diff options
Diffstat (limited to 'wqflask')
299 files changed, 28000 insertions, 6155 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 50ef8f57..9b0a3dcc 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -22,10 +22,14 @@ from __future__ import absolute_import, print_function, division import os +import math +import string +import collections -from flask import Flask, g +import json +import itertools -from htmlgen import HTMLgen2 as HT +from flask import Flask, g import reaper @@ -33,6 +37,7 @@ from base import webqtlConfig from base import species from dbFunction import webqtlDatabaseFunction from utility import webqtlUtil +from utility.benchmark import Bench from MySQLdb import escape_string as escape from pprint import pformat as pf @@ -41,29 +46,95 @@ from pprint import pformat as pf DS_NAME_MAP = {} def create_dataset(dataset_name): - #cursor = db_conn.cursor() print("dataset_name:", dataset_name) query = """ SELECT DBType.Name FROM DBList, DBType - WHERE DBList.Name = '%s' and + WHERE DBList.Name = '{}' and DBType.Id = DBList.DBTypeId - """ % (escape(dataset_name)) - print("query is: ", pf(query)) + """.format(escape(dataset_name)) + #print("query is: ", pf(query)) dataset_type = g.db.execute(query).fetchone().Name #dataset_type = cursor.fetchone()[0] - print("[blubber] dataset_type:", pf(dataset_type)) + #print("[blubber] dataset_type:", pf(dataset_type)) dataset_ob = DS_NAME_MAP[dataset_type] #dataset_class = getattr(data_set, dataset_ob) - print("dataset_ob:", dataset_ob) - print("DS_NAME_MAP:", pf(DS_NAME_MAP)) + #print("dataset_ob:", dataset_ob) + #print("DS_NAME_MAP:", pf(DS_NAME_MAP)) dataset_class = globals()[dataset_ob] return dataset_class(dataset_name) +def mescape(*items): + """Multiple escape""" + escaped = [escape(item) for item in items] + print("escaped is:", escaped) + return escaped + + +class Markers(object): + """Todo: Build in cacheing so it saves us reading the same file more than once""" + def __init__(self, name): + json_data_fh = open(os.path.join(webqtlConfig.NEWGENODIR + name + '.json')) + self.markers = json.load(json_data_fh) + + def add_pvalues(self, p_values): + print("length of self.markers:", len(self.markers)) + print("length of p_values:", len(p_values)) + + # THIS IS only needed for the case when we are limiting the number of p-values calculated + if len(self.markers) < len(p_values): + self.markers = self.markers[:len(p_values)] + + for marker, p_value in itertools.izip(self.markers, p_values): + marker['p_value'] = p_value + print("p_value is:", marker['p_value']) + marker['lod_score'] = -math.log10(marker['p_value']) + #Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values + marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61 + + + + +class HumanMarkers(Markers): + + def __init__(self, name): + marker_data_fh = open(os.path.join(webqtlConfig.PYLMM_PATH + name + '.bim')) + self.markers = [] + for line in marker_data_fh: + splat = line.strip().split() + marker = {} + marker['chr'] = int(splat[0]) + marker['name'] = splat[1] + marker['Mb'] = float(splat[3]) / 1000000 + self.markers.append(marker) + + #print("markers is: ", pf(self.markers)) + + + def add_pvalues(self, p_values): + #for marker, p_value in itertools.izip(self.markers, p_values): + # if marker['Mb'] <= 0 and marker['chr'] == 0: + # continue + # marker['p_value'] = p_value + # print("p_value is:", marker['p_value']) + # marker['lod_score'] = -math.log10(marker['p_value']) + # #Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values + # marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61 + + super(HumanMarkers, self).add_pvalues(p_values) + + with Bench("deleting markers"): + markers = [] + for marker in self.markers: + if not marker['Mb'] <= 0 and not marker['chr'] == 0: + markers.append(marker) + self.markers = markers + + class DatasetGroup(object): """ @@ -79,22 +150,41 @@ class DatasetGroup(object): if self.name == 'BXD300': self.name = "BXD" + self.f1list = None + self.parlist = None + self.get_f1_parent_strains() + print("parents/f1s: {}:{}".format(self.parlist, self.f1list)) + self.species = webqtlDatabaseFunction.retrieve_species(self.name) self.incparentsf1 = False - self.f1list = None - self.parlist = None self.allsamples = None + + + def get_markers(self): + print("self.species is:", self.species) + if self.species == "human": + marker_class = HumanMarkers + else: + marker_class = Markers + self.markers = marker_class(self.name) + - #def read_genotype(self): - # self.read_genotype_file() - # - # if not self.genotype: # Didn'd succeed, so we try method 2 - # self.read_genotype_data() + def get_f1_parent_strains(self): + try: + # NL, 07/27/2010. ParInfo has been moved from webqtlForm.py to webqtlUtil.py; + f1, f12, maternal, paternal = webqtlUtil.ParInfo[self.name] + except KeyError: + f1 = f12 = maternal = paternal = None + + if f1 and f12: + self.f1list = [f1, f12] + if maternal and paternal: + self.parlist = [maternal, paternal] def read_genotype_file(self): - '''read genotype from .geno file instead of database''' + '''Read genotype from .geno file instead of database''' #if self.group == 'BXD300': # self.group = 'BXD' # @@ -104,38 +194,24 @@ class DatasetGroup(object): #genotype_2 is Dataset Object with parents and f1 (not for intercross) genotype_1 = reaper.Dataset() - + # reaper barfs on unicode filenames, so here we ensure it's a string full_filename = str(os.path.join(webqtlConfig.GENODIR, self.name + '.geno')) genotype_1.read(full_filename) - print("Got to after read") - - try: - # NL, 07/27/2010. ParInfo has been moved from webqtlForm.py to webqtlUtil.py; - f1, f12, maternal, paternal = webqtlUtil.ParInfo[self.name] - except KeyError: - f1 = f12 = maternal = paternal = None - - - if genotype_1.type == "group" and maternal and paternal: - genotype_2 = genotype_1.add(Mat=maternal, Pat=paternal) #, F1=_f1) + if genotype_1.type == "group" and self.parlist: + genotype_2 = genotype_1.add(Mat=self.parlist[0], Pat=self.parlist[1]) #, F1=_f1) else: genotype_2 = genotype_1 #determine default genotype object if self.incparentsf1 and genotype_1.type != "intercross": - self.genotype = genotype_2 + genotype = genotype_2 else: self.incparentsf1 = 0 - self.genotype = genotype_1 + genotype = genotype_1 - self.samplelist = list(self.genotype.prgy) - - if f1 and f12: - self.f1list = [f1, f12] - if maternal and paternal: - self.parlist = [maternal, paternal] + self.samplelist = list(genotype.prgy) class DataSet(object): @@ -160,9 +236,8 @@ class DataSet(object): self.group = DatasetGroup(self) # sets self.group and self.group_id and gets genotype self.species = species.TheSpecies(self) - - - + + def get_desc(self): """Gets overridden later, at least for Temp...used by trait's get_given_name""" return None @@ -227,11 +302,7 @@ class DataSet(object): #self.cursor.execute(query) #self.id, self.name, self.fullname, self.shortname = self.cursor.fetchone() - - - #def genHTML(self, Class='c0dd'): - # return HT.Href(text = HT.Span('%s Database' % self.fullname, Class= "fwb " + Class), - # url= webqtlConfig.INFOPAGEHREF % self.name,target="_blank") + class PhenotypeDataSet(DataSet): DS_NAME_MAP['Publish'] = 'PhenotypeDataSet' @@ -291,6 +362,19 @@ class PhenotypeDataSet(DataSet): # (Urgently?) Need to write this pass + def get_trait_list(self): + query = """ + select PublishXRef.Id + from PublishXRef, PublishFreeze + where PublishFreeze.InbredSetId=PublishXRef.InbredSetId + and PublishFreeze.Id = {} + """.format(escape(str(self.id))) + results = g.db.execute(query).fetchall() + trait_data = {} + for trait in results: + trait_data[trait[0]] = self.retrieve_sample_data(trait[0]) + return trait_data + def get_trait_info(self, trait_list, species = ''): for this_trait in trait_list: if not this_trait.haveinfo: @@ -301,7 +385,7 @@ class PhenotypeDataSet(DataSet): continue # for now if not webqtlUtil.hasAccessToConfidentialPhenotypeTrait(privilege=self.privilege, userName=self.userName, authorized_users=this_trait.authorized_users): description = this_trait.pre_publication_description - this_trait.description_display = description + this_trait.description_display = unicode(description, "utf8") if not this_trait.year.isdigit(): this_trait.pubmed_text = "N/A" @@ -359,7 +443,7 @@ class PhenotypeDataSet(DataSet): PublishFreeze.Id = %d AND PublishData.StrainId = Strain.Id Order BY Strain.Name - """ % (trait.name, self.id) + """ % (trait, self.id) results = g.db.execute(query).fetchall() return results @@ -399,6 +483,19 @@ class GenotypeDataSet(DataSet): def check_confidentiality(self): return geno_mrna_confidentiality(self) + + def get_trait_list(self): + query = """ + select Geno.Name + from Geno, GenoXRef + where GenoXRef.GenoId = Geno.Id + and GenoFreezeId = {} + """.format(escape(str(self.id))) + results = g.db.execute(query).fetchall() + trait_data = {} + for trait in results: + trait_data[trait[0]] = self.retrieve_sample_data(trait[0]) + return trait_data def get_trait_info(self, trait_list, species=None): for this_trait in trait_list: @@ -437,7 +534,7 @@ class GenotypeDataSet(DataSet): GenoData.StrainId = Strain.Id Order BY Strain.Name - """ % (webqtlDatabaseFunction.retrieve_species_id(self.group.name), trait.name, self.name) + """ % (webqtlDatabaseFunction.retrieve_species_id(self.group.name), trait, self.name) results = g.db.execute(query).fetchall() return results @@ -509,7 +606,95 @@ class MrnaAssayDataSet(DataSet): def check_confidentiality(self): return geno_mrna_confidentiality(self) + + def get_trait_list_1(self): + query = """ + select ProbeSet.Name + from ProbeSet, ProbeSetXRef + where ProbeSetXRef.ProbeSetId = ProbeSet.Id + and ProbeSetFreezeId = {} + """.format(escape(str(self.id))) + results = g.db.execute(query).fetchall() + print("After get_trait_list query") + trait_data = {} + for trait in results: + print("Retrieving sample_data for ", trait[0]) + trait_data[trait[0]] = self.retrieve_sample_data(trait[0]) + print("After retrieve_sample_data") + return trait_data + + def get_trait_data(self): + sample_ids = [] + for sample in self.group.samplelist: + query = """ + SELECT Strain.Id FROM Strain, Species + WHERE Strain.Name = '{}' + and Strain.SpeciesId=Species.Id + and Species.name = '{}' + """.format(*mescape(sample, self.group.species)) + this_id = g.db.execute(query).fetchone()[0] + sample_ids.append('%d' % this_id) + print("sample_ids size: ", len(sample_ids)) + + # MySQL limits the number of tables that can be used in a join to 61, + # so we break the sample ids into smaller chunks + chunk_count = 50 + n = len(sample_ids) / chunk_count + if len(sample_ids) % chunk_count: + n += 1 + print("n: ", n) + #XZ, 09/24/2008: build one temporary table that only contains the records associated with the input GeneId + #tempTable = None + #if GeneId and db.type == "ProbeSet": + # if method == "3": + # tempTable = self.getTempLiteratureTable(species=species, + # input_species_geneid=GeneId, + # returnNumber=returnNumber) + # + # if method == "4" or method == "5": + # tempTable = self.getTempTissueCorrTable(primaryTraitSymbol=GeneSymbol, + # TissueProbeSetFreezeId=tissueProbeSetFreezeId, + # method=method, + # returnNumber=returnNumber) + trait_sample_data = [] + for step in range(int(n)): + temp = [] + sample_ids_step = sample_ids[step*chunk_count:min(len(sample_ids), (step+1)*chunk_count)] + for item in sample_ids_step: + temp.append('T%s.value' % item) + query = "SELECT {}.Name,".format(escape(self.type)) + data_start_pos = 1 + query += string.join(temp, ', ') + query += ' FROM ({}, {}XRef, {}Freeze) '.format(*mescape(self.type, + self.type, + self.type)) + #XZ, 03/04/2009: Xiaodong changed Data to %sData and changed parameters from %(item,item, db.type,item,item) to %(db.type, item,item, db.type,item,item) + for item in sample_ids_step: + query += """ + left join {}Data as T{} on T{}.Id = {}XRef.DataId + and T{}.StrainId={}\n + """.format(*mescape(self.type, item, item, self.type, item, item)) + query += """ + WHERE {}XRef.{}FreezeId = {}Freeze.Id + and {}Freeze.Name = '{}' + and {}.Id = {}XRef.{}Id + order by {}.Id + """.format(*mescape(self.type, self.type, self.type, self.type, + self.name, self.type, self.type, self.type, self.type)) + print("query: ", query) + results = g.db.execute(query).fetchall() + trait_sample_data.append(results) + + trait_count = len(trait_sample_data[0]) + self.trait_data = collections.defaultdict(list) + # put all of the separate data together into a dictionary where the keys are + # trait names and values are lists of sample values + for j in range(trait_count): + trait_name = trait_sample_data[0][j][0] + for i in range(int(n)): + self.trait_data[trait_name] += trait_sample_data[i][j][data_start_pos:] + def get_trait_info(self, trait_list=None, species=''): # Note: setting trait_list to [] is probably not a great idea. @@ -550,8 +735,10 @@ class MrnaAssayDataSet(DataSet): trait_location_value = 1000000 if this_trait.chr and this_trait.mb: + print("this_trait.chr is:", this_trait.chr) + print("this_trait.mb is:", this_trait.mb) try: - trait_location_value = int(this_trait.chr)*1000 + this_trait.mb + trait_location_value = float(this_trait.chr)*1000 + float(this_trait.mb) except: if this_trait.chr.upper() == 'X': trait_location_value = 20*1000 + this_trait.mb @@ -633,9 +820,9 @@ class MrnaAssayDataSet(DataSet): ProbeSetFreeze.Name = %s """ % (escape(self.name), escape(self.dataset.name)) results = g.db.execute(query).fetchone() - return results[0] + def retrieve_sample_data(self, trait): query = """ SELECT @@ -652,7 +839,7 @@ class MrnaAssayDataSet(DataSet): ProbeSetData.StrainId = Strain.Id Order BY Strain.Name - """ % (escape(trait.name), escape(self.name)) + """ % (escape(trait), escape(self.name)) results = g.db.execute(query).fetchall() return results @@ -741,3 +928,4 @@ def geno_mrna_confidentiality(ob): if confidential: # Allow confidential data later NoConfindetialDataForYouTodaySorry + diff --git a/wqflask/base/generate_probesetfreeze_file.py b/wqflask/base/generate_probesetfreeze_file.py new file mode 100644 index 00000000..a0ff804b --- /dev/null +++ b/wqflask/base/generate_probesetfreeze_file.py @@ -0,0 +1,31 @@ +from __future__ import absolute_import, print_function, division +import os +import math + +import json +import itertools + +from flask import Flask, g + +from base import webqtlConfig +from dbFunction import webqtlDatabaseFunction +from utility import webqtlUtil + +from MySQLdb import escape_string as escape +from pprint import pformat as pf + + +query = """ select ProbeSet.Name + from ProbeSetXRef, + ProbeSetFreeze, + ProbeSet + where ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and + ProbeSetFreeze.Name = "EPFLMouseMuscleCDRMA1211" and + ProbeSetXRef.ProbeSetId = ProbeSet.Id; + """ + +markers = g.db.execute(query).fetchall() +print("markers: ", pf(markers)) + +if __name__ == '__main__': + main()
\ No newline at end of file diff --git a/wqflask/base/species.py b/wqflask/base/species.py index 9d4cac4c..191f4535 100644 --- a/wqflask/base/species.py +++ b/wqflask/base/species.py @@ -16,8 +16,7 @@ class TheSpecies(object): print("self.dataset is:", pf(self.dataset.__dict__)) self.chromosomes = Chromosomes(self.dataset) self.genome_mb_length = self.chromosomes.get_genome_mb_length() - - + #@property #def chromosomes(self): # chromosomes = [("All", -1)] @@ -31,7 +30,8 @@ class TheSpecies(object): # return chromosomes class IndChromosome(object): - def __init__(self, length): + def __init__(self, name, length): + self.name = name self.length = length @property @@ -50,7 +50,7 @@ class Chromosomes(object): results = g.db.execute(""" Select - Chr_Length.Name, Length from Chr_Length, InbredSet + Chr_Length.Name, Chr_Length.OrderId, Length from Chr_Length, InbredSet where Chr_Length.SpeciesId = InbredSet.SpeciesId AND InbredSet.Name = %s @@ -59,10 +59,10 @@ class Chromosomes(object): print("bike:", results) for item in results: - self.chromosomes[item.Name] = IndChromosome(item.Length) + self.chromosomes[item.OrderId] = IndChromosome(item.Name, item.Length) self.set_mb_graph_interval() - self.get_cm_length_list() + #self.get_cm_length_list() def set_mb_graph_interval(self): diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 241bf2ab..dde8b8d8 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -208,7 +208,7 @@ class GeneralTrait: # ''' % (self.cellid, self.name, self.dataset.name) # #else: - results = self.dataset.retrieve_sample_data(self) + results = self.dataset.retrieve_sample_data(self.name) # Todo: is this necessary? If not remove self.data.clear() @@ -302,7 +302,7 @@ class GeneralTrait: #XZ: assign SQL query result to trait attributes. for i, field in enumerate(self.dataset.display_fields): - setattr(self, field, traitInfo[i]) + setattr(self, field, str(traitInfo[i])) if self.dataset.type == 'Publish': self.confidential = 0 @@ -314,27 +314,27 @@ class GeneralTrait: #XZ, 05/26/2010: From time to time, this query get error message because some geneid values in database are not number. #XZ: So I have to test if geneid is number before execute the query. #XZ: The geneid values in database should be cleaned up. - try: - junk = float(self.geneid) - geneidIsNumber = 1 - except: - geneidIsNumber = 0 - - if geneidIsNumber: - query = """ - SELECT - HomologeneId - FROM - Homologene, Species, InbredSet - WHERE - Homologene.GeneId =%s AND - InbredSet.Name = '%s' AND - InbredSet.SpeciesId = Species.Id AND - Species.TaxonomyId = Homologene.TaxonomyId - """ % (escape(str(self.geneid)), escape(self.dataset.group.name)) - result = g.db.execute(query).fetchone() - else: - result = None + #try: + # float(self.geneid) + # geneidIsNumber = True + #except ValueError: + # geneidIsNumber = False + + #if geneidIsNumber: + query = """ + SELECT + HomologeneId + FROM + Homologene, Species, InbredSet + WHERE + Homologene.GeneId =%s AND + InbredSet.Name = '%s' AND + InbredSet.SpeciesId = Species.Id AND + Species.TaxonomyId = Homologene.TaxonomyId + """ % (escape(str(self.geneid)), escape(self.dataset.group.name)) + result = g.db.execute(query).fetchone() + #else: + # result = None if result: self.homologeneid = result[0] diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index 755595e0..a811c3cd 100755 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -52,19 +52,22 @@ ENSEMBLETRANSCRIPT_URL="http://useast.ensembl.org/Mus_musculus/Lucene/Details?sp SECUREDIR = GNROOT + 'secure/' COMMON_LIB = GNROOT + 'support/admin' HTMLPATH = GNROOT + 'web/' +PYLMM_PATH = '/home/zas1024/' +SNP_PATH = '/mnt/xvdf1/snps/' IMGDIR = HTMLPATH +'image/' IMAGESPATH = HTMLPATH + 'images/' UPLOADPATH = IMAGESPATH + 'upload/' -TMPDIR = '/tmp/' +TMPDIR = HTMLPATH + 'tmp/' GENODIR = HTMLPATH + 'genotypes/' +NEWGENODIR = HTMLPATH + 'new_genotypes/' GENO_ARCHIVE_DIR = GENODIR + 'archive/' TEXTDIR = HTMLPATH + 'ProbeSetFreeze_DataMatrix/' CMDLINEDIR = HTMLPATH + 'webqtl/cmdLine/' ChangableHtmlPath = GNROOT + 'web/' SITENAME = 'GN' -PORTADDR = "http://132.192.47.32" -BASEHREF = '<base href="http://132.192.47.32/">' +PORTADDR = "http://50.16.251.170" +BASEHREF = '<base href="http://50.16.251.170/">' INFOPAGEHREF = '/dbdoc/%s.html' GLOSSARYFILE = "/glossary.html" CGIDIR = '/webqtl/' #XZ: The variable name 'CGIDIR' should be changed to 'PYTHONDIR' diff --git a/wqflask/base/webqtlConfigLocal.py b/wqflask/base/webqtlConfigLocal.py index 84686234..abaeff93 100755 --- a/wqflask/base/webqtlConfigLocal.py +++ b/wqflask/base/webqtlConfigLocal.py @@ -2,18 +2,18 @@ # Environment Variables - private ######################################### -MYSQL_SERVER = 'localhost' -DB_NAME = 'db_webqtl_zas1024' +MYSQL_SERVER = 'gn.cazhbciu2y1i.us-east-1.rds.amazonaws.com' +DB_NAME = 'db_webqtl' DB_USER = 'webqtl' -DB_PASSWD = 'webqtl' +DB_PASSWD = 'f2ZypIflRM' -MYSQL_UPDSERVER = 'localhost' -DB_UPDNAME = 'db_webqtl_zas1024' +MYSQL_UPDSERVER = 'gn.cazhbciu2y1i.us-east-1.rds.amazonaws.com' +DB_UPDNAME = 'db_webqtl' DB_UPDUSER = 'webqtl' -DB_UPDPASSWD = 'webqtl' +DB_UPDPASSWD = 'f2ZypIflRM' -GNROOT = '/home/zas1024/gn/' -ROOT_URL = 'http://alexandria.uthsc.edu:91/' +GNROOT = '/home/zas1024/gene/' +ROOT_URL = 'http://50.16.251.170' PythonPath = '/usr/bin/python' PIDDLE_FONT_PATH = '/usr/lib/python2.4/site-packages/piddle/truetypefonts/' diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py index 1811ccfd..96f7f1a5 100644 --- a/wqflask/cfg/default_settings.py +++ b/wqflask/cfg/default_settings.py @@ -1,5 +1,15 @@ LOGFILE = """/tmp/flask_gn_log""" +SERVER_PORT = 5000 + #This is needed because Flask turns key errors into a -#400 bad request response with no exception/log +#400 bad request response with no exception/log TRAP_BAD_REQUEST_ERRORS = True + +# http://pythonhosted.org/Flask-Security/configuration.html +SECURITY_CONFIRMABLE = True +SECURITY_TRACKABLE = True +SECURITY_REGISTERABLE = True +SECURITY_RECOVERABLE = True + +SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" diff --git a/wqflask/cfg/zach_settings.py b/wqflask/cfg/zach_settings.py deleted file mode 100644 index 8d3bf4ab..00000000 --- a/wqflask/cfg/zach_settings.py +++ /dev/null @@ -1,5 +0,0 @@ -LOGFILE = """/tmp/flask_gn_log""" - -TRAP_BAD_REQUEST_ERRORS = True - -DB_URI = """mysql://webqtl:webqtl@localhost/db_webqtl_zas1024"""
