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2013-04-18The plink_input is split into chunks that are stored in temp_data, butZachary Sloan
2013-04-18LMM code now reads in gzipped pickled plink snp iterator objectZachary Sloan
2013-04-18input file is now loaded by pickleZachary Sloan
2013-04-17Created file with pickled SNPIterator (from input.py) dataZachary Sloan
2013-04-17Added a benchmark for running the chunks code on the list of snpsZachary Sloan
2013-04-17Renamed chunk_test.py to chunks.pyZachary Sloan
2013-04-17Updated chunk_test.pyZachary Sloan
2013-04-17Added chunk_test.py which compared my/ and sam's split intoZachary Sloan
2013-04-17Wrote code that tests the effectiveness of the function that divides aZachary Sloan
2013-04-17Fixed small issue with the divide_into_chunks functionZachary Sloan
2013-04-16Wrote functions that divide a list into a specified number of chunksZachary Sloan
2013-04-16Checking in before making some changesZachary Sloan
2013-04-16Put most of the code calculating human association statistics inZachary Sloan
2013-04-11Fixed a bug with quick_search_table.pyZachary Sloan
2013-04-10Created template for quick search pageZachary Sloan
2013-04-09Have quick search working for phenotypesZachary Sloan
2013-04-09Nick's code works fine with human dataZachary Sloan
2013-04-05Loading bar now correctly shows the time to completionZachary Sloan
2013-04-05Made change to nginx config file that seems to have fixed theZachary Sloan
2013-04-05Got Nick's code working with the MDP datasets under the BXD group,Zachary Sloan
2013-04-05Made changes to get pylmm code working with HMDP datasetsZachary Sloan
2013-04-02Finished adding code that uses the plink genotype data ifZachary Sloan
2013-04-02Committing before splitting code that runs pylmm with plink filesZachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-28quick_search_table.py seems to be running OK for the PublishXRefZachary Sloan
2013-03-28quick_search_table.py now seems to run correctly for ProbeSetXRefZachary Sloan
2013-03-28Committing before putting quick_search_table code in classesZachary Sloan
2013-03-27Got quick_search_table.py to a point where it runs; willZachary Sloan
2013-03-27Worked on trying to get results for quick search to displayZachary Sloan
2013-03-26Continued working on quick_search_table.py, which now getsZachary Sloan
2013-03-26Created quick_search_table.py to create table with all of theZachary Sloan
2013-03-26Just checking in code while in the process of trying to getZachary Sloan
2013-03-22Began creating templates for login/registrationZachary Sloan
2013-03-22Added secure_server.pyZachary Sloan
2013-03-22Removed zach_settings.py from git trackingZachary Sloan
2013-03-21Did some work towards getting Nick's code working with our plinkZachary Sloan
2013-03-19In the process of trying to use Nick's pylmmKinship.py code toZachary Sloan
2013-03-19Added Nick's input.py file which uses plink .ped files as inputZachary Sloan
2013-03-19Searches work for the full access human datasets with mRNA assayZachary Sloan
2013-03-15Began work with implementing general searchZachary Sloan
2013-03-15Changes related to searching for selected points in marker regression plotZachary Sloan
2013-03-13Merge branch 'flask' of http://github.com/zsloan/genenetwork into flaskZachary Sloan
2013-03-13Added some to notesZachary Sloan
2013-03-12Added the script generating probesetfreeze data matrix filesZachary Sloan
2013-03-12Highlighting points works in Firefox but still doesn't work in chromeZachary Sloan
2013-03-12Got cashing working with pickleZachary Sloan
2013-03-09Trying to get caching working with pickle nowZachary Sloan
2013-03-08Caching is working for marker regression but really slowlyZachary Sloan
2013-03-08Refactored GWAS function in lmm.pyZachary Sloan
2013-03-07Progress bar is now completely workingZachary Sloan
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