diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/metadata_edits.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/wqflask/wqflask/metadata_edits.py b/wqflask/wqflask/metadata_edits.py index 501ddba0..a3b7f307 100644 --- a/wqflask/wqflask/metadata_edits.py +++ b/wqflask/wqflask/metadata_edits.py @@ -46,7 +46,7 @@ from gn3.db import fetchall from gn3.db import fetchone from gn3.db import insert from gn3.db import update -from gn3.db.datasets import retrieve_sample_list, retrieve_group_name, retrieve_trait_dataset +from gn3.db.datasets import retrieve_sample_list, retrieve_phenotype_group_name, retrieve_trait_dataset from gn3.db.metadata_audit import MetadataAudit from gn3.db.phenotypes import Phenotype from gn3.db.phenotypes import Probeset @@ -133,7 +133,7 @@ def display_phenotype_metadata(dataset_id: str, name: str): with database_connection(get_setting("SQL_URI")) as conn: _d = edit_phenotype(conn=conn, name=name, dataset_id=dataset_id) - group_name = retrieve_group_name(dataset_id, conn) + group_name = retrieve_phenotype_group_name(conn, dataset_id) sample_list = retrieve_sample_list(group_name) sample_data = get_trait_sample_data(conn, name, _d.get("publish_xref").phenotype_id) @@ -196,7 +196,7 @@ def update_phenotype(dataset_id: str, name: str): ) diff_data = {} with database_connection(get_setting("SQL_URI")) as conn: - group_name = retrieve_group_name(dataset_id, conn) + group_name = retrieve_phenotype_group_name(conn, dataset_id) sample_list = retrieve_sample_list(group_name) headers = ["Strain Name", "Value", "SE", "Count"] base_csv = get_trait_csv_sample_data( @@ -499,8 +499,8 @@ def get_sample_data_as_csv(dataset_id: str, phenotype_id: int): conn=conn, trait_name=str(dataset_id), phenotype_id=str(phenotype_id), - sample_list=retrieve_sample_list(retrieve_group_name( - dataset_id, conn)) + sample_list=retrieve_sample_list( + retrieve_phenotype_group_name(conn, dataset_id)) ), mimetype="text/csv", headers={ |