\ No newline at end of file diff --git a/wqflask/flask_security/__init__.py b/wqflask/flask_security/__init__.py new file mode 100644 index 00000000..297033c9 --- /dev/null +++ b/wqflask/flask_security/__init__.py @@ -0,0 +1,25 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security + ~~~~~~~~~~~~~~~~~~ + + Flask-Security is a Flask extension that aims to add quick and simple + security via Flask-Login, Flask-Principal, Flask-WTF, and passlib. + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +__version__ = '1.6.0' + +print "using internal flask security" + +from .core import Security, RoleMixin, UserMixin, AnonymousUser, current_user +from .datastore import SQLAlchemyUserDatastore, MongoEngineUserDatastore, PeeweeUserDatastore +from .decorators import auth_token_required, http_auth_required, \ + login_required, roles_accepted, roles_required +from .forms import ForgotPasswordForm, LoginForm, RegisterForm, \ + ResetPasswordForm, PasswordlessLoginForm, ConfirmRegisterForm +from .signals import confirm_instructions_sent, password_reset, \ + reset_password_instructions_sent, user_confirmed, user_registered +from .utils import login_user, logout_user, url_for_security diff --git a/wqflask/flask_security/changeable.py b/wqflask/flask_security/changeable.py new file mode 100644 index 00000000..4447b655 --- /dev/null +++ b/wqflask/flask_security/changeable.py @@ -0,0 +1,45 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.changeable + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security recoverable module + + :copyright: (c) 2012 by Matt Wright. + :author: Eskil Heyn Olsen + :license: MIT, see LICENSE for more details. +""" + +from flask import current_app as app, request +from werkzeug.local import LocalProxy + +from .signals import password_changed +from .utils import send_mail, encrypt_password, url_for_security, \ + config_value + + +# Convenient references +_security = LocalProxy(lambda: app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def send_password_changed_notice(user): + """Sends the password changed notice email for the specified user. + + :param user: The user to send the notice to + """ + send_mail(config_value('EMAIL_SUBJECT_PASSWORD_CHANGE_NOTICE'), user.email, + 'change_notice', user=user) + + +def change_user_password(user, password): + """Change the specified user's password + + :param user: The user to change_password + :param password: The unencrypted new password + """ + user.password = encrypt_password(password) + _datastore.put(user) + send_password_changed_notice(user) + password_changed.send(user, app=app._get_current_object()) diff --git a/wqflask/flask_security/confirmable.py b/wqflask/flask_security/confirmable.py new file mode 100644 index 00000000..a7caf6cd --- /dev/null +++ b/wqflask/flask_security/confirmable.py @@ -0,0 +1,83 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.confirmable + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security confirmable module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from datetime import datetime + +from flask import current_app as app, request +from werkzeug.local import LocalProxy + +from .utils import send_mail, md5, url_for_security, get_token_status,\ + config_value +from .signals import user_confirmed, confirm_instructions_sent + + +# Convenient references +_security = LocalProxy(lambda: app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def generate_confirmation_link(user): + token = generate_confirmation_token(user) + url = url_for_security('confirm_email', token=token) + return request.url_root[:-1] + url, token + + +def send_confirmation_instructions(user): + """Sends the confirmation instructions email for the specified user. + + :param user: The user to send the instructions to + :param token: The confirmation token + """ + + confirmation_link, token = generate_confirmation_link(user) + + send_mail(config_value('EMAIL_SUBJECT_CONFIRM'), user.email, + 'confirmation_instructions', user=user, + confirmation_link=confirmation_link) + + confirm_instructions_sent.send(user, app=app._get_current_object()) + return token + + +def generate_confirmation_token(user): + """Generates a unique confirmation token for the specified user. + + :param user: The user to work with + """ + data = [str(user.id), md5(user.email)] + return _security.confirm_serializer.dumps(data) + + +def requires_confirmation(user): + """Returns `True` if the user requires confirmation.""" + return _security.confirmable and user.confirmed_at == None + + +def confirm_email_token_status(token): + """Returns the expired status, invalid status, and user of a confirmation + token. For example:: + + expired, invalid, user = confirm_email_token_status('...') + + :param token: The confirmation token + """ + return get_token_status(token, 'confirm', 'CONFIRM_EMAIL') + + +def confirm_user(user): + """Confirms the specified user + + :param user: The user to confirm + """ + user.confirmed_at = datetime.utcnow() + _datastore.put(user) + user_confirmed.send(user, app=app._get_current_object()) diff --git a/wqflask/flask_security/core.py b/wqflask/flask_security/core.py new file mode 100644 index 00000000..d794fad5 --- /dev/null +++ b/wqflask/flask_security/core.py @@ -0,0 +1,381 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.core + ~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security core module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from flask import current_app +from flask.ext.login import AnonymousUser as AnonymousUserBase, \ + UserMixin as BaseUserMixin, LoginManager, current_user +from flask.ext.principal import Principal, RoleNeed, UserNeed, Identity, \ + identity_loaded +from itsdangerous import URLSafeTimedSerializer +from passlib.context import CryptContext +from werkzeug.datastructures import ImmutableList +from werkzeug.local import LocalProxy + +from .utils import config_value as cv, get_config, md5, url_for_security +from .views import create_blueprint +from .forms import LoginForm, ConfirmRegisterForm, RegisterForm, \ + ForgotPasswordForm, ChangePasswordForm, ResetPasswordForm, \ + SendConfirmationForm, PasswordlessLoginForm + +# Convenient references +_security = LocalProxy(lambda: current_app.extensions['security']) + + +#: Default Flask-Security configuration +_default_config = { + 'BLUEPRINT_NAME': 'security', + 'URL_PREFIX': None, + 'SUBDOMAIN': None, + 'FLASH_MESSAGES': True, + 'PASSWORD_HASH': 'plaintext', + 'PASSWORD_SALT': None, + 'LOGIN_URL': '/login', + 'LOGOUT_URL': '/logout', + 'REGISTER_URL': '/register', + 'RESET_URL': '/reset', + 'CHANGE_URL': '/change', + 'CONFIRM_URL': '/confirm', + 'POST_LOGIN_VIEW': '/', + 'POST_LOGOUT_VIEW': '/', + 'CONFIRM_ERROR_VIEW': None, + 'POST_REGISTER_VIEW': None, + 'POST_CONFIRM_VIEW': None, + 'POST_RESET_VIEW': None, + 'POST_CHANGE_VIEW': None, + 'UNAUTHORIZED_VIEW': None, + 'FORGOT_PASSWORD_TEMPLATE': 'security/forgot_password.html', + 'LOGIN_USER_TEMPLATE': 'security/login_user.html', + 'REGISTER_USER_TEMPLATE': 'security/register_user.html', + 'RESET_PASSWORD_TEMPLATE': 'security/reset_password.html', + 'SEND_CONFIRMATION_TEMPLATE': 'security/send_confirmation.html', + 'SEND_LOGIN_TEMPLATE': 'security/send_login.html', + 'CONFIRMABLE': False, + 'REGISTERABLE': False, + 'RECOVERABLE': False, + 'TRACKABLE': False, + 'PASSWORDLESS': False, + 'CHANGEABLE': False, + 'SEND_REGISTER_EMAIL': True, + 'LOGIN_WITHIN': '1 days', + 'CONFIRM_EMAIL_WITHIN': '5 days', + 'RESET_PASSWORD_WITHIN': '5 days', + 'LOGIN_WITHOUT_CONFIRMATION': False, + 'EMAIL_SENDER': 'no-reply@localhost', + 'TOKEN_AUTHENTICATION_KEY': 'auth_token', + 'TOKEN_AUTHENTICATION_HEADER': 'Authentication-Token', + 'CONFIRM_SALT': 'confirm-salt', + 'RESET_SALT': 'reset-salt', + 'LOGIN_SALT': 'login-salt', + 'CHANGE_SALT': 'change-salt', + 'REMEMBER_SALT': 'remember-salt', + 'DEFAULT_HTTP_AUTH_REALM': 'Login Required', + 'EMAIL_SUBJECT_REGISTER': 'Welcome', + 'EMAIL_SUBJECT_CONFIRM': 'Please confirm your email', + 'EMAIL_SUBJECT_PASSWORDLESS': 'Login instructions', + 'EMAIL_SUBJECT_PASSWORD_NOTICE': 'Your password has been reset', + 'EMAIL_SUBJECT_PASSWORD_CHANGE_NOTICE': 'Your password has been changed', + 'EMAIL_SUBJECT_PASSWORD_RESET': 'Password reset instructions' +} + +#: Default Flask-Security messages +_default_messages = { + 'UNAUTHORIZED': ('You do not have permission to view this resource.', 'error'), + 'CONFIRM_REGISTRATION': ('Thank you. Confirmation instructions have been sent to %(email)s.', 'success'), + 'EMAIL_CONFIRMED': ('Thank you. Your email has been confirmed.', 'success'), + 'ALREADY_CONFIRMED': ('Your email has already been confirmed.', 'info'), + 'INVALID_CONFIRMATION_TOKEN': ('Invalid confirmation token.', 'error'), + 'EMAIL_ALREADY_ASSOCIATED': ('%(email)s is already associated with an account.', 'error'), + 'PASSWORD_MISMATCH': ('Password does not match', 'error'), + 'RETYPE_PASSWORD_MISMATCH': ('Passwords do not match', 'error'), + 'INVALID_REDIRECT': ('Redirections outside the domain are forbidden', 'error'), + 'PASSWORD_RESET_REQUEST': ('Instructions to reset your password have been sent to %(email)s.', 'info'), + 'PASSWORD_RESET_EXPIRED': ('You did not reset your password within %(within)s. New instructions have been sent to %(email)s.', 'error'), + 'INVALID_RESET_PASSWORD_TOKEN': ('Invalid reset password token.', 'error'), + 'CONFIRMATION_REQUIRED': ('Email requires confirmation.', 'error'), + 'CONFIRMATION_REQUEST': ('Confirmation instructions have been sent to %(email)s.', 'info'), + 'CONFIRMATION_EXPIRED': ('You did not confirm your email within %(within)s. New instructions to confirm your email have been sent to %(email)s.', 'error'), + 'LOGIN_EXPIRED': ('You did not login within %(within)s. New instructions to login have been sent to %(email)s.', 'error'), + 'LOGIN_EMAIL_SENT': ('Instructions to login have been sent to %(email)s.', 'success'), + 'INVALID_LOGIN_TOKEN': ('Invalid login token.', 'error'), + 'DISABLED_ACCOUNT': ('Account is disabled.', 'error'), + 'EMAIL_NOT_PROVIDED': ('Email not provided', 'error'), + 'INVALID_EMAIL_ADDRESS': ('Invalid email address', 'error'), + 'PASSWORD_NOT_PROVIDED': ('Password not provided', 'error'), + 'USER_DOES_NOT_EXIST': ('Specified user does not exist', 'error'), + 'INVALID_PASSWORD': ('Invalid password', 'error'), + 'PASSWORDLESS_LOGIN_SUCCESSFUL': ('You have successfuly logged in.', 'success'), + 'PASSWORD_RESET': ('You successfully reset your password and you have been logged in automatically.', 'success'), + 'PASSWORD_CHANGE': ('You successfully changed your password.', 'success'), + 'LOGIN': ('Please log in to access this page.', 'info'), + 'REFRESH': ('Please reauthenticate to access this page.', 'info'), +} + +_allowed_password_hash_schemes = [ + 'bcrypt', + 'des_crypt', + 'pbkdf2_sha256', + 'pbkdf2_sha512', + 'sha256_crypt', + 'sha512_crypt', + # And always last one... + 'plaintext' +] + +_default_forms = { + 'login_form': LoginForm, + 'confirm_register_form': ConfirmRegisterForm, + 'register_form': RegisterForm, + 'forgot_password_form': ForgotPasswordForm, + 'reset_password_form': ResetPasswordForm, + 'change_password_form': ChangePasswordForm, + 'send_confirmation_form': SendConfirmationForm, + 'passwordless_login_form': PasswordlessLoginForm, +} + + +def _user_loader(user_id): + return _security.datastore.find_user(id=user_id) + + +def _token_loader(token): + try: + data = _security.remember_token_serializer.loads(token) + user = _security.datastore.find_user(id=data[0]) + if user and md5(user.password) == data[1]: + return user + except: + pass + + return None + + +def _identity_loader(): + if not isinstance(current_user._get_current_object(), AnonymousUser): + identity = Identity(current_user.id) + return identity + + +def _on_identity_loaded(sender, identity): + if hasattr(current_user, 'id'): + identity.provides.add(UserNeed(current_user.id)) + + for role in current_user.roles: + identity.provides.add(RoleNeed(role.name)) + + identity.user = current_user + + +def _get_login_manager(app): + lm = LoginManager() + lm.anonymous_user = AnonymousUser + lm.login_view = '%s.login' % cv('BLUEPRINT_NAME', app=app) + lm.user_loader(_user_loader) + lm.token_loader(_token_loader) + lm.login_message, lm.login_message_category = cv('MSG_LOGIN', app=app) + lm.needs_refresh_message, lm.needs_refresh_message_category = cv('MSG_REFRESH', app=app) + lm.init_app(app) + return lm + + +def _get_principal(app): + p = Principal(app, use_sessions=False) + p.identity_loader(_identity_loader) + return p + + +def _get_pwd_context(app): + pw_hash = cv('PASSWORD_HASH', app=app) + if pw_hash not in _allowed_password_hash_schemes: + allowed = ', '.join(_allowed_password_hash_schemes[:-1]) + ' and ' + _allowed_password_hash_schemes[-1] + raise ValueError("Invalid hash scheme %r. Allowed values are %s" % (pw_hash, allowed)) + return CryptContext(schemes=_allowed_password_hash_schemes, default=pw_hash) + + +def _get_serializer(app, name): + secret_key = app.config.get('SECRET_KEY') + salt = app.config.get('SECURITY_%s_SALT' % name.upper()) + return URLSafeTimedSerializer(secret_key=secret_key, salt=salt) + + +def _get_state(app, datastore, **kwargs): + for key, value in get_config(app).items(): + kwargs[key.lower()] = value + + kwargs.update(dict( + app=app, + datastore=datastore, + login_manager=_get_login_manager(app), + principal=_get_principal(app), + pwd_context=_get_pwd_context(app), + remember_token_serializer=_get_serializer(app, 'remember'), + login_serializer=_get_serializer(app, 'login'), + reset_serializer=_get_serializer(app, 'reset'), + confirm_serializer=_get_serializer(app, 'confirm'), + _context_processors={}, + _send_mail_task=None + )) + + for key, value in _default_forms.items(): + if key not in kwargs or not kwargs[key]: + kwargs[key] = value + + return _SecurityState(**kwargs) + + +def _context_processor(): + return dict(url_for_security=url_for_security, security=_security) + + +class RoleMixin(object): + """Mixin for `Role` model definitions""" + def __eq__(self, other): + return (self.name == other or \ + self.name == getattr(other, 'name', None)) + + def __ne__(self, other): + return (self.name != other and + self.name != getattr(other, 'name', None)) + + +class UserMixin(BaseUserMixin): + """Mixin for `User` model definitions""" + + def is_active(self): + """Returns `True` if the user is active.""" + return self.active + + def get_auth_token(self): + """Returns the user's authentication token.""" + data = [str(self.id), md5(self.password)] + return _security.remember_token_serializer.dumps(data) + + def has_role(self, role): + """Returns `True` if the user identifies with the specified role. + + :param role: A role name or `Role` instance""" + return role in self.roles + + +class AnonymousUser(AnonymousUserBase): + """AnonymousUser definition""" + + def __init__(self): + super(AnonymousUser, self).__init__() + self.roles = ImmutableList() + + def has_role(self, *args): + """Returns `False`""" + return False + + +class _SecurityState(object): + + def __init__(self, **kwargs): + for key, value in kwargs.items(): + setattr(self, key.lower(), value) + + def _add_ctx_processor(self, endpoint, fn): + group = self._context_processors.setdefault(endpoint, []) + fn not in group and group.append(fn) + + def _run_ctx_processor(self, endpoint): + rv, fns = {}, [] + for g in [None, endpoint]: + for fn in self._context_processors.setdefault(g, []): + rv.update(fn()) + return rv + + def context_processor(self, fn): + self._add_ctx_processor(None, fn) + + def forgot_password_context_processor(self, fn): + self._add_ctx_processor('forgot_password', fn) + + def login_context_processor(self, fn): + self._add_ctx_processor('login', fn) + + def register_context_processor(self, fn): + self._add_ctx_processor('register', fn) + + def reset_password_context_processor(self, fn): + self._add_ctx_processor('reset_password', fn) + + def change_password_context_processor(self, fn): + self._add_ctx_processor('change_password', fn) + + def send_confirmation_context_processor(self, fn): + self._add_ctx_processor('send_confirmation', fn) + + def send_login_context_processor(self, fn): + self._add_ctx_processor('send_login', fn) + + def mail_context_processor(self, fn): + self._add_ctx_processor('mail', fn) + + def send_mail_task(self, fn): + self._send_mail_task = fn + + +class Security(object): + """The :class:`Security` class initializes the Flask-Security extension. + + :param app: The application. + :param datastore: An instance of a user datastore. + """ + def __init__(self, app=None, datastore=None, **kwargs): + self.app = app + self.datastore = datastore + + if app is not None and datastore is not None: + self._state = self.init_app(app, datastore, **kwargs) + + def init_app(self, app, datastore=None, register_blueprint=True, + login_form=None, confirm_register_form=None, + register_form=None, forgot_password_form=None, + reset_password_form=None, change_password_form=None, + send_confirmation_form=None, passwordless_login_form=None): + """Initializes the Flask-Security extension for the specified + application and datastore implentation. + + :param app: The application. + :param datastore: An instance of a user datastore. + :param register_blueprint: to register the Security blueprint or not. + """ + datastore = datastore or self.datastore + + for key, value in _default_config.items(): + app.config.setdefault('SECURITY_' + key, value) + + for key, value in _default_messages.items(): + app.config.setdefault('SECURITY_MSG_' + key, value) + + identity_loaded.connect_via(app)(_on_identity_loaded) + + state = _get_state(app, datastore, + login_form=login_form, + confirm_register_form=confirm_register_form, + register_form=register_form, + forgot_password_form=forgot_password_form, + reset_password_form=reset_password_form, + change_password_form=change_password_form, + send_confirmation_form=send_confirmation_form, + passwordless_login_form=passwordless_login_form) + + if