diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/base/webqtlCaseData.py | 11 | ||||
| -rw-r--r-- | wqflask/wqflask/show_trait/show_trait.py | 16 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js | 222 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/show_trait.js | 24 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/show_trait.html | 284 |
5 files changed, 261 insertions, 296 deletions
diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py index 2844cedd..3cf2d80d 100644 --- a/wqflask/base/webqtlCaseData.py +++ b/wqflask/base/webqtlCaseData.py @@ -41,6 +41,8 @@ class webqtlCaseData: self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word) self.outlier = None # Not set to True/False until later + self.first_attr_col = self.get_first_attr_col() + def __repr__(self): case_data_string = "<webqtlCaseData> " if self.value is not None: @@ -79,3 +81,12 @@ class webqtlCaseData: if self.num_cases is not None: return "%s" % self.num_cases return "x" + + def get_first_attr_col(self): + col_num = 4 + if self.variance is not None: + col_num += 2 + if self.num_cases is not None: + col_num += 1 + + return col_num
\ No newline at end of file diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index bc24098a..f1bd6f27 100644 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -275,7 +275,9 @@ class ShowTrait(object): data_scale = self.dataset.data_scale, sample_group_types = self.sample_group_types, sample_lists = sample_lists, - attribute_names = self.sample_groups[0].attributes, + se_exists = self.sample_groups[0].se_exists, + has_num_cases = self.has_num_cases, + attributes = self.sample_groups[0].attributes, categorical_vars = ",".join(categorical_var_list), num_values = self.num_values, qnorm_values = self.qnorm_vals, @@ -454,6 +456,7 @@ class ShowTrait(object): self.primary_sample_names = primary_sample_names self.dataset.group.allsamples = all_samples_ordered + def quantile_normalize_vals(sample_groups): def normf(trait_vals): ranked_vals = ss.rankdata(trait_vals) @@ -492,6 +495,7 @@ def quantile_normalize_vals(sample_groups): return qnorm_by_group + def get_z_scores(sample_groups): zscore_by_group = [] for sample_type in sample_groups: @@ -516,6 +520,7 @@ def get_z_scores(sample_groups): return zscore_by_group + def get_nearest_marker(this_trait, this_db): this_chr = this_trait.locus_chr logger.debug("this_chr:", this_chr) @@ -539,6 +544,7 @@ def get_nearest_marker(this_trait, this_db): else: return result[0][0] + def get_table_widths(sample_groups, has_num_cases=False): stats_table_width = 250 if len(sample_groups) > 1: @@ -555,6 +561,7 @@ def get_table_widths(sample_groups, has_num_cases=False): return stats_table_width, trait_table_width + def has_num_cases(this_trait): has_n = False if this_trait.dataset.type != "ProbeSet" and this_trait.dataset.type != "Geno": @@ -565,6 +572,7 @@ def has_num_cases(this_trait): return has_n + def get_trait_units(this_trait): unit_type = "" inside_brackets = False @@ -584,6 +592,7 @@ def get_trait_units(this_trait): return unit_type + def check_if_attr_exists(the_trait, id_type): if hasattr(the_trait, id_type): if getattr(the_trait, id_type) == None or getattr(the_trait, id_type) == "": @@ -593,6 +602,7 @@ def check_if_attr_exists(the_trait, id_type): else: return False + def get_ncbi_summary(this_trait): if check_if_attr_exists(this_trait, 'geneid'): #ZS: Need to switch this try/except to something that checks the output later @@ -605,6 +615,7 @@ def get_ncbi_summary(this_trait): else: return None + def get_categorical_variables(this_trait, sample_list): categorical_var_list = [] @@ -623,6 +634,7 @@ def get_categorical_variables(this_trait, sample_list): return categorical_var_list + def get_genotype_scales(genofiles): geno_scales = {} if type(genofiles) is list: @@ -634,6 +646,7 @@ def get_genotype_scales(genofiles): return geno_scales + def get_scales_from_genofile(file_location): geno_path = locate_ignore_error(file_location, 'genotype') @@ -686,6 +699,7 @@ def get_scales_from_genofile(file_location): if i > first_marker_line + 10: break + #ZS: This assumes that both won't be all zero, since if that's the case mapping shouldn't be an option to begin with if mb_all_zero: return [["morgan", "cM"]] diff --git a/wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js b/wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js new file mode 100644 index 00000000..41ddc088 --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js @@ -0,0 +1,222 @@ +// ZS: This file initializes the tables for the show_trait page + +// ZS: This variable is just created to get the column position of the first case attribute (if case attributes exist), since it's needed to set the row classes in createdRow for the DataTable +attribute_start_pos = 3 +if (js_data.se_exists === "true") { + attribute_start_pos += 2 +} +if (js_data.has_num_cases === "true") { + attribute_start_post += 1 +} + +build_columns = function() { + let column_list = [ + { + 'data': null, + 'orderDataType': "dom-checkbox", + 'searchable' : false, + 'render': function(data, type, row, meta) { + return '<input type="checkbox" name="searchResult" style="min-height: 20px;" class="checkbox edit_sample_checkbox" value="">' + } + }, + { + 'title': "ID", + 'type': "natural", + 'searchable' : false, + 'data': "this_id" + }, + { + 'title': "Sample", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + return '<span class="edit_sample_sample_name">' + data.name + '</span>' + } + }, + { + 'title': "<div style='text-align: right;'>Value</div>", + 'orderDataType': "dom-input", + 'type': "cust-txt", + 'data': null, + 'render': function(data, type, row, meta) { + if (data.value == null) { + return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="x" size=6 maxlength=6>' + } else { + return '<input type="text" data-value="' + data.value.toFixed(3) + '" data-qnorm="' + js_data['qnorm_values'][0][parseInt(data.this_id) - 1] + '" data-zscore="' + js_data['zscore_values'][0][parseInt(data.this_id) - 1] + '" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="' + data.value.toFixed(3) + '" size=6 maxlength=6>' + } + } + } + ]; + + if (js_data.se_exists === "true") { + column_list.push( + { + 'bSortable': false, + 'type': "natural", + 'data': null, + 'searchable' : false, + 'render': function(data, type, row, meta) { + return '±' + } + }, + { + 'title': "<div style='text-align: right;'>SE</div>", + 'orderDataType': "dom-input", + 'type': "cust-txt", + 'data': null, + 'render': function(data, type, row, meta) { + if (data.variance == null) { + return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="x" size=6 maxlength=6>' + } else { + return '<input type="text" data-value="' + data.variance.toFixed(3) + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="' + data.variance.toFixed(3) + '" size=6 maxlength=6>' + } + } + } + ); + } + + if (js_data.has_num_cases === "true") { + column_list.push( + { + 'title': "<div style='text-align: right;'>N</div>", + 'orderDataType': "dom-input", + 'type': "cust-txt", + 'data': null, + 'render': function(data, type, row, meta) { + if (data.num_cases == null || data.num_cases == undefined) { + return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="x" size=4 maxlength=4>' + } else { + return '<input type="text" data-value="' + data.num_cases + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="' + data.num_cases + '" size=4 maxlength=4>' + } + } + } + ); + } + + attr_keys = Object.keys(js_data.attributes).sort((a, b) => (js_data.attributes[a].name > js_data.attributes[b].name) ? 1 : -1) + for (i = 0; i < attr_keys.length; i++){ + column_list.push( + { + 'title': "<div style='text-align: " + js_data.attributes[attr_keys[i]].alignment + "'>" + js_data.attributes[attr_keys[i]].name + "</div>", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + attr_name = Object.keys(data.extra_attributes).sort((a, b) => (a > b) ? 