diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 73 |
1 files changed, 61 insertions, 12 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index bc3b4fd7..f279bcc3 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -73,23 +73,71 @@ def set_template_vars(start_vars, correlation_data): return correlation_data - min_expr = get_float(start_vars, 'min_expr') - p_range_lower = get_float(start_vars, 'p_range_lower', -1.0) - p_range_upper = get_float(start_vars, 'p_range_upper', 1.0) - if ('loc_chr' in start_vars and - 'min_loc_mb' in start_vars and - 'max_loc_mb' in start_vars): +def apply_filters(target_trait, target_dataset, **filters): + def __p_val_filter__(p_lower, p_upper): + return not (float(trait.get('corr_coefficient', 0.0)) >= p_lower and + float(trait.get('corr_coefficient', 0.0)) <= p_upper) - location_chr = get_string(start_vars, 'loc_chr') - min_location_mb = get_int(start_vars, 'min_loc_mb') - max_location_mb = get_int(start_vars, 'max_loc_mb') - else: - location_chr = min_location_mb = max_location_mb = None + def __min_filter__(min_expr): + if (target_dataset['type'] in ["ProbeSet", "Publish"] and target_trait['mean']): + return (min_expr != None) and (float(target_trait['mean']) < min_expr) + + return False + + def __location_filter__(location_type, location_chr, + min_location_mb, max_location_mb): + + if target_dataset["type"] in ["ProbeSet", "'Geno"] and location_type == "gene": + + return ((location_chr != None and (target_trait["chr"] != location_chr) + or + (min_location_mb != None) and ( + float(target_trait['mb']) < min_location_mb) + or + max_location_mb != None) and + (float(target_trait['mb']) > float(max_location_mb) + )) + elif target_dataset["type"] in ["ProbeSet", "Publish"]: + return ((location_chr != None and (target_trait["lrs_chr"] != location_chr) + or + (min_location_mb != None) and ( + float(target_trait['lrs_mb']) < float(min_location_mb)) + or + (max_location_mb != None) and ( + float(target_trait['lrs_mb']) > float(max_location_mb)) + ) + ) + + return True + + + + # check if one of the condition is not met i.e One is True + + return (__p_val_filter__( + filters.get("p_range_lower"), + filters.get("p_range_upper") + ) + or + ( + __min_filter__( + filters.get("min_expr") + ) + ) + or + __location_filter__( + filters.get("location_type"), + filters.get("location_chr"), + filters.get("min_location_mb"), + filters.get("max_location_mb") + + + ) + ) def get_user_filters(start_vars): - """ a user can filter the results based on different criterias""" (min_expr, p_min, p_max) = ( get_float(start_vars, 'min_expr'), get_float(start_vars, 'p_range_lower', -1.0), @@ -111,6 +159,7 @@ def get_user_filters(start_vars): "p_range_lower": p_min, "p_range_upper": p_max, "location_chr": location_chr, + "location_type": start_vars['location_type'], "min_location_mb": min_location_mb, "max_location_mb": max_location_mb |