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2020-08-03Remove "+" when concatenating strings...* wqflask/wqflask/api/gen_menu.py (build_types, build_datasets): Replace '+' when joining strings inside brackets BonfaceKilz
2020-08-03Fix some errors generated by running pylint...* wqflask/wqflask/api/gen_menu.py: Apply pylint. * wqflask/tests/api/test_gen_menu.py: Apply pylint. BonfaceKilz
2020-08-03Add extra test for "build_datasets"...* wqflask/tests/api/test_gen_menu.py: Add test. BonfaceKilz
2020-08-03Move variable to setUp...* wqflask/tests/api/test_gen_menu.py: Move variable BonfaceKilz
2020-08-03Add test for "gen_dropdown_json"...* wqflask/tests/api/test_gen_menu.py: Add new test BonfaceKilz
2020-08-03Add tests for "get_datasets"...* wqflask/tests/api/test_gen_menu.py: Add new tests BonfaceKilz
2020-08-03Update how boolean is returned...* wqflask/wqflask/api/gen_menu.py (get_datasets): convert return value directly using "bool" to be more general and cater for cases wher "None" is returned BonfaceKilz
2020-08-03Remove unreached "else" branch...* wqflask/wqflask/api/gen_menu.py(get_types): - Remove unnecessary comment. - Remove unreachable "else" branch. BonfaceKilz
2020-08-03Add tests for "get_types"...* wqflask/tests/api/test_gen_menu.py: Add new tests BonfaceKilz
2020-08-03Add test for "build_types"...* wqflask/tests/api/test_gen_menu.py: New test BonfaceKilz
2020-08-03Clean up "if ... else" conditional...* wqflask/wqflask/api/gen_menu.py (build_datasets): Make conditionals more Pythonic BonfaceKilz
2020-08-03Reformat sql queries to be one line...* wqflask/wqflask/api/gen_menu.py (build_datasets, build_types): Strip white spaces and newlines from query and make the sql query one line. BonfaceKilz
2020-07-30Add tests for "build_datasets"...* wqflask/tests/api/test_gen_menu.py: Add new tests for "build_datasets" function BonfaceKilz
2020-07-29Update how boolean is returned...* wqflask/wqflask/api/gen_menu.py (phenotypes_exist, genotypes_exist): Convert sql result to boolean instead of only checking for "None". BonfaceKilz
2020-07-29Reformat sql queries to be one line...* wqflask/wqflask/api/gen_menu.py (get_species, get_groups, phenotypes_exist) (genotypes_exist)[sql]: Strip white spaces and newlines from query and make the sql query one line. BonfaceKilz
2020-07-29Add tests for "phenotypes_exist" and "genotypes_exist"...* wqflask/tests/api/test_gen_menu.py: Add new tests BonfaceKilz
2020-07-29Add test for "get_groups"...* wqflask/tests/api/test_gen_menu.py: test that "get_groups" uses the correct sql query and returns the correct group data structure. BonfaceKilz
2020-07-29Add initial gen_menu test...* wqflask/tests/api/__init__.py: Add it * wqflask/tests/api/test_gen_menu.py: Add test for get_species BonfaceKilz
2020-07-28Fixes issue where zooming in on mapping results in some browsers caused...the original tab's contents to be removed * wqflask/wqflask/templates/mapping_results.html: minor change to add spaces for readability * wqflask/wqflask/marker_regression/display_mapping_results.py: Removed "return" from chrView and rangeView since it appears to remove original tab's contents in some browers when submitting form zsloan
2020-07-28Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-07-28Merge pull request #414 from BonfaceKilz/tests/add-tests-for-base-module...Tests/add tests for base modulezsloan
2020-07-28Setting owner to None since super-users should allow for people like Rob or m...zsloan
2020-07-27Clean up webqtlCaseData class...* wqflask/base/webqtlCaseData.py (webqtlCaseData): - Remove obsolete 'Object' from Class inheritance - Replace 'str' with 'case_data_string' variable- it collides with python in-builts - Use pythonic 'is Not None' form - Remove redundancy in 'if' forms - Update copyright header BonfaceKilz
2020-07-27Add unittests for WebqtlCaseData...* wqflask/tests/base/test_webqtl_case_data.py: Add it BonfaceKilz
2020-07-27Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset): - Add set_dataset_key - Remove __call__ method BonfaceKilz
2020-07-27Test that non-existent keys in Dataset are set correctly...* wqflask/tests/base/test_data_set.py: Add more tests. BonfaceKilz
2020-07-27Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance BonfaceKilz
2020-07-27Check that Redis is called correctly...* wqflask/tests/base/test_data_set.py: assert that `set` and `get` are called correctly BonfaceKilz
2020-07-27Add test case for empty redis instance for DatasetType...* wqflask/tests/base/test_data_set.py(tests): Check correct results are returned when Redis is empty * wqflask/tests/base/data.py(tests): New file. Adds json test data. BonfaceKilz
2020-07-27Apply py-lint...* wqflask/tests/base/test_data_set.py: Apply pylint BonfaceKilz
2020-07-27Merge pull request #411 from pjotrp/testing...Updating docsPjotr Prins
2020-07-27Merge branch 'testing' into testingPjotr Prins
2020-07-27Merge pull request #412 from BonfaceKilz/docs/document-how-to-run-tests...Docs/document how to run testsPjotr Prins
2020-07-27Document how to run tests...* doc/testing.org: - Update how Mechanical Robs works. Python replaced Ruby as the testing tool - Add section that describes how to run unit tests BonfaceKilz
2020-07-26Document how to run tests...* README.md: - Add details on how to run unit tests - Update link that points to Mechanical Rob BonfaceKilz
2020-07-26Delete tests/unittests folder...* tests/unittests: Delete it. All unittests were moved to wqflask/tests in 3d6483e8 BonfaceKilz
2020-07-25Updating docs and show how to include a local Python modulePjotr Prins
2020-07-25The variable is never defined, so let's default to "none"Pjotr Prins
2020-07-25Animated gifsPjotr Prins
2020-07-25Removing bimbam check. We'll get rid of bimbam anyway.Pjotr Prins
2020-07-25Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
2020-07-24Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add testszsloan
2020-07-25Update import statement in test_general_object.py...* test/unittest/base/test_general_object.py: replace the import statement to use the module path instead of the path referenced from PYTHONPATH BonfaceKilz
2020-07-24Added missing JS library that caused adding markers to collections to not workzsloan
2020-07-24Minor aesthetic indentation change in htmlzsloan
2020-07-24Added to menu option for user to change some basic user information, like nam...zsloan
2020-07-24Fixed queries that were wrongly returning Data IDs as Nszsloan
2020-07-24Move .coveragerc to wqflask/...* .coveragerc: Move .coveragerc to wqflask so that the coverage test tool can pick it up automatically without having to add an `--rc-file` flag BonfaceKilz
2020-07-24Add basic config for coverage tool...* .coveragerc: add it BonfaceKilz
2020-07-24Rename test_numify.py to test_formatting.pyBonfaceKilz
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