1 : -1)[meta.col - data.first_attr_col] + if (attr_name != null && attr_name != undefined){ + return data.extra_attributes[attr_name] + } else { + return "" + } + } + } + ) + } + + return column_list +} + +var primary_table = $('#samples_primary').DataTable( { + 'initComplete': function(settings, json) { + $('.edit_sample_value').change(function() { + edit_data_change(); + }); + }, + 'createdRow': function ( row, data, index ) { + $(row).attr('id', "Primary_" + data.this_id) + $(row).addClass("value_se"); + if (data.outlier) { + $(row).addClass("outlier"); + } + $('td', row).eq(1).addClass("column_name-Index") + $('td', row).eq(2).addClass("column_name-Sample") + $('td', row).eq(3).addClass("column_name-Value") + if (js_data.se_exists === "true") { + $('td', row).eq(5).addClass("column_name-SE") + if (js_data.has_num_cases === "true") { + $('td', row).eq(6).addClass("column_name-num_cases") + } else { + if (js_data.has_num_cases === "true") { + $('td', row).eq(4).addClass("column_name-num_cases") + } + } + } else { + if (js_data.has_num_cases === "true") { + $('td', row).eq(4).addClass("column_name-num_cases") + } + } + + sorted_key_list = Object.keys(js_data.attributes).sort() + for (i=0; i < sorted_key_list.length; i++) { + $('td', row).eq(attribute_start_pos + i).addClass("column_name-" + js_data.attributes[sorted_key_list[i]].name) + $('td', row).eq(attribute_start_pos + i).attr("style", "text-align: " + js_data.attributes[sorted_key_list[i]].alignment + "; padding-top: 2px; padding-bottom: 0px;") + } + }, + 'data': js_data['sample_lists'][0], + 'columns': build_columns(), + 'order': [[1, "asc"]], + 'sDom': "Ztr", + 'autoWidth': true, + 'orderClasses': true, + "scrollY": "50vh", + 'scroller': true, + 'scrollCollapse': true +} ); + +primary_table.on( 'order.dt search.dt draw.dt', function () { + primary_table.column(1, {search:'applied', order:'applied'}).nodes().each( function (cell, i) { + cell.innerHTML = i+1; + } ); +} ).draw(); + +$('#primary_searchbox').on( 'keyup', function () { + primary_table.search($(this).val()).draw(); +} ); + +if (js_data.sample_lists.length > 1){ + var other_table = $('#samples_other').DataTable( { + 'initComplete': function(settings, json) { + $('.edit_sample_value').change(function() { + edit_data_change(); + }); + }, + 'createdRow': function ( row, data, index ) { + $(row).attr('id', "Primary_" + data.this_id) + $(row).addClass("value_se"); + if (data.outlier) { + $(row).addClass("outlier"); + } + $('td', row).eq(1).addClass("column_name-Index") + $('td', row).eq(2).addClass("column_name-Sample") + $('td', row).eq(3).addClass("column_name-Value") + if (js_data.se_exists === "true") { + $('td', row).eq(5).addClass("column_name-SE") + if (js_data.has_num_cases === "true") { + $('td', row).eq(6).addClass("column_name-num_cases") + } else { + if (js_data.has_num_cases === "true") { + $('td', row).eq(4).addClass("column_name-num_cases") + } + } + } else { + if (js_data.has_num_cases === "true") { + $('td', row).eq(4).addClass("column_name-num_cases") + } + } + + sorted_key_list = Object.keys(js_data.attributes).sort() + for (i=0; i < sorted_key_list.length; i++) { + $('td', row).eq(attribute_start_pos + i).addClass("column_name-" + js_data.attributes[sorted_key_list[i]].name) + $('td', row).eq(attribute_start_pos + i).attr("style", "text-align: " + js_data.attributes[sorted_key_list[i]].alignment + "; padding-top: 2px; padding-bottom: 0px;") + } + }, + 'data': js_data['sample_lists'][1], + 'columns': build_columns(), + 'order': [[1, "asc"]], + 'sDom': "Ztr", + 'autoWidth': true, + 'orderClasses': true, + "scrollY": "50vh", + 'scroller': true, + 'scrollCollapse': true + } ); +}
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index c0784073..0b5ae6f9 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -538,10 +538,9 @@ populate_sample_attributes_values_dropdown = function() { var attribute_info, key, sample_attributes, selected_attribute, value, _i, _len, _ref, _ref1, _results; $('#attribute_values').empty(); sample_attributes = {}; - _ref = js_data.attribute_names; - for (key in _ref) { - if (!__hasProp.call(_ref, key)) continue; - attribute_info = _ref[key]; + attr_keys = Object.keys(js_data.attributes).sort(); + for (i=0; i < attr_keys.length; i++) { + attribute_info = js_data.attributes[attr_keys[i]]; sample_attributes[attribute_info.name] = attribute_info.distinct_values; } selected_attribute = $('#exclude_menu').val().replace("_", " "); @@ -549,13 +548,15 @@ populate_sample_attributes_values_dropdown = function() { _results = []; for (_i = 0, _len = _ref1.length; _i < _len; _i++) { value = _ref1[_i]; - _results.push($(create_value_dropdown(value)).appendTo($('#attribute_values'))); + if (value != ""){ + _results.push($(create_value_dropdown(value)).appendTo($('#attribute_values'))); + } } return _results; }; -if (Object.keys(js_data.attribute_names).length > 0) { - populate_sample_attributes_values_dropdown(); -} + +populate_sample_attributes_values_dropdown(); + $('#exclude_menu').change(populate_sample_attributes_values_dropdown); block_by_attribute_value = function() { var attribute_name, cell_class, exclude_by_value; @@ -859,10 +860,9 @@ get_sample_table_data = function(table_name) { if ($(element).find('.edit_sample_num_cases').length > 0) { row_data.num_cases = $(element).find('.edit_sample_num_cases').val(); } - _ref = js_data.attribute_names; - for (key in _ref) { - if (!