diff options
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/base/webqtlCaseData.py | 1 | ||||
| -rwxr-xr-x | wqflask/wqflask/show_trait/SampleList.py | 2 | ||||
| -rwxr-xr-x | wqflask/wqflask/show_trait/show_trait.py | 2 |
3 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py index 6dc0c145..5927b0f4 100755 --- a/wqflask/base/webqtlCaseData.py +++ b/wqflask/base/webqtlCaseData.py @@ -34,6 +34,7 @@ class webqtlCaseData(object): self.value = value # Trait Value self.variance = variance # Trait Variance self.num_cases = num_cases # Number of individuals/cases + self.prob_plot_value = None # Ordered value for probability plot; this is sort of wrong but not sure how else to do this self.z_score = None self.extra_attributes = None self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word) diff --git a/wqflask/wqflask/show_trait/SampleList.py b/wqflask/wqflask/show_trait/SampleList.py index 8e57e210..d196e722 100755 --- a/wqflask/wqflask/show_trait/SampleList.py +++ b/wqflask/wqflask/show_trait/SampleList.py @@ -116,7 +116,7 @@ class SampleList(object): for i, sample in enumerate([sample for sample in self.sample_list if sample.value != None]): print("sample is:", sample) sample.z_score = z_scores[i] - sample.value = values[i] + sample.prob_plot_value = values[i] def do_outliers(self): values = [sample.value for sample in self.sample_list if sample.value != None] diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index 8356753b..3034dec8 100755 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -121,7 +121,7 @@ class ShowTrait(object): sample_z_scores = [] for sample_list in sample_lists: for sample in sample_list: - sample_vals.append(sample.value) + sample_vals.append(sample.prob_plot_value) sample_z_scores.append(sample.z_score) probability_plot_data.append(sample_z_scores) probability_plot_data.append(sample_vals) |