register_blueprint: + app.register_blueprint(create_blueprint(state, __name__)) + app.context_processor(_context_processor) + + app.extensions['security'] = state + + return state + + def __getattr__(self, name): + return getattr(self._state, name, None) diff --git a/wqflask/flask_security/datastore.py b/wqflask/flask_security/datastore.py new file mode 100644 index 00000000..f8c7218d --- /dev/null +++ b/wqflask/flask_security/datastore.py @@ -0,0 +1,260 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.datastore + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + This module contains an user datastore classes. + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +class Datastore(object): + def __init__(self, db): + self.db = db + + def commit(self): + pass + + def put(self, model): + raise NotImplementedError + + def delete(self, model): + raise NotImplementedError + + +class SQLAlchemyDatastore(Datastore): + def commit(self): + self.db.session.commit() + + def put(self, model): + self.db.session.add(model) + return model + + def delete(self, model): + self.db.session.delete(model) + + +class MongoEngineDatastore(Datastore): + def put(self, model): + model.save() + return model + + def delete(self, model): + model.delete() + + +class PeeweeDatastore(Datastore): + def put(self, model): + model.save() + return model + + def delete(self, model): + model.delete_instance() + + +class UserDatastore(object): + """Abstracted user datastore. + + :param user_model: A user model class definition + :param role_model: A role model class definition + """ + + def __init__(self, user_model, role_model): + self.user_model = user_model + self.role_model = role_model + + def _prepare_role_modify_args(self, user, role): + if isinstance(user, basestring): + user = self.find_user(email=user) + if isinstance(role, basestring): + role = self.find_role(role) + return user, role + + def _prepare_create_user_args(self, **kwargs): + kwargs.setdefault('active', True) + roles = kwargs.get('roles', []) + for i, role in enumerate(roles): + rn = role.name if isinstance(role, self.role_model) else role + # see if the role exists + roles[i] = self.find_role(rn) + kwargs['roles'] = roles + return kwargs + + def find_user(self, *args, **kwargs): + """Returns a user matching the provided parameters.""" + raise NotImplementedError + + def find_role(self, *args, **kwargs): + """Returns a role matching the provided name.""" + raise NotImplementedError + + def add_role_to_user(self, user, role): + """Adds a role tp a user + + :param user: The user to manipulate + :param role: The role to add to the user + """ + rv = False + user, role = self._prepare_role_modify_args(user, role) + if role not in user.roles: + rv = True + user.roles.append(role) + return rv + + def remove_role_from_user(self, user, role): + """Removes a role from a user + + :param user: The user to manipulate + :param role: The role to remove from the user + """ + rv = False + user, role = self._prepare_role_modify_args(user, role) + if role in user.roles: + rv = True + user.roles.remove(role) + return rv + + def toggle_active(self, user): + """Toggles a user's active status. Always returns True.""" + user.active = not user.active + return True + + def deactivate_user(self, user): + """Deactivates a specified user. Returns `True` if a change was made. + + :param user: The user to deactivate + """ + if user.active: + user.active = False + return True + return False + + def activate_user(self, user): + """Activates a specified user. Returns `True` if a change was made. + + :param user: The user to activate + """ + if not user.active: + user.active = True + return True + return False + + def create_role(self, **kwargs): + """Creates and returns a new role from the given parameters.""" + + role = self.role_model(**kwargs) + return self.put(role) + + def find_or_create_role(self, name, **kwargs): + """Returns a role matching the given name or creates it with any + additionally provided parameters + """ + kwargs["name"] = name + return self.find_role(name) or self.create_role(**kwargs) + + def create_user(self, **kwargs): + """Creates and returns a new user from the given parameters.""" + + user = self.user_model(**self._prepare_create_user_args(**kwargs)) + return self.put(user) + + def delete_user(self, user): + """Delete the specified user + + :param user: The user to delete + """ + self.delete(user) + + +class SQLAlchemyUserDatastore(SQLAlchemyDatastore, UserDatastore): + """A SQLAlchemy datastore implementation for Flask-Security that assumes the + use of the Flask-SQLAlchemy extension. + """ + def __init__(self, db, user_model, role_model): + SQLAlchemyDatastore.__init__(self, db) + UserDatastore.__init__(self, user_model, role_model) + + def find_user(self, **kwargs): + return self.user_model.query.filter_by(**kwargs).first() + + def find_role(self, role): + return self.role_model.query.filter_by(name=role).first() + + +class MongoEngineUserDatastore(MongoEngineDatastore, UserDatastore): + """A MongoEngine datastore implementation for Flask-Security that assumes + the use of the Flask-MongoEngine extension. + """ + def __init__(self, db, user_model, role_model): + MongoEngineDatastore.__init__(self, db) + UserDatastore.__init__(self, user_model, role_model) + + def find_user(self, **kwargs): + return self.user_model.objects(**kwargs).first() + + def find_role(self, role): + return self.role_model.objects(name=role).first() + + +class PeeweeUserDatastore(PeeweeDatastore, UserDatastore): + """A PeeweeD datastore implementation for Flask-Security that assumes + the use of the Flask-Peewee extension. + + :param user_model: A user model class definition + :param role_model: A role model class definition + :param role_link: A model implementing the many-to-many user-role relation + """ + def __init__(self, db, user_model, role_model, role_link): + PeeweeDatastore.__init__(self, db) + UserDatastore.__init__(self, user_model, role_model) + self.UserRole = role_link + + def find_user(self, **kwargs): + try: + return self.user_model.filter(**kwargs).get() + except self.user_model.DoesNotExist: + return None + + def find_role(self, role): + try: + return self.role_model.filter(name=role).get() + except self.role_model.DoesNotExist: + return None + + def create_user(self, **kwargs): + """Creates and returns a new user from the given parameters.""" + roles = kwargs.pop('roles', []) + user = self.user_model(**self._prepare_create_user_args(**kwargs)) + user = self.put(user) + for role in roles: + self.add_role_to_user(user, role) + return user + + + def add_role_to_user(self, user, role): + """Adds a role tp a user + + :param user: The user to manipulate + :param role: The role to add to the user + """ + user, role = self._prepare_role_modify_args(user, role) + if self.UserRole.select().where(self.UserRole.user==user, self.UserRole.role==role).count(): + return False + else: + self.UserRole.create(user=user, role=role) + return True + + def remove_role_from_user(self, user, role): + """Removes a role from a user + + :param user: The user to manipulate + :param role: The role to remove from the user + """ + user, role = self._prepare_role_modify_args(user, role) + if self.UserRole.select().where(self.UserRole.user==user, self.UserRole.role==role).count(): + self.UserRole.delete().where(self.UserRole.user==user, self.UserRole.role==role) + return True + else: + return False + diff --git a/wqflask/flask_security/decorators.py b/wqflask/flask_security/decorators.py new file mode 100644 index 00000000..0ea1105c --- /dev/null +++ b/wqflask/flask_security/decorators.py @@ -0,0 +1,207 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.decorators + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security decorators module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from functools import wraps + +from flask import current_app, Response, request, redirect, _request_ctx_stack +from flask.ext.login import current_user, login_required +from flask.ext.principal import RoleNeed, Permission, Identity, identity_changed +from werkzeug.local import LocalProxy + +from . import utils + + +# Convenient references +_security = LocalProxy(lambda: current_app.extensions['security']) + + +_default_unauthorized_html = """ + <h1>Unauthorized</h1> + <p>The server could not verify that you are authorized to access the URL + requested. You either supplied the wrong credentials (e.g. a bad password), + or your browser doesn't understand how to supply the credentials required.</p> + """ + + +def _get_unauthorized_response(text=None, headers=None): + text = text or _default_unauthorized_html + headers = headers or {} + return Response(text, 401, headers) + + +def _get_unauthorized_view(): + cv = utils.get_url(utils.config_value('UNAUTHORIZED_VIEW')) + utils.do_flash(*utils.get_message('UNAUTHORIZED')) + return redirect(cv or request.referrer or '/') + + +def _check_token(): + header_key = _security.token_authentication_header + args_key = _security.token_authentication_key + header_token = request.headers.get(header_key, None) + token = request.args.get(args_key, header_token) + if request.json: + token = request.json.get(args_key, token) + serializer = _security.remember_token_serializer + + try: + data = serializer.loads(token) + except: + return False + + user = _security.datastore.find_user(id=data[0]) + + if utils.md5(user.password) == data[1]: + app = current_app._get_current_object() + _request_ctx_stack.top.user = user + identity_changed.send(app, identity=Identity(user.id)) + return True + + +def _check_http_auth(): + auth = request.authorization or dict(username=None, password=None) + user = _security.datastore.find_user(email=auth.username) + + if user and utils.verify_and_update_password(auth.password, user): + _security.datastore.commit() + app = current_app._get_current_object() + _request_ctx_stack.top.user = user + identity_changed.send(app, identity=Identity(user.id)) + return True + + return False + + +def http_auth_required(realm): + """Decorator that protects endpoints using Basic HTTP authentication. + The username should be set to the user's email address. + + :param realm: optional realm name""" + + def decorator(fn): + @wraps(fn) + def wrapper(*args, **kwargs): + if _check_http_auth(): + return fn(*args, **kwargs) + r = _security.default_http_auth_realm if callable(realm) else realm + h = {'WWW-Authenticate': 'Basic realm="%s"' % r} + return _get_unauthorized_response(headers=h) + return wrapper + + if callable(realm): + return decorator(realm) + return decorator + + +def auth_token_required(fn): + """Decorator that protects endpoints using token authentication. The token + should be added to the request by the client by using a query string + variable with a name equal to the configuration value of + `SECURITY_TOKEN_AUTHENTICATION_KEY` or in a request header named that of + the configuration value of `SECURITY_TOKEN_AUTHENTICATION_HEADER` + """ + + @wraps(fn) + def decorated(*args, **kwargs): + if _check_token(): + return fn(*args, **kwargs) + return _get_unauthorized_response() + return decorated + + +def auth_required(*auth_methods): + """ + Decorator that protects enpoints through multiple mechanisms + Example:: + + @app.route('/dashboard') + @auth_required('token', 'session') + def dashboard(): + return 'Dashboard' + + :param auth_methods: Specified mechanisms. + """ + login_mechanisms = { + 'token': lambda: _check_token(), + 'basic': lambda: _check_http_auth(), + 'session': lambda: current_user.is_authenticated() + } + + def wrapper(fn): + @wraps(fn) + def decorated_view(*args, **kwargs): + mechanisms = [login_mechanisms.get(method) for method in auth_methods] + for mechanism in mechanisms: + if mechanism and mechanism(): + return fn(*args, **kwargs) + return _get_unauthorized_response() + return decorated_view + return wrapper + + +def roles_required(*roles): + """Decorator which specifies that a user must have all the specified roles. + Example:: + + @app.route('/dashboard') + @roles_required('admin', 'editor') + def dashboard(): + return 'Dashboard' + + The current user must have both the `admin` role and `editor` role in order + to view the page. + + :param args: The required roles. + """ + def wrapper(fn): + @wraps(fn) + def decorated_view(*args, **kwargs): + perms = [Permission(RoleNeed(role)) for role in roles] + for perm in perms: + if not perm.can(): + return _get_unauthorized_view() + return fn(*args, **kwargs) + return decorated_view + return wrapper + + +def roles_accepted(*roles): + """Decorator which specifies that a user must have at least one of the + specified roles. Example:: + + @app.route('/create_post') + @roles_accepted('editor', 'author') + def create_post(): + return 'Create Post' + + The current user must have either the `editor` role or `author` role in + order to view the page. + + :param args: The possible roles. + """ + def wrapper(fn): + @wraps(fn) + def decorated_view(*args, **kwargs): + perm = Permission(*[RoleNeed(role) for role in roles]) + if perm.can(): + return fn(*args, **kwargs) + return _get_unauthorized_view() + return decorated_view + return wrapper + + +def anonymous_user_required(f): + @wraps(f) + def wrapper(*args, **kwargs): + if current_user.is_authenticated(): + return redirect(utils.get_url(_security.post_login_view)) + return f(*args, **kwargs) + return wrapper diff --git a/wqflask/flask_security/forms.py b/wqflask/flask_security/forms.py new file mode 100644 index 00000000..e64e1502 --- /dev/null +++ b/wqflask/flask_security/forms.py @@ -0,0 +1,277 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.forms + ~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security forms module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +import inspect +import urlparse + +import flask_wtf as wtf + +from flask import request, current_app +from flask_wtf import Form as BaseForm, TextField, PasswordField, \ + SubmitField, HiddenField, BooleanField, ValidationError, Field +from flask_login import current_user +from werkzeug.local import LocalProxy + +from .confirmable import requires_confirmation +from .utils import verify_and_update_password, get_message + +# Convenient reference +_datastore = LocalProxy(lambda: current_app.extensions['security'].datastore) + +_default_field_labels = { + 'email': 'Email Address', + 'password': 'Password', + 'remember_me': 'Remember Me', + 'login': 'Login', + 'retype_password': 'Retype Password', + 'register': 'Register', + 'send_confirmation': 'Resend Confirmation Instructions', + 'recover_password': 'Recover Password', + 'reset_password': 'Reset Password', + 'retype_password': 'Retype Password', + 'new_password': 'New Password', + 'change_password': 'Change Password', + 'send_login_link': 'Send Login Link' +} + + +class ValidatorMixin(object): + def __call__(self, form, field): + if self.message and self.message.isupper(): + self.message = get_message(self.message)[0] + return super(ValidatorMixin, self).__call__(form, field) + + +class EqualTo(ValidatorMixin, wtf.EqualTo): + pass + + +class Required(ValidatorMixin, wtf.Required): + pass + + +class Email(ValidatorMixin, wtf.Email): + pass + + +class Length(ValidatorMixin, wtf.Length): + pass + + +email_required = Required(message='EMAIL_NOT_PROVIDED') +email_validator = Email(message='INVALID_EMAIL_ADDRESS') +password_required = Required(message='PASSWORD_NOT_PROVIDED') + + +def get_form_field_label(key): + return _default_field_labels.get(key, '') + + +def unique_user_email(form, field): + if _datastore.find_user(email=field.data) is not None: + msg = get_message('EMAIL_ALREADY_ASSOCIATED', email=field.data)[0] + raise ValidationError(msg) + + +def valid_user_email(form, field): + form.user = _datastore.find_user(email=field.data) + if form.user is None: + raise ValidationError(get_message('USER_DOES_NOT_EXIST')[0]) + + +class Form(BaseForm): + def __init__(self, *args, **kwargs): + if current_app.testing: + self.TIME_LIMIT = None + super(Form, self).__init__(*args, **kwargs) + + +class EmailFormMixin(): + email = TextField(get_form_field_label('email'), + validators=[email_required, + email_validator]) + + +class UserEmailFormMixin(): + user = None + email = TextField(get_form_field_label('email'), + validators=[email_required, + email_validator, + valid_user_email]) + + +class UniqueEmailFormMixin(): + email = TextField(get_form_field_label('email'), + validators=[email_required, + email_validator, + unique_user_email]) + + +class PasswordFormMixin(): + password = PasswordField(get_form_field_label('password'), + validators=[password_required]) + + +class NewPasswordFormMixin(): + password = PasswordField(get_form_field_label('password'), + validators=[password_required, + Length(min=6, max=128)]) + + +class PasswordConfirmFormMixin(): + password_confirm = PasswordField( + get_form_field_label('retype_password'), + validators=[EqualTo('password', message='RETYPE_PASSWORD_MISMATCH')]) + + +class NextFormMixin(): + next = HiddenField() + + def validate_next(self, field): + url_next = urlparse.urlsplit(field.data) + url_base = urlparse.urlsplit(request.host_url) + if url_next.netloc and url_next.netloc != url_base.netloc: + field.data = '' + raise ValidationError(get_message('INVALID_REDIRECT')[0]) + + +class RegisterFormMixin(): + submit = SubmitField(get_form_field_label('register')) + + def to_dict(form): + def is_field_and_user_attr(member): + return isinstance(member, Field) and \ + hasattr(_datastore.user_model, member.name) + + fields = inspect.getmembers(form, is_field_and_user_attr) + return dict((key, value.data) for key, value in fields) + + +class SendConfirmationForm(Form, UserEmailFormMixin): + """The default forgot password form""" + + submit = SubmitField(get_form_field_label('send_confirmation')) + + def __init__(self, *args, **kwargs): + super(SendConfirmationForm, self).__init__(*args, **kwargs) + if request.method == 'GET': + self.email.data = request.args.get('email', None) + + def validate(self): + if not super(SendConfirmationForm, self).validate(): + return False + if self.user.confirmed_at is not None: + self.email.errors.append(get_message('ALREADY_CONFIRMED')[0]) + return False + return True + + +class ForgotPasswordForm(Form, UserEmailFormMixin): + """The default forgot password form""" + + submit = SubmitField(get_form_field_label('recover_password')) + + +class PasswordlessLoginForm(Form, UserEmailFormMixin): + """The passwordless login form""" + + submit = SubmitField(get_form_field_label('send_login_link')) + + def __init__(self, *args, **kwargs): + super(PasswordlessLoginForm, self).__init__(*args, **kwargs) + + def validate(self): + if not super(PasswordlessLoginForm, self).validate(): + return False + if not self.user.is_active(): + self.email.errors.append(get_message('DISABLED_ACCOUNT')[0]) + return False + return True + + +class LoginForm(Form, NextFormMixin): + """The default login form""" + + email = TextField(get_form_field_label('email')) + password = PasswordField(get_form_field_label('password')) + remember = BooleanField(get_form_field_label('remember_me')) + submit = SubmitField(get_form_field_label('login')) + + def __init__(self, *args, **kwargs): + super(LoginForm, self).