__hasProp.call(_ref, key)) continue; - attribute_info = _ref[key]; + attr_keys = Object.keys(js_data.attributes).sort() + for (i=0; i < attr_keys.length; i++) { + attribute_info = js_data.attributes[attr_keys[i]]; row_data[attribute_info.name] = $.trim($(element).find('.column_name-' + attribute_info.name.replace(" ", "_").replace("/", "\\/")).text()); } return samples.push(row_data); diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html index b7bffd79..0a79ad48 100644 --- a/wqflask/wqflask/templates/show_trait.html +++ b/wqflask/wqflask/templates/show_trait.html @@ -153,6 +153,7 @@ <script type="text/javascript" src="https://cdn.datatables.net/scroller/2.0.2/js/dataTables.scroller.min.js"></script> <script language="javascript" type="text/javascript" src="/static/new/packages/noUiSlider/nouislider.js"></script> <script language="javascript" type="text/javascript" src="/static/new/javascript/get_covariates_from_collection.js"></script> + <script type="text/javascript" src="/static/new/javascript/initialize_show_trait_tables.js"></script> <script type="text/javascript" charset="utf-8"> @@ -209,156 +210,6 @@ } }); - //ZS: This variable is just created to get the column position of the first case attribute, since it's needed to set the row classes in createdRow for the DataTable - {% if sample_groups[0].attributes|length > 0 %} - {% if sample_groups[0].se_exists %} - {% if has_num_cases %} - attribute_start_pos = 6 - {% else %} - attribute_start_pos = 5 - {% endif %} - {% else %} - {% if has_num_cases %} - attribute_start_pos = 4 - {% else %} - attribute_start_pos = 3 - {% endif %} - {% endif %} - {% endif %} - - var primary_table = $('#samples_primary').DataTable( { - 'initComplete': function(settings, json) { - $('.edit_sample_value').change(function() { - edit_data_change(); - }); - }, - 'createdRow': function ( row, data, index ) { - $(row).attr('id', "Primary_" + data.this_id) - $(row).addClass("value_se"); - if (data.outlier) { - $(row).addClass("outlier"); - } - $('td', row).eq(0).attr("align", "center"); - $('td', row).eq(0).attr("style", "padding: 2px 0px 0px 2px;"); - $('td', row).eq(1).addClass("column_name-Index") - $('td', row).eq(1).attr("align", "right"); - $('td', row).eq(1).attr("style", "padding: 2px 4px 0px 2px;"); - $('td', row).eq(2).addClass("column_name-Sample") - $('td', row).eq(3).addClass("column_name-Value") - $('td', row).eq(3).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% if sample_groups[0].se_exists %} - $('td', row).eq(4).attr("align", "center"); - $('td', row).eq(4).attr("style", "padding-left: 2px; padding-right: 2px;"); - $('td', row).eq(5).addClass("column_name-SE") - $('td', row).eq(5).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% if has_num_cases %} - $('td', row).eq(6).addClass("column_name-num_cases") - $('td', row).eq(6).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% endif %} {% else %} {% if has_num_cases %} - $('td', row).eq(4).addClass("column_name-num_cases") - $('td', row).eq(4).