diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/templates/gn3_wgcna_results.html (renamed from wqflask/wqflask/templates/test_wgcna_results.html) | 35 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/wgcna/gn3_wgcna.py | 13 |
3 files changed, 42 insertions, 8 deletions
diff --git a/wqflask/wqflask/templates/test_wgcna_results.html b/wqflask/wqflask/templates/gn3_wgcna_results.html index 952f479e..8a31bf28 100644 --- a/wqflask/wqflask/templates/test_wgcna_results.html +++ b/wqflask/wqflask/templates/gn3_wgcna_results.html @@ -75,6 +75,12 @@ {% else %} <div> + <div> + <h2 style="text-align:center;">Parameters used</h2> + + <table id="summary" class="display" width="40vw" ></table> + + </div> <div > <h2 style="text-align:center">Soft Thresholds </h2> <div class="grid_container"> @@ -133,13 +139,34 @@ <script type="text/javascript"> -let results = {{results|safe}} - -let phenoModules = results["data"]["output"]["net_colors"] +let phenoModules = {{results|safe}}["data"]["output"]["net_colors"] let phenotypes = Object.keys(phenoModules) let phenoMods = Object.values(phenoModules) let {col_names,mod_dataset} = {{data|safe}} +const summary = { + modules_found:phenoMods.length, + ...{{parameters|safe}} + +} + + $("#summary").DataTable( { + + data: Object.keys(summary).map((key)=>{ + return [key,summary[key]] + }), + columns: [ { + title: "parameter", + + }, + + { + title:" param_values" + } + ] + }) + + $('#eigens').DataTable( { data: mod_dataset, columns: col_names.map((name)=>{ @@ -162,4 +189,4 @@ let {col_names,mod_dataset} = {{data|safe}} </script> -{% endblock %}
\ No newline at end of file +{% endblock %} diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index b2cf95fb..31e31875 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -345,7 +345,7 @@ def wcgna_setup(): def wcgna_results(): """call the gn3 api to get wgcna response data""" results = run_wgcna(dict(request.form)) - return render_template("test_wgcna_results.html", **results) + return render_template("gn3_wgcna_results.html", **results) @app.route("/ctl_setup", methods=('POST',)) def ctl_setup(): diff --git a/wqflask/wqflask/wgcna/gn3_wgcna.py b/wqflask/wqflask/wgcna/gn3_wgcna.py index 7bf5c62b..ab7fe46c 100644 --- a/wqflask/wqflask/wgcna/gn3_wgcna.py +++ b/wqflask/wqflask/wgcna/gn3_wgcna.py @@ -76,8 +76,6 @@ def run_wgcna(form_data): wgcna_api = f"{GN3_LOCAL_URL}/api/wgcna/run_wgcna" - # parse form data - trait_dataset = fetch_trait_data(form_data) form_data["minModuleSize"] = int(form_data["MinModuleSize"]) @@ -86,8 +84,10 @@ def run_wgcna(form_data): try: + unique_strains = list(set(trait_dataset["sample_names"])) + response = requests.post(wgcna_api, json={ - "sample_names": list(set(trait_dataset["sample_names"])), + "sample_names": unique_strains, "trait_names": trait_dataset["trait_names"], "trait_sample_data": list(trait_dataset["input"].values()), **form_data @@ -98,8 +98,15 @@ def run_wgcna(form_data): status_code = response.status_code response = response.json() + parameters = { + "nstrains": len(unique_strains), + "nphe": len(trait_dataset["trait_names"]), + **{key: val for key, val in form_data.items() if key not in ["trait_list"]} + } + return {"error": response} if status_code != 200 else { "error": 'null', + "parameters": parameters, "results": response, "data": process_wgcna_data(response["data"]), "image": process_image(response["data"]) |