__init__(*args, **kwargs) + + def validate(self): + if not super(LoginForm, self).validate(): + return False + + if self.email.data.strip() == '': + self.email.errors.append(get_message('EMAIL_NOT_PROVIDED')[0]) + return False + + if self.password.data.strip() == '': + self.password.errors.append(get_message('PASSWORD_NOT_PROVIDED')[0]) + return False + + self.user = _datastore.find_user(email=self.email.data) + + if self.user is None: + self.email.errors.append(get_message('USER_DOES_NOT_EXIST')[0]) + return False + if not verify_and_update_password(self.password.data, self.user): + self.password.errors.append(get_message('INVALID_PASSWORD')[0]) + return False + if requires_confirmation(self.user): + self.email.errors.append(get_message('CONFIRMATION_REQUIRED')[0]) + return False + if not self.user.is_active(): + self.email.errors.append(get_message('DISABLED_ACCOUNT')[0]) + return False + return True + + +class ConfirmRegisterForm(Form, RegisterFormMixin, + UniqueEmailFormMixin, NewPasswordFormMixin): + pass + + +class RegisterForm(ConfirmRegisterForm, PasswordConfirmFormMixin): + pass + + +class ResetPasswordForm(Form, NewPasswordFormMixin, PasswordConfirmFormMixin): + """The default reset password form""" + + submit = SubmitField(get_form_field_label('reset_password')) + + +class ChangePasswordForm(Form, PasswordFormMixin): + """The default change password form""" + + new_password = PasswordField(get_form_field_label('new_password'), + validators=[password_required, + Length(min=6, max=128)]) + + new_password_confirm = PasswordField(get_form_field_label('retype_password'), + validators=[EqualTo('new_password', message='RETYPE_PASSWORD_MISMATCH')]) + + submit = SubmitField(get_form_field_label('change_password')) + + def validate(self): + if not super(ChangePasswordForm, self).validate(): + return False + + if self.password.data.strip() == '': + self.password.errors.append(get_message('PASSWORD_NOT_PROVIDED')[0]) + return False + if not verify_and_update_password(self.password.data, current_user): + self.password.errors.append(get_message('INVALID_PASSWORD')[0]) + return False + return True diff --git a/wqflask/flask_security/passwordless.py b/wqflask/flask_security/passwordless.py new file mode 100644 index 00000000..b0accb2c --- /dev/null +++ b/wqflask/flask_security/passwordless.py @@ -0,0 +1,59 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.passwordless + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security passwordless module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from flask import request, current_app as app +from werkzeug.local import LocalProxy + +from .signals import login_instructions_sent +from .utils import send_mail, url_for_security, get_token_status, \ + config_value + + +# Convenient references +_security = LocalProxy(lambda: app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def send_login_instructions(user): + """Sends the login instructions email for the specified user. + + :param user: The user to send the instructions to + :param token: The login token + """ + token = generate_login_token(user) + url = url_for_security('token_login', token=token) + login_link = request.url_root[:-1] + url + + send_mail(config_value('EMAIL_SUBJECT_PASSWORDLESS'), user.email, + 'login_instructions', user=user, login_link=login_link) + + login_instructions_sent.send(dict(user=user, login_token=token), + app=app._get_current_object()) + + +def generate_login_token(user): + """Generates a unique login token for the specified user. + + :param user: The user the token belongs to + """ + return _security.login_serializer.dumps([str(user.id)]) + + +def login_token_status(token): + """Returns the expired status, invalid status, and user of a login token. + For example:: + + expired, invalid, user = login_token_status('...') + + :param token: The login token + """ + return get_token_status(token, 'login', 'LOGIN') diff --git a/wqflask/flask_security/recoverable.py b/wqflask/flask_security/recoverable.py new file mode 100644 index 00000000..6aafc111 --- /dev/null +++ b/wqflask/flask_security/recoverable.py @@ -0,0 +1,80 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.recoverable + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security recoverable module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from flask import current_app as app, request +from werkzeug.local import LocalProxy + +from .signals import password_reset, reset_password_instructions_sent +from .utils import send_mail, md5, encrypt_password, url_for_security, \ + get_token_status, config_value + + +# Convenient references +_security = LocalProxy(lambda: app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def send_reset_password_instructions(user): + """Sends the reset password instructions email for the specified user. + + :param user: The user to send the instructions to + """ + token = generate_reset_password_token(user) + url = url_for_security('reset_password', token=token) + reset_link = request.url_root[:-1] + url + + send_mail(config_value('EMAIL_SUBJECT_PASSWORD_RESET'), user.email, + 'reset_instructions', + user=user, reset_link=reset_link) + + reset_password_instructions_sent.send(dict(user=user, token=token), + app=app._get_current_object()) + + +def send_password_reset_notice(user): + """Sends the password reset notice email for the specified user. + + :param user: The user to send the notice to + """ + send_mail(config_value('EMAIL_SUBJECT_PASSWORD_NOTICE'), user.email, + 'reset_notice', user=user) + + +def generate_reset_password_token(user): + """Generates a unique reset password token for the specified user. + + :param user: The user to work with + """ + data = [str(user.id), md5(user.password)] + return _security.reset_serializer.dumps(data) + + +def reset_password_token_status(token): + """Returns the expired status, invalid status, and user of a password reset + token. For example:: + + expired, invalid, user = reset_password_token_status('...') + + :param token: The password reset token + """ + return get_token_status(token, 'reset', 'RESET_PASSWORD') + +def update_password(user, password): + """Update the specified user's password + + :param user: The user to update_password + :param password: The unencrypted new password + """ + user.password = encrypt_password(password) + _datastore.put(user) + send_password_reset_notice(user) + password_reset.send(user, app=app._get_current_object()) diff --git a/wqflask/flask_security/registerable.py b/wqflask/flask_security/registerable.py new file mode 100644 index 00000000..4e9f357d --- /dev/null +++ b/wqflask/flask_security/registerable.py @@ -0,0 +1,43 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.registerable + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security registerable module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from flask import current_app as app +from werkzeug.local import LocalProxy + +from .confirmable import generate_confirmation_link +from .signals import user_registered +from .utils import do_flash, get_message, send_mail, encrypt_password, \ + config_value + +# Convenient references +_security = LocalProxy(lambda: app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def register_user(**kwargs): + confirmation_link, token = None, None + kwargs['password'] = encrypt_password(kwargs['password']) + user = _datastore.create_user(**kwargs) + _datastore.commit() + + if _security.confirmable: + confirmation_link, token = generate_confirmation_link(user) + do_flash(*get_message('CONFIRM_REGISTRATION', email=user.email)) + + user_registered.send(dict(user=user, confirm_token=token), + app=app._get_current_object()) + + if config_value('SEND_REGISTER_EMAIL'): + send_mail(config_value('EMAIL_SUBJECT_REGISTER'), user.email, 'welcome', + user=user, confirmation_link=confirmation_link) + + return user diff --git a/wqflask/flask_security/script.py b/wqflask/flask_security/script.py new file mode 100644 index 00000000..9c9a2469 --- /dev/null +++ b/wqflask/flask_security/script.py @@ -0,0 +1,130 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.script + ~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security script module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" +try: + import simplejson as json +except ImportError: + import json + +import re + +from flask import current_app +from flask.ext.script import Command, Option +from werkzeug.local import LocalProxy + +from .utils import encrypt_password + + +_datastore = LocalProxy(lambda: current_app.extensions['security'].datastore) + + +def pprint(obj): + print json.dumps(obj, sort_keys=True, indent=4) + + +def commit(fn): + def wrapper(*args, **kwargs): + fn(*args, **kwargs) + _datastore.commit() + return wrapper + + +class CreateUserCommand(Command): + """Create a user""" + + option_list = ( + Option('-e', '--email', dest='email', default=None), + Option('-p', '--password', dest='password', default=None), + Option('-a', '--active', dest='active', default=''), + ) + + @commit + def run(self, **kwargs): + # sanitize active input + ai = re.sub(r'\s', '', str(kwargs['active'])) + kwargs['active'] = ai.lower() in ['', 'y', 'yes', '1', 'active'] + + from flask_security.forms import ConfirmRegisterForm + from werkzeug.datastructures import MultiDict + + form = ConfirmRegisterForm(MultiDict(kwargs), csrf_enabled=False) + + if form.validate(): + kwargs['password'] = encrypt_password(kwargs['password']) + _datastore.create_user(**kwargs) + print 'User created successfully.' + kwargs['password'] = '****' + pprint(kwargs) + else: + print 'Error creating user' + pprint(form.errors) + + +class CreateRoleCommand(Command): + """Create a role""" + + option_list = ( + Option('-n', '--name', dest='name', default=None), + Option('-d', '--desc', dest='description', default=None), + ) + + @commit + def run(self, **kwargs): + _datastore.create_role(**kwargs) + print 'Role "%(name)s" created successfully.' % kwargs + + +class _RoleCommand(Command): + option_list = ( + Option('-u', '--user', dest='user_identifier'), + Option('-r', '--role', dest='role_name'), + ) + + +class AddRoleCommand(_RoleCommand): + """Add a role to a user""" + + @commit + def run(self, user_identifier, role_name): + _datastore.add_role_to_user(user_identifier, role_name) + print "Role '%s' added to user '%s' successfully" % (role_name, user_identifier) + + +class RemoveRoleCommand(_RoleCommand): + """Add a role to a user""" + + @commit + def run(self, user_identifier, role_name): + _datastore.remove_role_from_user(user_identifier, role_name) + print "Role '%s' removed from user '%s' successfully" % (role_name, user_identifier) + + +class _ToggleActiveCommand(Command): + option_list = ( + Option('-u', '--user', dest='user_identifier'), + ) + + +class DeactivateUserCommand(_ToggleActiveCommand): + """Deactive a user""" + + @commit + def run(self, user_identifier): + _datastore.deactivate_user(user_identifier) + print "User '%s' has been deactivated" % user_identifier + + +class ActivateUserCommand(_ToggleActiveCommand): + """Deactive a user""" + + @commit + def run(self, user_identifier): + _datastore.activate_user(user_identifier) + print "User '%s' has been activated" % user_identifier diff --git a/wqflask/flask_security/signals.py b/wqflask/flask_security/signals.py new file mode 100644 index 00000000..e1c29548 --- /dev/null +++ b/wqflask/flask_security/signals.py @@ -0,0 +1,29 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.signals + ~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security signals module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +import blinker + + +signals = blinker.Namespace() + +user_registered = signals.signal("user-registered") + +user_confirmed = signals.signal("user-confirmed") + +confirm_instructions_sent = signals.signal("confirm-instructions-sent") + +login_instructions_sent = signals.signal("login-instructions-sent") + +password_reset = signals.signal("password-reset") + +password_changed = signals.signal("password-changed") + +reset_password_instructions_sent = signals.signal("password-reset-instructions-sent") diff --git a/wqflask/flask_security/templates/.DS_Store b/wqflask/flask_security/templates/.DS_Store Binary files differnew file mode 100644 index 00000000..b72f1d98 --- /dev/null +++ b/wqflask/flask_security/templates/.DS_Store diff --git a/wqflask/flask_security/templates/security/.DS_Store b/wqflask/flask_security/templates/security/.DS_Store Binary files differnew file mode 100644 index 00000000..5008ddfc --- /dev/null +++ b/wqflask/flask_security/templates/security/.DS_Store diff --git a/wqflask/flask_security/templates/security/_macros.html b/wqflask/flask_security/templates/security/_macros.html new file mode 100644 index 00000000..8575f3db --- /dev/null +++ b/wqflask/flask_security/templates/security/_macros.html @@ -0,0 +1,16 @@ +{% macro render_field_with_errors(field) %} + <p> + {{ field.label }} {{ field(**kwargs)|safe }} + {% if field.errors %} + <ul> + {% for error in field.errors %} + <li>{{ error }}</li> + {% endfor %} + </ul> + {% endif %} + </p> +{% endmacro %} + +{% macro render_field(field) %} + <p>{{ field(**kwargs)|safe }}</p> +{% endmacro %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/_menu.html b/wqflask/flask_security/templates/security/_menu.html new file mode 100644 index 00000000..5291f809 --- /dev/null +++ b/wqflask/flask_security/templates/security/_menu.html @@ -0,0 +1,15 @@ +{% if security.registerable or security.recoverable or security.confirmabled %} +<h2>Menu</h2> +<ul> + <li><a href="{{ url_for_security('login') }}">Login</a></li> + {% if security.registerable %} + <li><a href="{{ url_for_security('register') }}">Register</a><br/></li> + {% endif %} + {% if security.recoverable %} + <li><a href="{{ url_for_security('forgot_password') }}">Forgot password</a><br/></li> + {% endif %} + {% if security.confirmable %} + <li><a href="{{ url_for_security('send_confirmation') }}">Confirm account</a></li> + {% endif %} +</ul> +{% endif %} diff --git a/wqflask/flask_security/templates/security/_messages.html b/wqflask/flask_security/templates/security/_messages.html new file mode 100644 index 00000000..179d0636 --- /dev/null +++ b/wqflask/flask_security/templates/security/_messages.html @@ -0,0 +1,9 @@ +{%- with messages = get_flashed_messages(with_categories=true) -%} + {% if messages %} + <ul class="flashes"> + {% for category, message in messages %} + <li class="{{ category }}">{{ message }}</li> + {% endfor %} + </ul> + {% endif %} +{%- endwith %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/change_password.html b/wqflask/flask_security/templates/security/change_password.html new file mode 100644 index 00000000..8ee3eb73 --- /dev/null +++ b/wqflask/flask_security/templates/security/change_password.html @@ -0,0 +1,11 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Change password</h1> +<form action="{{ url_for_security('change_password') }}" method="POST" name="change_password_form"> + {{ change_password_form.hidden_tag() }} + {{ render_field_with_errors(change_password_form.password) }} + {{ render_field_with_errors(change_password_form.new_password) }} + {{ render_field_with_errors(change_password_form.new_password_confirm) }} + {{ render_field(change_password_form.submit) }} +</form> + diff --git a/wqflask/flask_security/templates/security/email/change_notice.html b/wqflask/flask_security/templates/security/email/change_notice.html new file mode 100644 index 00000000..d1224cf5 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/change_notice.html @@ -0,0 +1,4 @@ +<p>Your password has been changed.</p> +{% if security.recoverable %} +<p>If you did not change your password, <a href="{{ url_for_security('forgot_password', _external=True) }}">click here to reset it</a>.</p> +{% endif %} diff --git a/wqflask/flask_security/templates/security/email/change_notice.txt b/wqflask/flask_security/templates/security/email/change_notice.txt new file mode 100644 index 00000000..e74bd80d --- /dev/null +++ b/wqflask/flask_security/templates/security/email/change_notice.txt @@ -0,0 +1,5 @@ +Your password has been changed +{% if security.recoverable %} +If you did not change your password, click the link below to reset it. +{{ url_for_security('forgot_password', _external=True) }} +{% endif %} diff --git a/wqflask/flask_security/templates/security/email/confirmation_instructions.html b/wqflask/flask_security/templates/security/email/confirmation_instructions.html new file mode 100644 index 00000000..5082a9a8 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/confirmation_instructions.html @@ -0,0 +1,3 @@ +<p>Please confirm your email through the link below:</p> + +<p><a href="{{ confirmation_link }}">Confirm my account</a></p>
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/confirmation_instructions.txt b/wqflask/flask_security/templates/security/email/confirmation_instructions.txt new file mode 100644 index 00000000..fb435b55 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/confirmation_instructions.txt @@ -0,0 +1,3 @@ +Please confirm your email through the link below: + +{{ confirmation_link }}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/login_instructions.html b/wqflask/flask_security/templates/security/email/login_instructions.html new file mode 100644 index 00000000..45a7cb57 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/login_instructions.html @@ -0,0 +1,5 @@ +<p>Welcome {{ user.email }}!</p> + +<p>You can log into your through the link below:</p> + +<p><a href="{{ login_link }}">Login now</a></p>
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/login_instructions.txt b/wqflask/flask_security/templates/security/email/login_instructions.txt new file mode 100644 index 00000000..1364ed65 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/login_instructions.txt @@ -0,0 +1,5 @@ +Welcome {{ user.email }}! + +You can log into your through the link below: + +{{ login_link }}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/reset_instructions.html b/wqflask/flask_security/templates/security/email/reset_instructions.html new file mode 100644 index 00000000..fd0b48d8 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/reset_instructions.html @@ -0,0 +1 @@ +<p><a href="{{ reset_link }}">Click here to reset your password</a></p>
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/reset_instructions.txt b/wqflask/flask_security/templates/security/email/reset_instructions.txt new file mode 100644 index 00000000..91ac288e --- /dev/null +++ b/wqflask/flask_security/templates/security/email/reset_instructions.txt @@ -0,0 +1,3 @@ +Click the link below to reset your password: + +{{ reset_link }}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/reset_notice.html b/wqflask/flask_security/templates/security/email/reset_notice.html new file mode 100644 index 00000000..536e2961 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/reset_notice.html @@ -0,0 +1 @@ +<p>Your password has been reset</p>
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/reset_notice.txt b/wqflask/flask_security/templates/security/email/reset_notice.txt new file mode 100644 index 00000000..a3fa0b4b --- /dev/null +++ b/wqflask/flask_security/templates/security/email/reset_notice.txt @@ -0,0 +1 @@ +Your password has been reset