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% endif %} {% endif %} - {% if sample_groups[0].attributes|length > 0 %} - {% for attribute in sample_groups[0].attributes|sort() %} - $('td', row).eq(attribute_start_pos + {{ loop.index }}).addClass("column_name-{{ sample_groups[0].attributes[attribute].name }}") - $('td', row).eq(attribute_start_pos + {{ loop.index }}).attr("style", "text-align: {{ sample_groups[0].attributes[attribute].alignment }}; padding-top: 2px; padding-bottom: 0px;") - {% endfor %} - {% endif %} - }, - 'data': js_data['sample_lists'][0], - 'columns': [ - { - 'data': null, - 'orderDataType': "dom-checkbox", - 'searchable' : false, - 'render': function(data, type, row, meta) { - return '<input type="checkbox" name="searchResult" style="min-height: 20px;" class="checkbox edit_sample_checkbox" value="">' - } - }, - { - 'title': "ID", - 'type': "natural", - 'searchable' : false, - 'data': "this_id" - }, - { - 'title': "Sample", - 'type': "natural", - 'data': null, - 'render': function(data, type, row, meta) { - return '<span class="edit_sample_sample_name">' + data.name + '</span>' - } - }, - { - 'title': "<div style='text-align: right;'>Value</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.value == null) { - return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="x" size=6 maxlength=6>' - } else { - return '<input type="text" data-value="' + data.value.toFixed(3) + '" data-qnorm="' + js_data['qnorm_values'][0][parseInt(data.this_id) - 1] + '" data-zscore="' + js_data['zscore_values'][0][parseInt(data.this_id) - 1] + '" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="' + data.value.toFixed(3) + '" size=6 maxlength=6>' - } - } - }{% if sample_groups[0].se_exists %}, - { - 'bSortable': false, - 'type': "natural", - 'data': null, - 'searchable' : false, - 'render': function(data, type, row, meta) { - return '±' - } - }, - { - 'title': "<div style='text-align: right;'>SE</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.variance == null) { - return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="x" size=6 maxlength=6>' - } else { - return '<input type="text" data-value="' + data.variance.toFixed(3) + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="' + data.variance.toFixed(3) + '" size=6 maxlength=6>' - } - } - }{% endif %}{% if has_num_cases %}, - { - 'title': "<div style='text-align: right;'>N</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.num_cases == null || data.num_cases == undefined) { - return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="x" size=4 maxlength=4>' - } else { - return '<input type="text" data-value="' + data.num_cases + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="' + data.num_cases + '" size=4 maxlength=4>' - } - } - }{% endif %}{% if sample_groups[0].attributes|length > 0 %}{% for attribute in sample_groups[0].attributes|sort() %}, - { - 'title': "<div style='text-align: {{ sample_groups[0].attributes[attribute].alignment }}'>{{ sample_groups[0].attributes[attribute].name }}</div>", - 'type': "natural", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.extra_attributes['{{ sample_groups[0].attributes[attribute].name }}'] != null && data.extra_attributes['{{ sample_groups[0].attributes[attribute].name }}'] != undefined){ - return data.extra_attributes['{{ sample_groups[0].attributes[attribute].name }}'] - } else { - return "" - } - } - }{% endfor %}{% endif %} - ], - 'order': [[1, "asc"]], - 'sDom': "Ztr", - 'autoWidth': true, - 'orderClasses': true, - "scrollY": "50vh", - 'scroller': true, - 'scrollCollapse': true - } ); - primary_table.on( 'order.dt search.dt draw.dt', function () { primary_table.column(1, {search:'applied', order:'applied'}).nodes().each( function (cell, i) { cell.innerHTML = i+1; @@ -370,139 +221,6 @@ } ); {% if sample_groups|length != 1 %} - var other_table = $('#samples_other').DataTable( { - 'initComplete': function(settings, json) { - $('.edit_sample_value').change(function() { - edit_data_change(); - }); - }, - 'createdRow': function ( row, data, index ) { - $(row).attr('id', "Other_" + data.this_id) - $(row).addClass("value_se"); - if (data.outlier) { - $(row).addClass("outlier"); - } - $('td', row).eq(0).attr("align", "center"); - $('td', row).eq(0).attr("style", "padding: 2px 0px 0px 2px;"); - $('td', row).eq(1).addClass("column_name-Index") - $('td', row).eq(1).attr("align", "right"); - $('td', row).eq(1).attr("style", "padding: 2px 4px 0px 2px;"); - $('td', row).eq(2).addClass("column_name-Sample") - $('td', row).eq(3).addClass("column_name-Value") - $('td', row).eq(3).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% if sample_groups[1].se_exists %} - $('td', row).eq(4).attr("align", "center"); - $('td', row).eq(4).attr("style", "padding-left: 2px; padding-right: 2px;"); - $('td', row).eq(5).addClass("column_name-SE") - $('td', row).eq(5).