diff options
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/base/data_set.py | 2 | ||||
| -rwxr-xr-x | wqflask/wqflask/correlation/show_corr_results.py | 6 |
2 files changed, 2 insertions, 6 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 2a79dc9c..a9a8beb2 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -564,7 +564,7 @@ class DataSet(object): if self.type == "Publish": query += """ - WHERE {}XRef.PublicationId = {}Freeze.Id + WHERE {}XRef.InbredSetId = {}Freeze.InbredSetId and {}Freeze.Name = '{}' and {}.Id = {}XRef.{}Id order by {}.Id diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 1cc932a0..506610f1 100755 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -98,8 +98,6 @@ class CorrelationResults(object): with Bench("Doing correlations"): helper_functions.get_species_dataset_trait(self, start_vars) - print("TRAIT SYMBOL:", self.this_trait.symbol) - self.dataset.group.read_genotype_file() corr_samples_group = start_vars['corr_samples_group'] @@ -108,7 +106,7 @@ class CorrelationResults(object): self.corr_type = start_vars['corr_type'] self.corr_method = start_vars['corr_sample_method'] self.get_formatted_corr_type() - self.return_number = 50 + self.return_number = int(start_vars['corr_return_results']) #The two if statements below append samples to the sample list based upon whether the user #rselected Primary Samples Only, Other Samples Only, or All Samples @@ -485,8 +483,6 @@ class CorrelationResults(object): sample_r, sample_p = scipy.stats.spearmanr(this_trait_vals, target_vals) self.correlation_data[trait] = [sample_r, sample_p, num_overlap] - - def do_tissue_corr_for_all_traits_2(self): """Comments Possibly Out of Date!!!!! |