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/welcome.html b/wqflask/flask_security/templates/security/email/welcome.html new file mode 100644 index 00000000..55eaed61 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/welcome.html @@ -0,0 +1,7 @@ +<p>Welcome {{ user.email }}!</p> + +{% if security.confirmable %} +<p>You can confirm your email through the link below:</p> + +<p><a href="{{ confirmation_link }}">Confirm my account</a></p> +{% endif %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/email/welcome.txt b/wqflask/flask_security/templates/security/email/welcome.txt new file mode 100644 index 00000000..fb6ee5b5 --- /dev/null +++ b/wqflask/flask_security/templates/security/email/welcome.txt @@ -0,0 +1,7 @@ +Welcome {{ user.email }}! + +{% if security.confirmable %} +You can confirm your email through the link below: + +{{ confirmation_link }} +{% endif %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/forgot_password.html b/wqflask/flask_security/templates/security/forgot_password.html new file mode 100644 index 00000000..90fcaf66 --- /dev/null +++ b/wqflask/flask_security/templates/security/forgot_password.html @@ -0,0 +1,9 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Send password reset instructions</h1> +<form action="{{ url_for_security('forgot_password') }}" method="POST" name="forgot_password_form"> + {{ forgot_password_form.hidden_tag() }} + {{ render_field_with_errors(forgot_password_form.email) }} + {{ render_field(forgot_password_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/login_user.html b/wqflask/flask_security/templates/security/login_user.html new file mode 100644 index 00000000..d781ce08 --- /dev/null +++ b/wqflask/flask_security/templates/security/login_user.html @@ -0,0 +1,12 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Login</h1> +<form action="{{ url_for_security('login') }}" method="POST" name="login_user_form"> + {{ login_user_form.hidden_tag() }} + {{ render_field_with_errors(login_user_form.email) }} + {{ render_field_with_errors(login_user_form.password) }} + {{ render_field_with_errors(login_user_form.remember) }} + {{ render_field(login_user_form.next) }} + {{ render_field(login_user_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/register_user.html b/wqflask/flask_security/templates/security/register_user.html new file mode 100644 index 00000000..87cf9b1d --- /dev/null +++ b/wqflask/flask_security/templates/security/register_user.html @@ -0,0 +1,13 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Register</h1> +<form action="{{ url_for_security('register') }}" method="POST" name="register_user_form"> + {{ register_user_form.hidden_tag() }} + {{ render_field_with_errors(register_user_form.email) }} + {{ render_field_with_errors(register_user_form.password) }} + {% if register_user_form.password_confirm %} + {{ render_field_with_errors(register_user_form.password_confirm) }} + {% endif %} + {{ render_field(register_user_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/reset_password.html b/wqflask/flask_security/templates/security/reset_password.html new file mode 100644 index 00000000..e6fc3f58 --- /dev/null +++ b/wqflask/flask_security/templates/security/reset_password.html @@ -0,0 +1,10 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Reset password</h1> +<form action="{{ url_for_security('reset_password', token=reset_password_token) }}" method="POST" name="reset_password_form"> + {{ reset_password_form.hidden_tag() }} + {{ render_field_with_errors(reset_password_form.password) }} + {{ render_field_with_errors(reset_password_form.password_confirm) }} + {{ render_field(reset_password_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/send_confirmation.html b/wqflask/flask_security/templates/security/send_confirmation.html new file mode 100644 index 00000000..3e828407 --- /dev/null +++ b/wqflask/flask_security/templates/security/send_confirmation.html @@ -0,0 +1,9 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Resend confirmation instructions</h1> +<form action="{{ url_for_security('send_confirmation') }}" method="POST" name="send_confirmation_form"> + {{ send_confirmation_form.hidden_tag() }} + {{ render_field_with_errors(send_confirmation_form.email) }} + {{ render_field(send_confirmation_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/templates/security/send_login.html b/wqflask/flask_security/templates/security/send_login.html new file mode 100644 index 00000000..15611c57 --- /dev/null +++ b/wqflask/flask_security/templates/security/send_login.html @@ -0,0 +1,9 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Login</h1> +<form action="{{ url_for_security('login') }}" method="POST" name="send_login_form"> + {{ send_login_form.hidden_tag() }} + {{ render_field_with_errors(send_login_form.email) }} + {{ render_field(send_login_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/flask_security/utils.py b/wqflask/flask_security/utils.py new file mode 100644 index 00000000..7397ab4f --- /dev/null +++ b/wqflask/flask_security/utils.py @@ -0,0 +1,379 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.utils + ~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security utils module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +import base64 +import blinker +import functools +import hashlib +import hmac +from contextlib import contextmanager +from datetime import datetime, timedelta + +from flask import url_for, flash, current_app, request, session, render_template +from flask.ext.login import login_user as _login_user, \ + logout_user as _logout_user +from flask.ext.mail import Message +from flask.ext.principal import Identity, AnonymousIdentity, identity_changed +from itsdangerous import BadSignature, SignatureExpired +from werkzeug.local import LocalProxy + +from .signals import user_registered, user_confirmed, \ + confirm_instructions_sent, login_instructions_sent, \ + password_reset, password_changed, reset_password_instructions_sent + +# Convenient references +_security = LocalProxy(lambda: current_app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + +_pwd_context = LocalProxy(lambda: _security.pwd_context) + + +def login_user(user, remember=True): + """Performs the login and sends the appropriate signal.""" + + if not _login_user(user, remember): + return False + + if _security.trackable: + old_current_login, new_current_login = user.current_login_at, datetime.utcnow() + remote_addr = request.remote_addr or 'untrackable' + old_current_ip, new_current_ip = user.current_login_ip, remote_addr + + user.last_login_at = old_current_login or new_current_login + user.current_login_at = new_current_login + user.last_login_ip = old_current_ip or new_current_ip + user.current_login_ip = new_current_ip + user.login_count = user.login_count + 1 if user.login_count else 1 + + _datastore.put(user) + + identity_changed.send(current_app._get_current_object(), + identity=Identity(user.id)) + return True + + +def logout_user(): + for key in ('identity.name', 'identity.auth_type'): + session.pop(key, None) + identity_changed.send(current_app._get_current_object(), + identity=AnonymousIdentity()) + _logout_user() + + +def get_hmac(password): + if _security.password_hash == 'plaintext': + return password + + if _security.password_salt is None: + raise RuntimeError('The configuration value `SECURITY_PASSWORD_SALT` ' + 'must not be None when the value of `SECURITY_PASSWORD_HASH` is ' + 'set to "%s"' % _security.password_hash) + + h = hmac.new(_security.password_salt, password.encode('utf-8'), hashlib.sha512) + return base64.b64encode(h.digest()) + + +def verify_password(password, password_hash): + return _pwd_context.verify(get_hmac(password), password_hash) + + +def verify_and_update_password(password, user): + verified, new_password = _pwd_context.verify_and_update(get_hmac(password), user.password) + if verified and new_password: + user.password = new_password + _datastore.put(user) + return verified + + +def encrypt_password(password): + return _pwd_context.encrypt(get_hmac(password)) + + +def md5(data): + return hashlib.md5(data).hexdigest() + + +def do_flash(message, category=None): + """Flash a message depending on if the `FLASH_MESSAGES` configuration + value is set. + + :param message: The flash message + :param category: The flash message category + """ + if config_value('FLASH_MESSAGES'): + flash(message, category) + + +def get_url(endpoint_or_url): + """Returns a URL if a valid endpoint is found. Otherwise, returns the + provided value. + + :param endpoint_or_url: The endpoint name or URL to default to + """ + try: + return url_for(endpoint_or_url) + except: + return endpoint_or_url + + +def get_security_endpoint_name(endpoint): + return '%s.%s' % (_security.blueprint_name, endpoint) + + +def url_for_security(endpoint, **values): + """Return a URL for the security blueprint + + :param endpoint: the endpoint of the URL (name of the function) + :param values: the variable arguments of the URL rule + :param _external: if set to `True`, an absolute URL is generated. Server + address can be changed via `SERVER_NAME` configuration variable which + defaults to `localhost`. + :param _anchor: if provided this is added as anchor to the URL. + :param _method: if provided this explicitly specifies an HTTP method. + """ + endpoint = get_security_endpoint_name(endpoint) + return url_for(endpoint, **values) + + +def get_post_login_redirect(): + """Returns the URL to redirect to after a user logs in successfully.""" + return (get_url(request.args.get('next')) or + get_url(request.form.get('next')) or + find_redirect('SECURITY_POST_LOGIN_VIEW')) + + +def find_redirect(key): + """Returns the URL to redirect to after a user logs in successfully. + + :param key: The session or application configuration key to search for + """ + rv = (get_url(session.pop(key.lower(), None)) or + get_url(current_app.config[key.upper()] or None) or '/') + return rv + + +def get_config(app): + """Conveniently get the security configuration for the specified + application without the annoying 'SECURITY_' prefix. + + :param app: The application to inspect + """ + items = app.config.items() + prefix = 'SECURITY_' + + def strip_prefix(tup): + return (tup[0].replace('SECURITY_', ''), tup[1]) + + return dict([strip_prefix(i) for i in items if i[0].startswith(prefix)]) + + +def get_message(key, **kwargs): + rv = config_value('MSG_' + key) + return rv[0] % kwargs, rv[1] + + +def config_value(key, app=None, default=None): + """Get a Flask-Security configuration value. + + :param key: The configuration key without the prefix `SECURITY_` + :param app: An optional specific application to inspect. Defaults to Flask's + `current_app` + :param default: An optional default value if the value is not set + """ + app = app or current_app + return get_config(app).get(key.upper(), default) + + +def get_max_age(key, app=None): + now = datetime.utcnow() + expires = now + get_within_delta(key + '_WITHIN', app) + td = (expires - now) + return (td.microseconds + (td.seconds + td.days * 24 * 3600) * 1e6) / 1e6 + + +def get_within_delta(key, app=None): + """Get a timedelta object from the application configuration following + the internal convention of:: + + <Amount of Units> <Type of Units> + + Examples of valid config values:: + + 5 days + 10 minutes + + :param key: The config value key without the 'SECURITY_' prefix + :param app: Optional application to inspect. Defaults to Flask's + `current_app` + """ + txt = config_value(key, app=app) + values = txt.split() + return timedelta(**{values[1]: int(values[0])}) + + +def send_mail(subject, recipient, template, **context): + """Send an email via the Flask-Mail extension. + + :param subject: Email subject + :param recipient: Email recipient + :param template: The name of the email template + :param context: The context to render the template with + """ + + context.setdefault('security', _security) + context.update(_security._run_ctx_processor('mail')) + + msg = Message(subject, + sender=_security.email_sender, + recipients=[recipient]) + + ctx = ('security/email', template) + msg.body = render_template('%s/%s.txt' % ctx, **context) + msg.html = render_template('%s/%s.html' % ctx, **context) + + if _security._send_mail_task: + _security._send_mail_task(msg) + return + + mail = current_app.extensions.get('mail') + mail.send(msg) + + +def get_token_status(token, serializer, max_age=None): + serializer = getattr(_security, serializer + '_serializer') + max_age = get_max_age(max_age) + user, data = None, None + expired, invalid = False, False + + try: + data = serializer.loads(token, max_age=max_age) + except SignatureExpired: + d, data = serializer.loads_unsafe(token) + expired = True + except BadSignature: + invalid = True + + if data: + user = _datastore.find_user(id=data[0]) + + expired = expired and (user is not None) + return expired, invalid, user + + +@contextmanager +def capture_passwordless_login_requests(): + login_requests = [] + + def _on(data, app): + login_requests.append(data) + + login_instructions_sent.connect(_on) + + try: + yield login_requests + finally: + login_instructions_sent.disconnect(_on) + + +@contextmanager +def capture_registrations(): + """Testing utility for capturing registrations. + + :param confirmation_sent_at: An optional datetime object to set the + user's `confirmation_sent_at` to + """ + registrations = [] + + def _on(data, app): + registrations.append(data) + + user_registered.connect(_on) + + try: + yield registrations + finally: + user_registered.disconnect(_on) + + +@contextmanager +def capture_reset_password_requests(reset_password_sent_at=None): + """Testing utility for capturing password reset requests. + + :param reset_password_sent_at: An optional datetime object to set the + user's `reset_password_sent_at` to + """ + reset_requests = [] + + def _on(request, app): + reset_requests.append(request) + + reset_password_instructions_sent.connect(_on) + + try: + yield reset_requests + finally: + reset_password_instructions_sent.disconnect(_on) + + +class CaptureSignals(object): + """Testing utility for capturing blinker signals. + + Context manager which mocks out selected signals and registers which are `sent` on and what + arguments were sent. Instantiate with a list of blinker `NamedSignals` to patch. Each signal + has it's `send` mocked out. + """ + def __init__(self, signals): + """Patch all given signals and make them available as attributes. + + :param signals: list of signals + """ + self._records = {} + self._receivers = {} + for signal in signals: + self._records[signal] = [] + self._receivers[signal] = functools.partial(self._record, signal) + + def __getitem__(self, signal): + """All captured signals are available via `ctxt[signal]`. + """ + if isinstance(signal, blinker.base.NamedSignal): + return self._records[signal] + else: + super(CaptureSignals, self).__setitem__(signal) + + def _record(self, signal, *args, **kwargs): + self._records[signal].append((args, kwargs)) + + def __enter__(self): + for signal, receiver in self._receivers.iteritems(): + signal.connect(receiver) + return self + + def __exit__(self, type, value, traceback): + for signal, receiver in self._receivers.iteritems(): + signal.disconnect(receiver) + + def signals_sent(self): + """Return a set of the signals sent. + :rtype: list of blinker `NamedSignals`. + """ + return set([signal for signal, _ in self._records.iteritems() if self._records[signal]]) + + +def capture_signals(): + """Factory method that creates a `CaptureSignals` with all the flask_security signals.""" + return CaptureSignals([user_registered, user_confirmed, + confirm_instructions_sent, login_instructions_sent, + password_reset, password_changed, + reset_password_instructions_sent]) + + diff --git a/wqflask/flask_security/views.py b/wqflask/flask_security/views.py new file mode 100644 index 00000000..1b8488d8 --- /dev/null +++ b/wqflask/flask_security/views.py @@ -0,0 +1,359 @@ +# -*- coding: utf-8 -*- +""" + flask.ext.security.views + ~~~~~~~~~~~~~~~~~~~~~~~~ + + Flask-Security views module + + :copyright: (c) 2012 by Matt Wright. + :license: MIT, see LICENSE for more details. +""" + +from flask import current_app, redirect, request, render_template, jsonify, \ + after_this_request, Blueprint +from flask_login import current_user +from werkzeug.datastructures import MultiDict +from werkzeug.local import LocalProxy + +from .confirmable import send_confirmation_instructions, \ + confirm_user, confirm_email_token_status +from .decorators import login_required, anonymous_user_required +from .passwordless import send_login_instructions, \ + login_token_status +from .recoverable import reset_password_token_status, \ + send_reset_password_instructions, update_password +from .changeable import change_user_password +from .registerable import register_user +from .utils import get_url, get_post_login_redirect, do_flash, \ + get_message, login_user, logout_user, url_for_security as url_for, \ + config_value + + +# Convenient references +_security = LocalProxy(lambda: current_app.extensions['security']) + +_datastore = LocalProxy(lambda: _security.datastore) + + +def _render_json(form, include_auth_token=False): + has_errors = len(form.errors) > 0 + + if has_errors: + code = 400 + response = dict(errors=form.errors) + else: + code = 200 + response = dict(user=dict(id=str(form.user.id))) + if include_auth_token: + token = form.user.get_auth_token() + response['user']['authentication_token'] = token + + return jsonify(dict(meta=dict(code=code), response=response)) + + +def _commit(response=None): + _datastore.commit() + return response + + +def _ctx(endpoint): + return _security._run_ctx_processor(endpoint) + + +@anonymous_user_required +def login(): + """View function for login view""" + + form_class = _security.login_form + + if request.json: + form = form_class(MultiDict(request.json)) + else: + form = form_class() + + if form.validate_on_submit(): + login_user(form.user, remember=form.remember.data) + after_this_request(_commit) + + if not request.json: + return redirect(get_post_login_redirect()) + + form.next.data = get_url(request.args.get('next')) \ + or get_url(request.form.get('next')) or '' + + if request.json: + return _render_json(form, True) + + return render_template(config_value('LOGIN_USER_TEMPLATE'), + login_user_form=form, + **_ctx('login')) + + +@login_required +def logout(): + """View function which handles a logout request.""" + + logout_user() + + return redirect(request.args.get('next', None) or + get_url(_security.post_logout_view)) + + +def register(): + """View function which handles a registration request.""" + + if _security.confirmable or request.json: + form_class = _security.confirm_register_form + else: + form_class = _security.register_form + + if request.json: + form_data = MultiDict(request.json) + else: + form_data = request.form + + form = form_class(form_data) + + if form.validate_on_submit(): + user = register_user(**form.to_dict()) + form.user = user + + if not _security.confirmable or _security.login_without_confirmation: + after_this_request(_commit) + login_user(user) + + if not request.json: + post_register_url = get_url(_security.post_register_view) + post_login_url = get_url(_security.post_login_view) + return redirect(post_register_url or post_login_url) + + if request.json: + return _render_json(form) + + return render_template(config_value('REGISTER_USER_TEMPLATE'), + register_user_form=form, + **_ctx('register')) + + +def send_login(): + """View function that sends login instructions for passwordless login""" + + form_class = _security.passwordless_login_form + + if request.json: + form = form_class(MultiDict(request.json)) + else: + form = form_class() + + if form.validate_on_submit(): + send_login_instructions(form.user) + if request.json is None: + do_flash(*get_message('LOGIN_EMAIL_SENT', email=form.user.email)) + + if request.json: + return _render_json(form) + + return render_template(config_value('SEND_LOGIN_TEMPLATE'), + send_login_form=form, + **_ctx('send_login')) + + +@anonymous_user_required +def token_login(token): + """View function that handles passwordless login via a token""" + + expired, invalid, user = login_token_status(token) + + if invalid: + do_flash(*get_message('INVALID_LOGIN_TOKEN')) + if expired: + send_login_instructions(user) + do_flash(*get_message('LOGIN_EXPIRED', email=user.email, + within=_security.login_within)) + if invalid or expired: + return redirect(url_for('login')) + + login_user(user, True) + after_this_request(_commit) + do_flash(*get_message('PASSWORDLESS_LOGIN_SUCCESSFUL')) + + return redirect(get_post_login_redirect()) + + +def send_confirmation(): + """View function which sends confirmation instructions.""" + + form_class = _security.send_confirmation_form + + if request.json: + form = form_class(MultiDict(request.json)) + else: + form = form_class() + + if form.validate_on_submit(): + send_confirmation_instructions(form.user) + if request.json is None: + do_flash(*get_message('CONFIRMATION_REQUEST', email=form.user.email)) + + if request.json: + return _render_json(form) + + return render_template(config_value('SEND_CONFIRMATION_TEMPLATE'), + send_confirmation_form=form, + **_ctx('send_confirmation')) + + +@anonymous_user_required +def confirm_email(token): + """View function which handles a email confirmation request.""" + + expired, invalid, user = confirm_email_token_status(token) + + if not user or invalid: + invalid = True + do_flash(*get_message('INVALID_CONFIRMATION_TOKEN')) + if expired: + send_confirmation_instructions(user) + do_flash(*get_message('CONFIRMATION_EXPIRED', email=user.email, + within=_security.confirm_email_within)) + if invalid or expired: + return redirect(get_url(_security.confirm_error_view) or + url_for('send_confirmation')) + + confirm_user(user) + login_user(user, True) + after_this_request(_commit) + do_flash(*get_message('EMAIL_CONFIRMED')) + + return redirect(get_url(_security.post_confirm_view) or + get_url(_security.post_login_view)) + + +def forgot_password(): + """View function that handles a forgotten password request.""" + + form_class = _security.forgot_password_form + + if request.json: + form = form_class(MultiDict(request.json)) + else: + form = form_class() + + if form.validate_on_submit(): + send_reset_password_instructions(form.user) + if request.json is None: + do_flash(*get_message('PASSWORD_RESET_REQUEST', email=form.user.email)) + + if request.json: + return _render_json(form) + + return render_template(config_value('FORGOT_PASSWORD_TEMPLATE'), + forgot_password_form=form, + **_ctx('forgot_password')) + + +@anonymous_user_required +def reset_password(token): + """View function that handles a reset password request.""" + + expired, invalid, user = reset_password_token_status(token) + + if invalid: + do_flash(*get_message('INVALID_RESET_PASSWORD_TOKEN')) + if expired: + do_flash(*get_message('PASSWORD_RESET_EXPIRED', email=user.email, + within=_security.reset_password_within)) + if invalid or expired: + return redirect(url_for('forgot_password')) + + form = _security.reset_password_form() + + if form.validate_on_submit(): + after_this_request(_commit) + update_password(user, form.password.data) + do_flash(*get_message('PASSWORD_RESET')) + login_user(user, True) + return redirect(get_url(_security.post_reset_view) or + get_url(_security.post_login_view)) + + return render_template(config_value('RESET_PASSWORD_TEMPLATE'), + reset_password_form=form, + reset_password_token=token, + **_ctx('reset_password')) + + +@login_required +def change_password(): + """View function which handles a change password request.""" + + form_class = _security.change_password_form + + if request.json: + form = form_class(MultiDict(request.json)) + else: + form = form_class() + + if form.validate_on_submit(): + after_this_request(_commit) + change_user_password(current_user, form.new_password.data) + if request.json is None: + do_flash(*get_message('PASSWORD_CHANGE')) + return redirect(get_url(_security.post_change_view) or + get_url(_security.post_login_view)) + + if request.json: + return _render_json(form) + + return render_template('security/change_password.html', + change_password_form=form, + **_ctx('change_password')) + + +def create_blueprint(state, import_name): + """Creates the security extension blueprint""" + + bp = Blueprint(state.blueprint_name, import_name, + url_prefix=state.url_prefix, + subdomain=state.subdomain, + template_folder='templates') + + bp.route(state.logout_url, endpoint='logout')(logout) + + if state.passwordless: + bp.route(state.login_url, + methods=['GET', 'POST'], + endpoint='login')(send_login) + bp.route(state.login_url + '/<token>', + endpoint='token_login')(token_login) + else: + bp.route(state.login_url, + methods=['GET', 'POST'], + endpoint='login')(login) + + if state.registerable: + bp.route(state.register_url, + methods=['GET', 'POST'], + endpoint='register')(register) + + if state.recoverable: + bp.route(state.reset_url, + methods=['GET', 'POST'], + endpoint='forgot_password')(forgot_password) + bp.route(state.reset_url + '/<token>', + methods=['GET', 'POST'], + endpoint='reset_password')(reset_password) + + if state.changeable: + bp.route(state.change_url, + methods=['GET', 'POST'], + endpoint='change_password')(change_password) + + if state.confirmable: + bp.route(state.confirm_url, + methods=['GET', 'POST'], + endpoint='send_confirmation')(send_confirmation) + bp.route(state.confirm_url + '/<token>', + methods=['GET', 'POST'], + endpoint='confirm_email')(confirm_email) + + return bp diff --git a/wqflask/maintenance/generate_probesetfreeze_file.py b/wqflask/maintenance/generate_probesetfreeze_file.py new file mode 100644 index 00000000..91a2b8a1 --- /dev/null +++ b/wqflask/maintenance/generate_probesetfreeze_file.py @@ -0,0 +1,123 @@ +#!/usr/bin/python + +from __future__ import absolute_import, print_function, division + +import sys + +sys.path.insert(0, "..") + +import os +import collections +import csv + +import MySQLdb + +from base import webqtlConfig + +from pprint import pformat as pf + + +def get_cursor(): + con = MySQLdb.Connect(db=webqtlConfig.DB_UPDNAME, + host=webqtlConfig.MYSQL_UPDSERVER, + user=webqtlConfig.DB_UPDUSER, + passwd=webqtlConfig.DB_UPDPASSWD) + cursor = con.cursor() + return cursor + +def show_progress(process, counter): + if counter % 1000 == 0: + print("{}: {}".format(process, counter)) + +def get_strains(cursor): + cursor.execute("""select Strain.Name + from Strain, StrainXRef, InbredSet + where Strain.Id = StrainXRef.StrainId and + StrainXRef.InbredSetId = InbredSet.Id + and InbredSet.Name=%s; + """, "BXD") + + strains = [strain[0] for strain in cursor.fetchall()] + print("strains:", pf(strains)) + for strain in strains: + print(" -", strain) + + return strains + +def get_probeset_vals(cursor, dataset_name): + cursor.execute(""" select ProbeSet.Id, ProbeSet.Name + from ProbeSetXRef, + ProbeSetFreeze, + ProbeSet + where ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and + ProbeSetFreeze.Name = %s and + ProbeSetXRef.ProbeSetId = ProbeSet.Id; + """, dataset_name) + + probesets = cursor.fetchall() + + print("Fetched probesets") + + probeset_vals = collections.OrderedDict() + + for counter, probeset in enumerate(probesets): + cursor.execute(""" select Strain.Name, ProbeSetData.value + from ProbeSetData, ProbeSetXRef, ProbeSetFreeze, Strain + where ProbeSetData.Id = ProbeSetXRef.DataId + and ProbeSetData.StrainId = Strain.Id + and ProbeSetXRef.ProbeSetId = %s + and ProbeSetFreeze.Id = ProbeSetXRef.ProbeSetFreezeId + and ProbeSetFreeze.Name = %s; + """, (probeset[0], dataset_name)) + val_dic = collections.OrderedDict() + vals = cursor.fetchall() + for val in vals: + val_dic[val[0]] = val[1] + + probeset_vals[probeset[1]] = val_dic + show_progress("Querying DB", counter) + + return probeset_vals + +def trim_strains(strains, probeset_vals): + trimmed_strains = [] + #print("probeset_vals is:", pf(probeset_vals)) + first_probeset = list(probeset_vals.itervalues())[0] + print("\n**** first_probeset is:", pf(first_probeset)) + for strain in strains: + print("\n**** strain is:", pf(strain)) + if strain in first_probeset: + trimmed_strains.append(strain) + print("trimmed_strains:", pf(trimmed_strains)) + return trimmed_strains + +def write_data_matrix_file(strains, probeset_vals, filename): + with open(filename, "wb") as fh: + csv_writer = csv.writer(fh, delimiter=",", quoting=csv.QUOTE_ALL) + #print("strains is:", pf(strains)) + csv_writer.writerow(['ID'] + strains) + for counter, probeset in enumerate(probeset_vals): + row_data = [probeset] + for strain in strains: + #print("probeset is: ", pf(probeset_vals[probeset])) + row_data.append(probeset_vals[probeset][strain]) + #print("row_data is: ", pf(row_data)) + csv_writer.writerow(row_data) + show_progress("Writing", counter) + +def main(): + filename = os.path.expanduser("~/gene/wqflask/maintenance/" + + "ProbeSetFreezeId_210_FullName_Eye_AXBXA_Illumina_V6.2" + + "(Oct08)_RankInv_Beta.txt") + dataset_name = "Eye_AXBXA_1008_RankInv" + + cursor = get_cursor() + strains = get_strains(cursor) + print("Getting probset_vals") + probeset_vals = get_probeset_vals(cursor, dataset_name) + print("Finished getting probeset_vals") + trimmed_strains = trim_strains(strains, probeset_vals) + write_data_matrix_file(trimmed_strains, probeset_vals, filename) + +if __name__ == '__main__': + main() diff --git a/wqflask/maintenance/print_benchmark.py b/wqflask/maintenance/print_benchmark.py new file mode 100644 index 00000000..540e0904 --- /dev/null +++ b/wqflask/maintenance/print_benchmark.py @@ -0,0 +1,43 @@ +#!/usr/bin/python + +from __future__ import absolute_import, print_function, division + +import time + +from pprint import pformat as pf + + +class TheCounter(object): + Counters = {} + + def __init__(self): + start_time = time.time() + for counter in range(170000): + self.print_it(counter) + self.time_took = time.time() - start_time + TheCounter.Counters[self.__class__.__name__] = self.time_took + +class PrintAll(TheCounter): + def print_it(self, counter): + print(counter) + +class PrintSome(TheCounter): + def print_it(self, counter): + if counter % 1000 == 0: + print(counter) + +class PrintNone(TheCounter): + def print_it(self, counter): + pass + + +def new_main(): + print("Running new_main") + tests = [PrintAll, PrintSome, PrintNone] + for test in tests: + test() + + print(pf(TheCounter.Counters)) + +if __name__ == '__main__': + new_main()
\ No newline at end of file diff --git a/wqflask/maintenance/quick_search_table.py b/wqflask/maintenance/quick_search_table.py new file mode 100644 index 00000000..b07e7656 --- /dev/null +++ b/wqflask/maintenance/quick_search_table.py @@ -0,0 +1,503 @@ +"""Creates a table used for the quick search feature. + +One column contains the terms to match the user's search against. Another contains the result +fields in json format + +Results will be returned for each of several trait types: mRNA assays, phenotypes, genotypes, and +(maybe later) genes + +For each trait type, the results for each species should be given This table will then list +each trait, its dataset, and several columns determined by its trait type (phenotype, genotype, etc) + +""" + +from __future__ import print_function, division, absolute_import + +import sys +sys.path.append("../../..") + +import simplejson as json + +import sqlalchemy as sa +from sqlalchemy.orm import scoped_session, sessionmaker +from sqlalchemy.ext.declarative import declarative_base + +#from pprint import pformat as pf + +import zach_settings as settings + +Engine = sa.create_engine(settings.SQLALCHEMY_DATABASE_URI, + #encoding='utf-8', + #client_encoding='utf-8', + #echo="debug",w + ) + +Session = scoped_session(sessionmaker(bind=Engine)) #, extension=VersionedListener())) + +Base = declarative_base(bind=Engine) +Metadata = sa.MetaData() +Metadata.bind = Engine + +class PublishXRef(Base): + """Class that corresponds with the PublishXRef table in the database. + + The PublishXRef table links phenotype traits and their publications. + + This class is used to add phenotype traits to the quick search table. + + """ + + __tablename__ = 'PublishXRef' + + Id = sa.Column(sa.Integer, primary_key=True) + InbredSetId = sa.Column(sa.Integer, primary_key=True) + PhenotypeId = sa.Column(sa.Integer) + PublicationId = sa.Column(sa.Integer) + DataId = sa.Column(sa.Integer) + Locus = sa.Column(sa.Text) + LRS = sa.Column(sa.Float) + additive = sa.Column(sa.Float) + Sequence = sa.Column(sa.Integer) + comments = sa.Column(sa.Text) + + @classmethod + def run(cls): + """Connects to database and inserts phenotype trait info into the Quicksearch table.""" + conn = Engine.connect() + counter = 0 + for pub_row in page_query(Session.query(cls)): #all() + values = {} + values['table_name'] = cls.__tablename__ + values['the_key'] = json.dumps([pub_row.Id, pub_row.InbredSetId]) + values['terms'] = cls.get_unique_terms(pub_row.Id, pub_row.InbredSetId) + print("terms is:", values['terms']) + values['result_fields'] = cls.get_result_fields(pub_row.Id, pub_row.InbredSetId) + ins = QuickSearch.insert().values(**values) + conn.execute(ins) + counter += 1 + print("Done:", counter) + + @staticmethod + def get_unique_terms(publishxref_id, inbredset_id): + """Finds unique terms for each item in the PublishXRef table to match a query against""" + results = Session.query( + "pre_publication_description", + "post_publication_description", + "pre_publication_abbreviation", + "post_publication_abbreviation", + "publication_title" + ).from_statement( + "SELECT Phenotype.Pre_publication_description as pre_publication_description, " + "Phenotype.Post_publication_description as post_publication_description, " + "Phenotype.Pre_publication_abbreviation as pre_publication_abbreviation, " + "Phenotype.Post_publication_abbreviation as post_publication_abbreviation, " + "Publication.Title as publication_title " + "FROM Phenotype, Publication, PublishXRef " + "WHERE PublishXRef.Id = :publishxref_id and " + "PublishXRef.InbredSetId = :inbredset_id and " + "PublishXRef.PhenotypeId = Phenotype.Id and " + "PublishXRef.PublicationId = Publication.Id ").params(publishxref_id=publishxref_id, + inbredset_id=inbredset_id).all() + + unique = set() + for item in results[0]: + #print("locals:", locals()) + if not item: + continue + for token in item.split(): + if token.startswith(('(','[')): + token = token[1:] + if token.endswith((')', ']')): + token = token[:-1] + if token.endswith(';'): + token = token[:-1] + if len(token) > 2: + try: + # This hopefully ensures that the token is utf-8 + token = token.encode('utf-8') + print(" ->", token) + except UnicodeDecodeError: + print("\n-- UDE \n") + # Can't get it into utf-8, we won't use it + continue + + unique.add(token) + #print("\nUnique terms are: {}\n".format(unique)) + return " ".join(unique) + + @staticmethod + def get_result_fields(publishxref_id, inbredset_id): + """Gets the result fields (columns) that appear on the result page as a json string""" + results = Session.query( + "phenotype_id", + "species", + "group_name", + "description", + "lrs", + "publication_id", + "pubmed_id", + "year", + "authors" + ).from_statement( + "SELECT PublishXRef.PhenotypeId as phenotype_id, " + "Species.Name as species, " + "InbredSet.Name as group_name, " + "Phenotype.Original_description as description, " + "PublishXRef.LRS as lrs, " + "PublishXRef.PublicationId as publication_id, " + "Publication.PubMed_ID as pubmed_id, " + "Publication.Year as year, " + "Publication.Authors as authors " + "FROM PublishXRef, " + "Phenotype, " + "Publication, " + "InbredSet, " + "Species " + "WHERE PublishXRef.Id = :publishxref_id and " + "PublishXRef.InbredSetId = :inbredset_id and " + "PublishXRef.PhenotypeId = Phenotype.Id and " + "PublishXRef.PublicationId = Publication.Id and " + "InbredSet.Id = :inbredset_id and " + "Species.Id = InbredSet.SpeciesId ").params(publishxref_id=publishxref_id, + inbredset_id=inbredset_id).all() + + assert len(set(result for result in results)) == 1, "Different results or no results" + + result = results[0] + result = row2dict(result) + try: + json_results = json.dumps(result, sort_keys=True) + except UnicodeDecodeError: + print("\n\nTrying to massage unicode\n\n") + for key, value in result.iteritems(): + print("\tkey is:", key) + print("\tvalue is:", value) + if isinstance(value, basestring): + result[key] = value.decode('utf-8', errors='ignore') + json_results = json.dumps(result, sort_keys=True) + + return json_results + + +class GenoXRef(Base): + """Class that corresponds with the GenoXRef table in the database. + + The GenoXRef table links genotype traits and their data. + + This class is used to add genotype traits to the quick search table. + + """ + + __tablename__ = 'GenoXRef' + + GenoFreezeId = sa.Column(sa.Integer, primary_key=True) + GenoId = sa.Column(sa.Integer, primary_key=True) + DataId = sa.Column(sa.Integer) + cM = sa.Column(sa.Float) + Used_for_mapping = sa.Column(sa.Text) + + @classmethod + def run(cls): + """Connects to database and inserts genotype trait info into the Quicksearch table.""" + conn = Engine.connect() + counter = 0 + for item in page_query(Session.query(cls)): #all() + values = {} + values['table_name'] = cls.__tablename__ + values['the_key'] = json.dumps([item.GenoId, item.GenoFreezeId]) + values['terms'] = cls.get_unique_terms(item.GenoId) + print("terms is:", values['terms']) + if values['terms']: + values['result_fields'] = cls.get_result_fields(item.GenoId, item.GenoFreezeId) + ins = QuickSearch.insert().values(**values) + conn.execute(ins) + counter += 1 + print("Done:", counter) + + @staticmethod + def get_unique_terms(geno_id): + """Finds unique terms for each item in the GenoXRef table to match a query against""" + print("geno_id: ", geno_id) + results = Session.query( + "name", + "marker_name" + ).from_statement( + "SELECT Geno.Name as name, " + "Geno.Marker_Name as marker_name " + "FROM Geno " + "WHERE Geno.Id = :geno_id ").params(geno_id=geno_id).all() + + unique = set() + if len(results): + for item in results[0]: + #print("locals:", locals()) + if not item: + continue + for token in item.split(): + if len(token) > 2: + try: + # This hopefully ensures that the token is utf-8 + token = token.encode('utf-8') + print(" ->", token) + except UnicodeDecodeError: + print("\n-- UDE \n") + # Can't get it into utf-8, we won't use it + continue + + unique.add(token) + return " ".join(unique) + + + @staticmethod + def get_result_fields(geno_id, dataset_id): + """Gets the result fields (columns) that appear on the result page as a json string""" + results = Session.query( + "name", + "marker_name", + "group_name", + "species", + "dataset", + "dataset_name", + "chr", "mb", + "source" + ).from_statement( + "SELECT Geno.Name as name, " + "Geno.Marker_Name as marker_name, " + "InbredSet.Name as group_name, " + "Species.Name as species, " + "GenoFreeze.Name as dataset, " + "GenoFreeze.FullName as dataset_name, " + "Geno.Chr as chr, " + "Geno.Mb as mb, " + "Geno.Source as source " + "FROM Geno, " + "GenoXRef, " + "GenoFreeze, " + "InbredSet, " + "Species " + "WHERE Geno.Id = :geno_id and " + "GenoXRef.GenoId = Geno.Id and " + "GenoFreeze.Id = :dataset_id and " + "GenoXRef.GenoFreezeId = GenoFreeze.Id and " + "InbredSet.Id = GenoFreeze.InbredSetId and " + "InbredSet.SpeciesId = Species.Id ").params(geno_id=geno_id, + dataset_id=dataset_id).all() + assert len(set(result for result in results)) == 1, "Different results" + + result = results[0] + result = row2dict(result) + try: + json_results = json.dumps(result, sort_keys=True) + except UnicodeDecodeError: + print("\n\nTrying to massage unicode\n\n") + for key, value in result.iteritems(): + print("\tkey is:", key) + print("\tvalue is:", value) + if isinstance(value, basestring): + result[key] = value.decode('utf-8', errors='ignore') + json_results = json.dumps(result, sort_keys=True) + + return json_results + +class ProbeSetXRef(Base): + """Class that corresponds with the ProbeSetXRef table in the database. + + The ProbeSetXRef table links mRNA expression traits and their sample data. + + This class is used to add mRNA expression traits to the quick search table. + + """ + + __tablename__ = 'ProbeSetXRef' + + ProbeSetFreezeId = sa.Column(sa.Integer, primary_key=True) + ProbeSetId = sa.Column(sa.Integer, primary_key=True) + DataId = sa.Column(sa.Integer, unique=True) + Locus_old = sa.Column(sa.Text) + LRS_old = sa.Column(sa.Float) + pValue_old = sa.Column(sa.Float) + mean = sa.Column(sa.Float) + se = sa.Column(sa.Float) + Locus = sa.Column(sa.Text) + LRS = sa.Column(sa.Float) + pValue = sa.Column(sa.Float) + additive = sa.Column(sa.Float) + h2 = sa.Column(sa.Float) + + @classmethod + def run(cls): + """Connects to db and inserts mRNA expression trait info into the Quicksearch table.""" + conn = Engine.connect() + counter = 0 + for ps_row in page_query(Session.query(cls)): #all() + values = {} + values['table_name'] = cls.