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% if has_num_cases %} - $('td', row).eq(6).addClass("column_name-num_cases") - $('td', row).eq(6).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% endif %} {% else %} {% if has_num_cases %} - $('td', row).eq(4).addClass("column_name-num_cases") - $('td', row).eq(4).attr("style", "text-align: right; padding-top: 2px; padding-bottom: 0px;"); - {% endif %} {% endif %} - {% if sample_groups[1].attributes|length > 0 %} - {% for attribute in sample_groups[1].attributes|sort() %} - $('td', row).eq(attribute_start_pos + {{ loop.index }}).addClass("column_name-{{ sample_groups[1].attributes[attribute].name }}") - $('td', row).eq(attribute_start_pos + {{ loop.index }}).attr("style", "text-align: {{ sample_groups[1].attributes[attribute].alignment }}; padding-top: 2px; padding-bottom: 0px;") - {% endfor %} - {% endif %} - }, - 'data': js_data['sample_lists'][1], - 'columns': [ - { - 'data': null, - 'orderDataType': "dom-checkbox", - 'searchable' : false, - 'render': function(data, type, row, meta) { - return '<input type="checkbox" name="searchResult" style="min-height: 20px;" class="checkbox edit_sample_checkbox" value="">' - } - }, - { - 'title': "ID", - 'type': "natural", - 'data': "this_id", - 'searchable' : false - }, - { - 'title': "Sample", - 'type': "natural", - 'data': null, - 'render': function(data, type, row, meta) { - return '<span class="edit_sample_sample_name">' + data.name + '</span>' - } - }, - { - 'title': "<div style='text-align: right;'>Value</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.value == null) { - return '<input type="text" data-value="x" data-qnorm="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="x" size=6 maxlength=6>' - } else { - return '<input type="text" data-value="' + data.value.toFixed(3) + '" data-qnorm="' + js_data['qnorm_values'][1][parseInt(data.this_id)] + '" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="' + data.value.toFixed(3) + '" size=6 maxlength=6>' - } - } - }{% if sample_groups[1].se_exists %}, - { - 'bSortable': false, - 'type': "natural", - 'data': null, - 'searchable' : false, - 'render': function(data, type, row, meta) { - return '±' - } - }, - { - 'title': "<div style='text-align: right;'>SE</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.variance == null) { - return '<input type="text" data-value="x" data-qnorm="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="x" size=6 maxlength=6>' - } else { - return '<input type="text" data-value="' + data.variance.toFixed(3) + '" data-qnorm="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_se" value="' + data.variance.toFixed(3) + '" size=6 maxlength=6>' - } - } - }{% endif %}{% if has_num_cases %}, - { - 'title': "<div style='text-align: right;'>N</div>", - 'orderDataType': "dom-input", - 'type': "cust-txt", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.num_cases == null) { - return '<input type="text" data-value="x" data-qnorm="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="x" size=4 maxlength=4>' - } else { - return '<input type="text" data-value="' + data.num_cases + '" data-qnorm="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_num_cases" value="' + data.num_cases + '" size=4 maxlength=4>' - } - } - }{% endif %}{% if sample_groups[1].attributes|length > 0 %}{% for attribute in sample_groups[1].attributes|sort() %}, - { - 'title': "<div style='text-align: {{ sample_groups[1].attributes[attribute].alignment }}'>{{ sample_groups[1].attributes[attribute].name }}</div>", - 'type': "natural", - 'data': null, - 'render': function(data, type, row, meta) { - if (data.extra_attributes['{{ sample_groups[1].attributes[attribute].name }}'] != null && data.extra_attributes['{{ sample_groups[1].attributes[attribute].name }}'] != undefined){ - return data.extra_attributes['{{ sample_groups[1].attributes[attribute].name }}'] - } else { - return "" - } - } - }{% endfor %}{% endif %} - ], - 'order': [[1, "asc"]], - 'sDom': "Ztr", - 'autoWidth': true, - 'orderClasses': true, - "scrollY": "50vh", - 'scroller': true, - 'scrollCollapse': true - } ); - $('#other_searchbox').on( 'keyup', function () { other_table.search($(this).val()).draw(); } ); |