Age | Commit message (Expand) | Author |
2015-03-15 | Comment | Pjotr Prins |
2015-03-15 | A little cleanup | Pjotr Prins |
2015-03-15 | Added multi-core kinship support | Pjotr Prins |
2015-03-14 | Threading: Sleep while waiting | Pjotr Prins |
2015-03-14 | Allow the GC to do its job | Pjotr Prins |
2015-03-14 | Allow queue to be 2xCPU. Disable output files | Pjotr Prins |
2015-03-14 | Kinship multi-core: don't overload the queue with jobs | Pjotr Prins |
2015-03-14 | Parallel K calculation is fixed | Pjotr Prins |
2015-03-14 | Tests and indentation | Pjotr Prins |
2015-03-14 | Conditional run of K calculation | Pjotr Prins |
2015-03-14 | Adding tests | Pjotr Prins |
2015-03-14 | Adding assertions | Pjotr Prins |
2015-03-14 | Allow empty K to be passed in | Pjotr Prins |
2015-03-14 | Removing all references to is_testing | Pjotr Prins |
2015-03-14 | Working on kinship: GN2 and simple matrix multiplicatino agree | Pjotr Prins |
2015-03-14 | More MAF | Pjotr Prins |
2015-03-14 | Replace missing values with MAF | Pjotr Prins |
2015-03-14 | Testing kinship works on small G | Pjotr Prins |
2015-03-14 | Merge branch 'zsloan' into dev | Pjotr Prins |
2015-03-14 | kinship: working on pylmm | Pjotr Prins |
2015-03-13 | runlmm.py: remove extraneous conversion | Pjotr Prins |
2015-03-13 | & Refactoring | Pjotr Prins |
2015-03-13 | & runlmm.py: added assertions for default run | Pjotr Prins |
2015-03-12 | lmm: use deep-copy to avoid side-effects | Pjotr Prins |
2015-03-12 | weird fix for lmm result - Python weirdness | Pjotr Prins |
2015-03-12 | Check G | Pjotr Prins |
2015-03-12 | Debug info | Pjotr Prins |
2015-03-12 | process_plink.py: remove unused file | Pjotr Prins |
2015-03-12 | Combined searches now work for most terms...Fixed appearance of the scatterplot matrix
Changed pylmm code back because of an error after I had switched to Pjotr's code
| Zachary Sloan |
2015-03-12 | Just committing changes to search so I can pull to production branch | Zachary Sloan |
2015-03-11 | runlmm.py: message | Pjotr Prins |
2015-03-11 | Adding multi-core kinship.py | Pjotr Prins |
2015-03-11 | Merged lmm branch | Pjotr Prins |
2015-03-11 | lmm.py: change message on running from CLI | Pjotr Prins |
2015-03-11 | & Added testing option, now the results match | Pjotr Prins |
2015-03-10 | Normalisation | Pjotr Prins |
2015-03-10 | lmm.py: debugging output | Pjotr Prins |
2015-03-10 | Missing genotypes and normalize | Pjotr Prins |
2015-03-10 | Populationg Redis from TSV data | Pjotr Prins |
2015-03-10 | Refactored tsvreader out | Pjotr Prins |
2015-03-10 | Factoring out tsvreaders | Pjotr Prins |
2015-03-10 | convertlmm.py: add SNP names | Pjotr Prins |
2015-03-10 | Turn HAB encoding into pylmm genotyping | Pjotr Prins |
2015-03-09 | Add HAB encoding | Pjotr Prins |
2015-03-09 | Write genotype file non-transposed | Pjotr Prins |
2015-03-09 | Write genotype file (start) | Pjotr Prins |
2015-03-09 | Write genotype file (start) | Pjotr Prins |
2015-03-09 | plink: missing values in bim | Pjotr Prins |
2015-03-09 | Now we can use print in lamdba | Pjotr Prins |
2015-03-09 | Not using numpy - is part of the caller | Pjotr Prins |