__tablename__ + values['the_key'] = json.dumps([ps_row.ProbeSetId, ps_row.ProbeSetFreezeId]) + values['terms'] = cls.get_unique_terms(ps_row.ProbeSetId) + print("terms is:", values['terms']) + values['result_fields'] = cls.get_result_fields(ps_row.ProbeSetId, + ps_row.ProbeSetFreezeId) + if values['result_fields'] == None: + continue + ins = QuickSearch.insert().values(**values) + conn.execute(ins) + counter += 1 + print("Done:", counter) + + @staticmethod + def get_unique_terms(probeset_id): + """Finds unique terms for each item in the ProbeSetXRef table to match a query against""" + results = Session.query( + "name", + "symbol", + "description", + "alias" + ).from_statement( + "SELECT ProbeSet.Name as name, " + "ProbeSet.Symbol as symbol, " + "ProbeSet.description as description, " + "ProbeSet.alias as alias " + "FROM ProbeSet " + "WHERE ProbeSet.Id = :probeset_id ").params(probeset_id=probeset_id).all() + + unique = set() + if len(results): + for item in results[0]: + if not item: + continue + for token in item.split(): + if token.startswith(('(','[')): + token = token[1:] + if token.endswith((')', ']')): + token = token[:-1] + if token.endswith(';'): + token = token[:-1] + if len(token) > 2: + try: + # This hopefully ensures that the token is utf-8 + token = token.encode('utf-8') + print(" ->", token) + except UnicodeDecodeError: + print("\n-- UDE \n") + # Can't get it into utf-8, we won't use it + continue + + unique.add(token) + return " ".join(unique) + + + @staticmethod + def get_result_fields(probeset_id, dataset_id): + """Gets the result fields (columns) that appear on the result page as a json string""" + print("probeset_id: ", probeset_id) + print("dataset_id: ", dataset_id) + results = Session.query( + "name", + "species", + "group_name", + "dataset", + "dataset_name", + "symbol", + "description", + "chr", "mb", + "lrs", "mean", + "genbank_id", + "gene_id", + "chip_id", + "chip_name" + ).from_statement( + "SELECT ProbeSet.Name as name, " + "Species.Name as species, " + "InbredSet.Name as group_name, " + "ProbeSetFreeze.Name as dataset, " + "ProbeSetFreeze.FullName as dataset_name, " + "ProbeSet.Symbol as symbol, " + "ProbeSet.description as description, " + "ProbeSet.Chr as chr, " + "ProbeSet.Mb as mb, " + "ProbeSetXRef.LRS as lrs, " + "ProbeSetXRef.mean as mean, " + "ProbeSet.GenbankId as genbank_id, " + "ProbeSet.GeneId as gene_id, " + "ProbeSet.ChipId as chip_id, " + "GeneChip.Name as chip_name " + "FROM ProbeSet, " + "ProbeSetXRef, " + "ProbeSetFreeze, " + "ProbeFreeze, " + "InbredSet, " + "Species, " + "GeneChip " + "WHERE ProbeSetXRef.ProbeSetId = :probeset_id and " + "ProbeSetXRef.ProbeSetFreezeId = :dataset_id and " + "ProbeSetXRef.ProbeSetId = ProbeSet.Id and " + "ProbeSet.ChipId = GeneChip.Id and " + "ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and " + "ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and " + "ProbeFreeze.InbredSetId = InbredSet.Id and " + "InbredSet.SpeciesId = Species.Id ").params(probeset_id=probeset_id, + dataset_id=dataset_id).all() + + if len(set(result for result in results)) != 1: + return None + + result = results[0] + result = row2dict(result) + try: + json_results = json.dumps(result, sort_keys=True) + except UnicodeDecodeError: + print("\n\nTrying to massage unicode\n\n") + for key, value in result.iteritems(): + print("\tkey is:", key) + print("\tvalue is:", value) + if isinstance(value, basestring): + result[key] = value.decode('utf-8', errors='ignore') + json_results = json.dumps(result, sort_keys=True) + + return json_results + +QuickSearch = sa.Table("QuickSearch", Metadata, + # table_name is the table that item is inserted from + sa.Column('table_name', sa.String(15), + primary_key=True, nullable=False, autoincrement=False), + sa.Column('the_key', sa.String(30), + primary_key=True, nullable=False, autoincrement=False), # key in database table + sa.Column('terms', sa.Text), # terms to compare search string with + sa.Column('result_fields', sa.Text), # json + mysql_engine = 'MyISAM', + ) + +#QuickSearch.drop(Engine, checkfirst=True) +#Metadata.create_all(Engine) + + +def row2dict(row): + """From http://stackoverflow.com/a/2848519/1175849""" + return dict(zip(row.keys(), row)) + + +def page_query(query): + """From http://stackoverflow.com/a/1217947/1175849""" + offset = 0 + while True: + rrr = False + for elem in query.limit(1000).offset(offset): + rrr = True + yield elem + offset += 1000 + if not rrr: + break + + +def main(): + """Populate the QuickSearch table that is used with the quick search features. + + Add all items from the ProbeSetXRef, GenoXRef, and PublishXRef tables to the QuickSearch tables. + + """ + ProbeSetXRef.run() + #GenoXRef.run() + #PublishXRef.run() + +if __name__ == "__main__": + main()
\ No newline at end of file diff --git a/wqflask/other_config/nginx.conf b/wqflask/other_config/nginx-old.conf index 65ee768c..65ee768c 100644 --- a/wqflask/other_config/nginx.conf +++ b/wqflask/other_config/nginx-old.conf diff --git a/wqflask/other_config/pylintrc b/wqflask/other_config/pylintrc new file mode 100644 index 00000000..b23af7a4 --- /dev/null +++ b/wqflask/other_config/pylintrc @@ -0,0 +1,264 @@ +[MASTER] + +# Specify a configuration file. +#rcfile= + +# Python code to execute, usually for sys.path manipulation such as +# pygtk.require(). +#init-hook= + +# Profiled execution. +profile=no + +# Add files or directories to the blacklist. They should be base names, not +# paths. +ignore=CVS + +# Pickle collected data for later comparisons. +persistent=yes + +# List of plugins (as comma separated values of python modules names) to load, +# usually to register additional checkers. +load-plugins= + + +[MESSAGES CONTROL] + +# Enable the message, report, category or checker with the given id(s). You can +# either give multiple identifier separated by comma (,) or put this option +# multiple time. See also the "--disable" option for examples. +#enable= + +# Disable the message, report, category or checker with the given id(s). You +# can either give multiple identifiers separated by comma (,) or put this +# option multiple times (only on the command line, not in the configuration +# file where it should appear only once).You can also use "--disable=all" to +# disable everything first and then reenable specific checks. For example, if +# you want to run only the similarities checker, you can use "--disable=all +# --enable=similarities". If you want to run only the classes checker, but have +# no Warning level messages displayed, use"--disable=all --enable=classes +# --disable=W" +disable=no-init, star-args, no-member, import-error + + +[REPORTS] + +# Set the output format. Available formats are text, parseable, colorized, msvs +# (visual studio) and html. You can also give a reporter class, eg +# mypackage.mymodule.MyReporterClass. +output-format=text + +# Include message's id in output +include-ids=no + +# Include symbolic ids of messages in output +symbols=no + +# Put messages in a separate file for each module / package specified on the +# command line instead of printing them on stdout. Reports (if any) will be +# written in a file name "pylint_global.[txt|html]". +files-output=no + +# Tells whether to display a full report or only the messages +reports=yes + +# Python expression which should return a note less than 10 (10 is the highest +# note). You have access to the variables errors warning, statement which +# respectively contain the number of errors / warnings messages and the total +# number of statements analyzed. This is used by the global evaluation report +# (RP0004). +evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10) + +# Add a comment according to your evaluation note. This is used by the global +# evaluation report (RP0004). +comment=no + + +[SIMILARITIES] + +# Minimum lines number of a similarity. +min-similarity-lines=4 + +# Ignore comments when computing similarities. +ignore-comments=yes + +# Ignore docstrings when computing similarities. +ignore-docstrings=yes + +# Ignore imports when computing similarities. +ignore-imports=no + + +[VARIABLES] + +# Tells whether we should check for unused import in __init__ files. +init-import=no + +# A regular expression matching the beginning of the name of dummy variables +# (i.e. not used). +dummy-variables-rgx=_|dummy + +# List of additional names supposed to be defined in builtins. Remember that +# you should avoid to define new builtins when possible. +additional-builtins= + + +[BASIC] + +# Required attributes for module, separated by a comma +required-attributes= + +# List of builtins function names that should not be used, separated by a comma +bad-functions=map,filter,apply,input + +# Regular expression which should only match correct module names +module-rgx=(([a-z_][a-z0-9_]*)|([A-Z][a-zA-Z0-9]+))$ + +# Regular expression which should only match correct module level names +const-rgx=(([A-Z_][A-Za-z0-9_]*)|(__.*__))$ + +# Regular expression which should only match correct class names +class-rgx=[A-Z_][a-zA-Z0-9]+$ + +# Regular expression which should only match correct function names +function-rgx=[a-z_][a-z0-9_]{2,30}$ + +# Regular expression which should only match correct method names +method-rgx=[a-z_][a-z0-9_]{2,30}$ + +# Regular expression which should only match correct instance attribute names +attr-rgx=[a-z_][a-z0-9_]{2,30}$ + +# Regular expression which should only match correct argument names +argument-rgx=[a-z_][a-z0-9_]{2,30}$ + +# Regular expression which should only match correct variable names +variable-rgx=[a-z_][a-z0-9_]{2,30}$ + +# Regular expression which should only match correct list comprehension / +# generator expression variable names +inlinevar-rgx=[A-Za-z_][A-Za-z0-9_]*$ + +# Good variable names which should always be accepted, separated by a comma +good-names=i,j,k,ex,Run,_ + +# Bad variable names which should always be refused, separated by a comma +bad-names=foo,bar,baz,toto,tutu,tata + +# Regular expression which should only match functions or classes name which do +# not require a docstring +no-docstring-rgx=__.*__ + + +[FORMAT] + +# Maximum number of characters on a single line. +max-line-length=100 + +# Maximum number of lines in a module +max-module-lines=1000 + +# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1 +# tab). +indent-string=' ' + + +[MISCELLANEOUS] + +# List of note tags to take in consideration, separated by a comma. +notes=FIXME,XXX,TODO + + +[TYPECHECK] + +# Tells whether missing members accessed in mixin class should be ignored. A +# mixin class is detected if its name ends with "mixin" (case insensitive). +ignore-mixin-members=yes + +# List of classes names for which member attributes should not be checked +# (useful for classes with attributes dynamically set). +ignored-classes=SQLObject + +# When zope mode is activated, add a predefined set of Zope acquired attributes +# to generated-members. +zope=no + +# List of members which are set dynamically and missed by pylint inference +# system, and so shouldn't trigger E0201 when accessed. Python regular +# expressions are accepted. +generated-members=REQUEST,acl_users,aq_parent + + +[DESIGN] + +# Maximum number of arguments for function / method +max-args=5 + +# Argument names that match this expression will be ignored. Default to name +# with leading underscore +ignored-argument-names=_.* + +# Maximum number of locals for function / method body +max-locals=15 + +# Maximum number of return / yield for function / method body +max-returns=6 + +# Maximum number of branch for function / method body +max-branchs=12 + +# Maximum number of statements in function / method body +max-statements=50 + +# Maximum number of parents for a class (see R0901). +max-parents=7 + +# Maximum number of attributes for a class (see R0902). +max-attributes=7 + +# Minimum number of public methods for a class (see R0903). +min-public-methods=2 + +# Maximum number of public methods for a class (see R0904). +max-public-methods=20 + + +[IMPORTS] + +# Deprecated modules which should not be used, separated by a comma +deprecated-modules=regsub,string,TERMIOS,Bastion,rexec + +# Create a graph of every (i.e. internal and external) dependencies in the +# given file (report RP0402 must not be disabled) +import-graph= + +# Create a graph of external dependencies in the given file (report RP0402 must +# not be disabled) +ext-import-graph= + +# Create a graph of internal dependencies in the given file (report RP0402 must +# not be disabled) +int-import-graph= + + +[CLASSES] + +# List of interface methods to ignore, separated by a comma. This is used for +# instance to not check methods defines in Zope's Interface base class. +ignore-iface-methods=isImplementedBy,deferred,extends,names,namesAndDescriptions,queryDescriptionFor,getBases,getDescriptionFor,getDoc,getName,getTaggedValue,getTaggedValueTags,isEqualOrExtendedBy,setTaggedValue,isImplementedByInstancesOf,adaptWith,is_implemented_by + +# List of method names used to declare (i.e. assign) instance attributes. +defining-attr-methods=__init__,__new__,setUp + +# List of valid names for the first argument in a class method. +valid-classmethod-first-arg=cls + +# List of valid names for the first argument in a metaclass class method. +valid-metaclass-classmethod-first-arg=mcs + + +[EXCEPTIONS] + +# Exceptions that will emit a warning when being caught. Defaults to +# "Exception" +overgeneral-exceptions=Exception diff --git a/wqflask/other_config/wqflask-nginx.conf b/wqflask/other_config/wqflask-nginx.conf new file mode 100644 index 00000000..4e6fd0d9 --- /dev/null +++ b/wqflask/other_config/wqflask-nginx.conf @@ -0,0 +1,83 @@ +server { + # Modeled after http://flask.pocoo.org/docs/deploying/wsgi-standalone/ + listen 80; + + server_name gn2python.genenetwork.org; + + access_log /var/log/nginx/access.log; + error_log /var/log/nginx/error.log; + + location ^~ /css/ { + root /gene/wqflask/wqflask/static/; + } + + location ^~ /javascript/ { + root /gene/wqflask/wqflask/static/; + } + +# location ^~ /image/ { +# root /gene/wqflask/wqflask/static/; +# } + + location ^~ /images/ { + root /gene/wqflask/wqflask/static/; + } + + ### New - added by Sam + #location ^~ /static/ { + # root /gene/wqflask/wqflask/static/; + #} + + location / { + proxy_pass http://127.0.0.1:5000/; + proxy_redirect off; + + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + + proxy_read_timeout 40m; + } +} + +server { + # Modeled after http://flask.pocoo.org/docs/deploying/wsgi-standalone/ + listen 80; + + server_name gn2python_lei.genenetwork.org; + + access_log /var/log/nginx/lei_access.log; + error_log /var/log/nginx/lei_error.log; + + location ^~ /css/ { + root /gene/wqflask/wqflask/static/; + } + + location ^~ /javascript/ { + root /gene/wqflask/wqflask/static/; + } + +# location ^~ /image/ { +# root /gene/wqflask/wqflask/static/; +# } + + location ^~ /images/ { + root /gene/wqflask/wqflask/static/; + } + + ### New - added by Sam + #location ^~ /static/ { + # root /gene/wqflask/wqflask/static/; + #} + + location / { + proxy_pass http://127.0.0.1:5001/; + proxy_redirect off; + + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + + proxy_read_timeout 40m; + } +} diff --git a/wqflask/requirements.txt b/wqflask/requirements.txt index ee36bb84..6b07b380 100644 --- a/wqflask/requirements.txt +++ b/wqflask/requirements.txt @@ -6,17 +6,10 @@ PyYAML==3.10 #Reaper==1.0 SQLAlchemy==0.7.9 Werkzeug==0.8.3 -ipython==0.13.1 logging-tree==1.1 -logilab-astng==0.24.1 -logilab-common==0.58.3 -mercurial==2.4.2 nose==1.2.1 -numarray==1.5.2 numpy==1.6.2 pp==1.6.3 -pylint==0.26.0 -readline==6.2.4.1 requests==0.13.3 rpy2==2.3.1 scipy==0.11.0 diff --git a/wqflask/runserver.py b/wqflask/runserver.py index 2a75faeb..1cf38f8e 100644 --- a/wqflask/runserver.py +++ b/wqflask/runserver.py @@ -29,4 +29,5 @@ logging_tree.printout() app.run(host='0.0.0.0', use_debugger=False, + threaded=True, use_reloader=True) diff --git a/wqflask/secure_server.py b/wqflask/secure_server.py new file mode 100644 index 00000000..3487f35b --- /dev/null +++ b/wqflask/secure_server.py @@ -0,0 +1,39 @@ +from __future__ import print_function, division, absolute_import + +from wqflask import app + +from flask import Flask, render_template + + +# Setup mail +from flask.ext.mail import Mail +mail = Mail(app) + + +from wqflask.model import * + +# Create a user to test with +##@app.before_first_request +#def create_user(): +# db.create_all() +# user_datastore.create_user(email='matt@example.com', password='notebook') +# db.session.commit() + + +import logging +file_handler = logging.FileHandler(app.config['LOGFILE']) +file_handler.setLevel(logging.DEBUG) +app.logger.addHandler(file_handler) + +import logging_tree +logging_tree.printout() + +#print("app.config is:", app.config) + +if __name__ == '__main__': + #create_user() + app.run(host='0.0.0.0', + port=app.config['SERVER_PORT'], + use_debugger=False, + threaded=True, + use_reloader=True) diff --git a/wqflask/utility/benchmark.py b/wqflask/utility/benchmark.py new file mode 100644 index 00000000..182187ae --- /dev/null +++ b/wqflask/utility/benchmark.py @@ -0,0 +1,45 @@ +from __future__ import print_function, division, absolute_import + +import collections +import inspect +import time + + +class Bench(object): + entries = collections.OrderedDict() + + def __init__(self, name=None): + self.name = name + + def __enter__(self): + if self.name: + print("Starting benchmark: %s" % (self.name)) + else: + print("Starting benchmark at: %s [%i]" % (inspect.stack()[1][3], inspect.stack()[1][2])) + self.start_time = time.time() + + def __exit__(self, type, value, traceback): + if self.name: + name = self.name + else: + name = "That" + + time_taken = time.time() - self.start_time + print(" %s took: %f seconds" % (name, (time_taken))) + + if self.name: + Bench.entries[self.name] = Bench.entries.get(self.name, 0) + time_taken + + + @classmethod + def report(cls): + total_time = sum((time_taken for time_taken in cls.entries.itervalues())) + print("\nTiming report\n") + for name, time_taken in cls.entries.iteritems(): + percent = int(round((time_taken/total_time) * 100)) + print("[{}%] {}: {}".format(percent, name, time_taken)) + print() + + def reset(cls): + """Reset the entries""" + cls.entries = collections.OrderedDict()
