added some logging to figure out MySQL connection issue zsloan
2016-06-07R/qtl pair scan now works again, though it takes a while (10-15 minutes)....Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc) zsloan
2016-06-03Made a bunch of changes to correlation and search result tables (mainly the f...zsloan
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ......Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. zsloan
2016-06-02Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2016-06-02Fixed some issues with global search result tables, including:...- Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js zsloan
2016-06-02Paper: addressing JOSS requirements for contribution, where to find... documentation and testing materials https://github.com/openjournals/joss-reviews/issues/25 Pjotr Prins
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25...last par: "Python" is spelled with a capital 'P' Pjotr Prins
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25...2nd par: "can be found in ___ guix-bioinformatics", please insert 'the article', 'the package', 'the lab fridge labeled'.. whichever is aproppriate ;-) Pjotr Prins
2016-06-02Paper: addressing https://github.com/openjournals/joss-reviews/issues/25...1st par: "experimental data" could be fleshed out in 2-3 words for the biologist reader (is it SNPs, microarray data, NGS, Y2H or manually counted individuals?) Pjotr Prins
2016-06-01Changed global gene search to no longer use server-side processingzsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
2016-05-31Merge branch 'master' of github.com:genenetwork/genenetwork2Pjotr Prins
2016-05-31Renamed TEXTDIR to GENERATED_TEXT_DIRPjotr Prins
2016-05-31Allow the json dir to be in the old location.Pjotr Prins
2016-05-30Merge pull request #163 from DannyArends/master...Fixing my affiliationPjotr Prins
2016-05-30Consistency in the orchid IDsDannyArends
2016-05-30Removing paper.json (unneeded)DannyArends
2016-05-30Fixing my affiliationDannyArends
2016-05-30Merge pull request #162 from arfon/patch-1...Fixing paper metadataPjotr Prins
2016-05-29Fixing paper metadataArfon Smith
2016-05-29JOSS: add symlinkPjotr Prins
2016-05-29Updated webserver linkPjotr Prins
2016-05-29CitationPjotr Prins
2016-05-29Merge branch 'master' of github.com:genenetwork/genenetwork2Pjotr Prins
2016-05-29docs: fix conflictPjotr Prins
2016-05-29Add zenodo doiPjotr Prins
2016-05-29JOSS: add MQM citation and fix typov2.0Pjotr Prins
2016-05-29Merge branch 'rebase' into stagingPjotr Prins
2016-05-29Added JOSS paperPjotr Prins
2016-05-27Fixed issue where the Non-BXD (or whatever group/inbred set) table would show......Fixed Interquartile Range link in basic statistics table zsloan
2016-05-27Improved appearance of p values below slider in correlation menu on trait pag...zsloan
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-26Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets zsloan
2016-05-25Docs: database reverse engineeringPjotr Prins
2016-05-25Docs: database reverse engineeringPjotr Prins
2016-05-24Docs: phenotypesPjotr Prins
2016-05-23Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. zsloan
2016-05-18Merge branch 'staging' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-18Updated dataset selection dropdown menus and fixed error caused by traits wit...zsloan
2016-05-18Fix conflictPjotr Prins
2016-05-18Merge pull request #3 from Brainiarc7/patch-3...Notes: We need to test some fields in the results pagePjotr Prins
2016-05-18Merge pull request #2 from Brainiarc7/patch-2...Added a new Navigation Test suitePjotr Prins
2016-05-18Docs: DBPjotr Prins
2016-05-18tests: removed empty linesPjotr Prins
2016-05-18Notes: We need to test some fields in the results page...Not yet implemented. WIP. Expected: Run all ~250 fields.Dennis E. Mungai
2016-05-18Added a new Navigation Test suite ...A new option for running the script is now available. See the output of ./test-website -n for usage.Dennis E. Mungai
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2 into developmentzsloan
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