\ No newline at end of file diff --git a/wqflask/utility/formatting.py b/wqflask/utility/formatting.py index 52173417..e53dda22 100644 --- a/wqflask/utility/formatting.py +++ b/wqflask/utility/formatting.py @@ -10,6 +10,14 @@ def numify(number, singular=None, plural=None): >>> numify(9, 'book', 'books') 'nine books' + You can add capitalize to change the capitalization + >>> numify(9, 'book', 'books').capitalize() + 'Nine books' + + Or capitalize every word using title + >>> numify(9, 'book', 'books').title() + 'Nine Books' + >>> numify(15) '15' @@ -107,3 +115,8 @@ def commify(n): if cents: out += '.' + cents return out + + +if __name__ == '__main__': + import doctest + doctest.testmod() diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py new file mode 100644 index 00000000..28242c27 --- /dev/null +++ b/wqflask/utility/helper_functions.py @@ -0,0 +1,18 @@ +from __future__ import absolute_import, print_function, division + +from base.trait import GeneralTrait +from base import data_set +from base.species import TheSpecies + + +def get_species_dataset_trait(self, start_vars): + #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype" + self.dataset = data_set.create_dataset(start_vars['dataset']) + self.species = TheSpecies(dataset=self.dataset) + self.this_trait = GeneralTrait(dataset=self.dataset.name, + name=start_vars['trait_id'], + cellid=None) + + #if read_genotype: + self.dataset.group.read_genotype_file() + #self.genotype = self.dataset.group.genotype diff --git a/wqflask/utility/temp_data.py b/wqflask/utility/temp_data.py new file mode 100644 index 00000000..004d45c6 --- /dev/null +++ b/wqflask/utility/temp_data.py @@ -0,0 +1,25 @@ +from __future__ import print_function, division, absolute_import +from redis import Redis + +import simplejson as json + +class TempData(object): + + def __init__(self, temp_uuid): + self.temp_uuid = temp_uuid + self.redis = Redis() + self.key = "tempdata:{}".format(self.temp_uuid) + + def store(self, field, value): + self.redis.hset(self.key, field, value) + self.redis.expire(self.key, 60*15) # Expire in 15 minutes + + def get_all(self): + return self.redis.hgetall(self.key) + + +if __name__ == "__main__": + redis = Redis() + for key in redis.keys(): + for field in redis.hkeys(key): + print("{}.{}={}".format(key, field, redis.hget(key, field))) diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py index ff018fdc..8e648c63 100644 --- a/wqflask/wqflask/__init__.py +++ b/wqflask/wqflask/__init__.py @@ -11,6 +11,8 @@ from utility import formatting app = Flask(__name__) +app.config.SECURITY_PASSWORD_HASH='bcrypt' + # See http://flask.pocoo.org/docs/config/#configuring-from-files app.config.from_object('cfg.default_settings') app.config.from_envvar('WQFLASK_SETTINGS') diff --git a/wqflask/wqflask/correlation/correlationFunction.py b/wqflask/wqflask/correlation/correlationFunction.py index 2c1870fe..7d4b58a9 100644 --- a/wqflask/wqflask/correlation/correlationFunction.py +++ b/wqflask/wqflask/correlation/correlationFunction.py @@ -31,7 +31,7 @@ import pp import string from utility import webqtlUtil -from base.webqtlTrait import GeneralTrait +from base.trait import GeneralTrait from dbFunction import webqtlDatabaseFunction diff --git a/wqflask/wqflask/correlation/correlation_plot.py b/wqflask/wqflask/correlation/correlation_plot.py new file mode 100644 index 00000000..c2b64d70 --- /dev/null +++ b/wqflask/wqflask/correlation/correlation_plot.py @@ -0,0 +1,53 @@ +#!/usr/bin/python + +from __future__ import print_function, division + +from base.trait import GeneralTrait +from base import data_set +from wqflask.show_trait.SampleList import SampleList + +class CorrelationPlot(object): + """Page that displays a correlation scatterplot with a line fitted to it""" + + def __init__(self, start_vars): + self.dataset1 = data_set.create_dataset(start_vars['dataset1']) + self.trait1 = GeneralTrait(dataset=self.dataset1.name, + name=start_vars['trait1']) + + self.dataset2 = data_set.create_dataset(start_vars['dataset2']) + self.trait2 = GeneralTrait(dataset=self.dataset2.name, + name=start_vars['trait2']) + + sample_names_1 = self.get_sample_names(self.dataset1) + sample_names_2 = self.get_sample_names(self.dataset2) + + self.samples_1 = self.get_samples(self.dataset1, sample_names_1, self.trait1) + self.samples_2 = self.get_samples(self.dataset2, sample_names_2, self.trait2) + + coords = {} + for sample in self.samples_1: + coords[sample.name] = (sample.val) + + + def get_sample_names(self, dataset): + if dataset.group.parlist: + sample_names = (dataset.group.parlist + + dataset.group.f1list + + dataset.group.samplelist) + elif dataset.group.f1list: + sample_names = dataset.group.f1list + dataset.group.samplelist + else: + sample_names = dataset.group.samplelist + + return sample_names + + + def get_samples(self, dataset, sample_names, trait): + samples = SampleList(dataset = dataset, + sample_names=sample_names, + this_trait=trait, + sample_group_type='primary', + header="%s Only" % (dataset.group.name)) + + return samples +
\ No newline at end of file diff --git a/wqflask/wqflask/correlation/CorrelationPage.py b/wqflask/wqflask/correlation/show_corr_results.py index f1dd96ef..1d0368cc 100644 --- a/wqflask/wqflask/correlation/CorrelationPage.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -27,7 +27,7 @@ # Refactored correlation calculation into smaller functions in preparation of # separating html from existing code -from __future__ import print_function +from __future__ import absolute_import, print_function, division import string from math import * @@ -46,14 +46,15 @@ import reaper from base import webqtlConfig from utility.THCell import THCell from utility.TDCell import TDCell -from base.webqtlTrait import GeneralTrait -from base.data_set import create_dataset +from base.trait import GeneralTrait +from base import data_set from base.templatePage import templatePage -from utility import webqtlUtil +from utility import webqtlUtil, helper_functions from dbFunction import webqtlDatabaseFunction import utility.webqtlUtil #this is for parallel computing only. -import correlationFunction +from wqflask.correlation import correlationFunction +from pprint import pformat as pf METHOD_SAMPLE_PEARSON = "1" METHOD_SAMPLE_RANK = "2" @@ -92,7 +93,8 @@ class Trait(object): def calculate_correlation(self, values, method): """Calculate the correlation value and p value according to the method specified""" - #ZS: This takes the list of values of the trait our selected trait is being correlated against and removes the values of the samples our trait has no value for + #ZS: This takes the list of values of the trait our selected trait is being correlated + #against and removes the values of the samples our trait has no value for #There's probably a better way of dealing with this, but I'll have to ask Christian updated_raw_values = [] updated_values = [] @@ -119,6 +121,7 @@ class Trait(object): if abs(self.correlation) >= 1.0: self.p_value = 0.0 else: + #Confirm that this division works after future import ZValue = 0.5*log((1.0+self.correlation)/(1.0-self.correlation)) ZValue = ZValue*sqrt(self.overlap-3) self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue))) @@ -128,10 +131,9 @@ class Trait(object): #XZ, 01/14/2009: This method is for parallel computing only. #XZ: It is supposed to be called when "Genetic Correlation, Pearson's r" (method 1) #XZ: or "Genetic Correlation, Spearman's rho" (method 2) is selected -def compute_corr( input_nnCorr, input_trait, input_list, computing_method): +def compute_corr(input_nnCorr, input_trait, input_list, computing_method): allcorrelations = [] - for line in input_list: tokens = line.split('","') tokens[-1] = tokens[-1][:-2] #remove the last " @@ -257,11 +259,11 @@ def auth_user_for_db(db, cursor, target_db_name, privilege, username): raise AuthException("The %s database you selected is not open to the public at this time, please go back and select other database." % indFullName) -class CorrelationPage(templatePage): +class CorrelationResults(object): corr_min_informative = 4 - PAGE_HEADING = "Correlation Table" + #PAGE_HEADING = "Correlation Table" #CORRELATION_METHODS = {"1" : "Genetic Correlation (Pearson's r)", # "2" : "Genetic Correlation (Spearman's rho)", # "3" : "SGO Literature Correlation", @@ -271,98 +273,101 @@ class CorrelationPage(templatePage): #RANK_ORDERS = {"1": 0, "2": 1, "3": 0, "4": 0, "5": 1} - def error(self, message, *args, **kw): - heading = heading or self.PAGE_HEADING - return templatePage.error(heading = heading, detail = [message], error=error) - - def __init__(self, fd): - #print("in CorrelationPage __init__ fd is:", pf(fd.__dict__)) - # Call the superclass constructor - - # Put everything in fd into self - self.__dict__.update(fd.__dict__) - - templatePage.__init__(self, fd) - - #print("in CorrelationPage __init__ now fd is:", pf(fd.__dict__)) - # Connect to the database - if not self.openMysql(): - return - - # Read the genotype from a file - if not fd.genotype: - fd.readGenotype() - - sample_list = get_sample_data(fd) - print("sample_list is", pf(sample_list)) - - # Whether the user chose BXD Only, Non-BXD Only, or All Strains - # (replace BXD with whatever the group/inbredset name is) - # "mdp" stands for "mouse diversity panel" This is outdated; it now represents any - # cases/strains from the non-primary group - mdp_choice = fd.MDPChoice if fd.allstrainlist else None - - self.species = get_species(fd, self.cursor) + #def error(self, message, *args, **kw): + # heading = heading or self.PAGE_HEADING + # return templatePage.error(heading = heading, detail = [message], error=error) + + def __init__(self, start_vars): + # get trait list from db (database name) + # calculate correlation with Base vector and targets + + #self.this_trait = GeneralTrait(dataset=self.dataset.name, + # name=start_vars['trait_id'], + # cellid=None) + + print("start_vars: ", pf(start_vars)) + + helper_functions.get_species_dataset_trait(self, start_vars) + self.dataset.group.read_genotype_file() + + self.samples = [] # Want only ones with values + self.vals = [] + + corr_samples_group = start_vars['corr_samples_group'] + + #The two if statements below append samples to the sample list based upon whether the user + #selected Primary Samples Only, Other Samples Only, or All Samples + + #If either BXD/whatever Only or All Samples, append all of that group's samplelist + if corr_samples_group != 'samples_other': + self.process_samples(start_vars, self.dataset.group.samplelist, ()) + + #If either Non-BXD/whatever or All Samples, get all samples from this_trait.data and + #exclude the primary samples (because they would have been added in the previous + #if statement if the user selected All Samples) + if corr_samples_group != 'samples_primary': + primary_samples = (self.dataset.group.parlist + + self.dataset.group.f1list + + self.dataset.group.samplelist) + self.process_samples(start_vars, self.this_trait.data.keys(), primary_samples) + + #for i, sample in enumerate(self.samples): + # print("{} : {}".format(sample, self.vals[i])) + + self.target_dataset = data_set.create_dataset(start_vars['corr_dataset']) + self.target_dataset.get_trait_data() + print("trait_list: {}".format(pf(self.target_dataset.trait_data))) + # Lei Yan todo + for trait, values in self.target_dataset.trait_data.iteritems(): + correlation = calCorrelation(values, ) #XZ, 09/18/2008: get all information about the user selected database. #target_db_name = fd.corr_dataset - self.target_db_name = fd.corr_dataset + self.target_db_name = start_vars['corr_dataset'] + # Zach said this is ok + # Auth if needed #try: - #print("target_db_name is:", target_db_name) - self.db = create_dataset(self.db_conn, self.target_db_name) - #except: - # detail = ["The database you just requested has not been established yet."] - # self.error(detail) - # return - - # Auth if needed - try: - auth_user_for_db(self.db, self.cursor, self.target_db_name, self.privilege, self.userName) - except AuthException as e: - detail = [e.message] - return self.error(detail) + # auth_user_for_db(self.db, self.cursor, self.target_db_name, self.privilege, self.userName) + #except AuthException as e: + # detail = [e.message] + # return self.error(detail) #XZ, 09/18/2008: filter out the strains that have no value. - self.sample_names, vals, vars, N = fd.informativeStrains(sample_list) + #self.sample_names, vals, vars, N = fd.informativeStrains(sample_list) - print("samplenames is:", pf(self.sample_names)) + #print("samplenames is:", pf(self.sample_names)) #CF - If less than a minimum number of strains/cases in common, don't calculate anything - if len(self.sample_names) < self.corr_min_informative: - detail = ['Fewer than %d strain data were entered for %s data set. No calculation of correlation has been attempted.' % (self.corr_min_informative, fd.RISet)] - self.error(heading=None, detail=detail) - - for key, value in self.__dict__.items(): - if key.startswith("corr"): - print("[red] %s - %s" % (key, value)) + #if len(self.sample_names) < self.corr_min_informative: + # detail = ['Fewer than %d strain data were entered for %s data set. No calculation of correlation has been attempted.' % (self.corr_min_informative, fd.RISet)] + # self.error(heading=None, detail=detail) #correlation_method = self.CORRELATION_METHODS[self.method] #rankOrder = self.RANK_ORDERS[self.method] # CF - Number of results returned # Todo: Get rid of self.returnNumber - self.returnNumber = self.corr_return_results - self.record_count = 0 + #self.record_count = 0 - myTrait = get_custom_trait(fd, self.cursor) + #myTrait = get_custom_trait(fd, self.cursor) # We will not get Literature Correlations if there is no GeneId because there is nothing # to look against - self.gene_id = int(fd.GeneId) + self.geneid = self.this_trait.geneid # We will not get Tissue Correlations if there is no gene symbol because there is nothing to look against - self.trait_symbol = myTrait.symbol + #self.trait_symbol = myTrait.symbol #XZ, 12/12/2008: if the species is rat or human, translate the geneid to mouse geneid - self.input_trait_mouse_gene_id = self.translateToMouseGeneID(self.species, self.gene_id) + self.input_trait_mouse_gene_id = self.translateToMouseGeneID(self.dataset.group.species, self.geneid) #XZ: As of Nov/13/2010, this dataset is 'UTHSC Illumina V6.2 RankInv B6 D2 average CNS GI average (May 08)' self.tissue_probeset_freeze_id = 1 - traitList = self.correlate(vals) + traitList = self.correlate() _log.info("Done doing correlation calculation") @@ -741,13 +746,52 @@ makeWebGestaltTree(thisForm, '%s', %d, 'edag_only.php'); else: self.dict['body'] = "" + def get_all_dataset_data(self): + + """ + SELECT ProbeSet.Name, T128.value, T129.value, T130.value, T131.value, T132.value, T134.value, T135.value, T138.value, T139.value, T140.value, T141.value, T142.value, T144 + .value, T145.value, T147.value, T148.value, T149.value, T487.value, T919.value, T920.value, T922.value + FROM (ProbeSet, ProbeSetXRef, ProbeSetFreeze) + left join ProbeSetData as T128 on T128.Id = ProbeSetXRef.DataId and T128.StrainId=128 + left join ProbeSetData as T129 on T129.Id = ProbeSetXRef.DataId and T129.StrainId=129 + left join ProbeSetData as T130 on T130.Id = ProbeSetXRef.DataId and T130.StrainId=130 + left join ProbeSetData as T131 on T131.Id = ProbeSetXRef.DataId and T131.StrainId=131 + left join ProbeSetData as T132 on T132.Id = ProbeSetXRef.DataId and T132.StrainId=132 + left join ProbeSetData as T134 on T134.Id = ProbeSetXRef.DataId and T134.StrainId=134 + left join ProbeSetData as T135 on T135.Id = ProbeSetXRef.DataId and T135.StrainId=135 + left join ProbeSetData as T138 on T138.Id = ProbeSetXRef.DataId and T138.StrainId=138 + left join ProbeSetData as T139 on T139.Id = ProbeSetXRef.DataId and T139.StrainId=139 + left join ProbeSetData as T140 on T140.Id = ProbeSetXRef.DataId and T140.StrainId=140 + left join ProbeSetData as T141 on T141.Id = ProbeSetXRef.DataId and T141.StrainId=141 + left join ProbeSetData as T142 on T142.Id = ProbeSetXRef.DataId and T142.StrainId=142 + left join ProbeSetData as T144 on T144.Id = ProbeSetXRef.DataId and T144.StrainId=144 + left join ProbeSetData as T145 on T145.Id = ProbeSetXRef.DataId and T145.StrainId=145 + left join ProbeSetData as T147 on T147.Id = ProbeSetXRef.DataId and T147.StrainId=147 + left join ProbeSetData as T148 on T148.Id = ProbeSetXRef.DataId and T148.StrainId=148 + left join ProbeSetData as T149 on T149.Id = ProbeSetXRef.DataId and T149.StrainId=149 + left join ProbeSetData as T487 on T487.Id = ProbeSetXRef.DataId and T487.StrainId=487 + left join ProbeSetData as T919 on T919.Id = ProbeSetXRef.DataId and T919.StrainId=919 + left join ProbeSetData as T920 on T920.Id = ProbeSetXRef.DataId and T920.StrainId=920 + left join ProbeSetData as T922 on T922.Id = ProbeSetXRef.DataId and T922.StrainId=922 + WHERE ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and + ProbeSetFreeze.Name = 'HC_M2_0606_P' and + ProbeSet.Id = ProbeSetXRef.ProbeSetId order by ProbeSet.Id + """ -############################# -# # -# CorrelationPage Functions # -# # -############################# + def process_samples(self, start_vars, sample_names, excluded_samples): + for sample in sample_names: + if sample not in excluded_samples: + value = start_vars['value:' + sample] + variance = start_vars['variance:' + sample] + if variance.strip().lower() == 'x': + variance = 0 + else: + variance = float(variance) + if value.strip().lower() != 'x': + self.samples.append(str(sample)) + self.vals.append(float(value)) + #self.variances.append(variance) def getSortByValue(self, calculationMethod): @@ -806,17 +850,16 @@ Resorting this table <br> Takes argument cursor which is a cursor object of any instance of a subclass of templatePage Used by correlationPage""" - query = 'SELECT Id, FullName FROM ProbeSetFreeze WHERE Name = "%s"' % target_db_name - self.cursor.execute(query) - result = self.cursor.fetchone() - Id = result[0] - FullName = result[1] - FullName = FullName.replace(' ','_') - FullName = FullName.replace('/','_') + trait_id, full_name = g.db.execute("""SELECT Id, FullName + FROM ProbeSetFreeze + WHERE Name = '%s'""" % target_db_name).fetchone() + for char in [' ', '/']: + full_name = full_name.replace(char, '_') + + file_name = 'ProbeSetFreezeId_' + str(trait_id) + '_FullName_' + full_name + '.txt' - FileName = 'ProbeSetFreezeId_' + str(Id) + '_FullName_' + FullName + '.txt' + return file_name - return FileName #XZ, 01/29/2009: I modified this function. @@ -835,26 +878,32 @@ Resorting this table <br> #XZ, 12/12/2008: if the species is rat or human, translate the geneid to mouse geneid #XZ, 12/12/2008: if the input geneid is 'None', return 0 #XZ, 12/12/2008: if the input geneid has no corresponding mouse geneid, return 0 - def translateToMouseGeneID (self, species, geneid): - mouse_geneid = 0; + def translateToMouseGeneID(self, species, geneid): + #mouse_geneid = 0 - #if input geneid is None, return 0. if not geneid: - return mouse_geneid + return 0 + + #self.id, self.name, self.fullname, self.shortname = g.db.execute(""" + # SELECT Id, Name, FullName, ShortName + # FROM %s + # WHERE public > %s AND + # (Name = '%s' OR FullName = '%s' OR ShortName = '%s') + # """ % (query_args)).fetchone() if species == 'mouse': mouse_geneid = geneid elif species == 'rat': - self.cursor.execute( "SELECT mouse FROM GeneIDXRef WHERE rat=%d" % int(geneid) ) - record = self.cursor.fetchone() - if record: - mouse_geneid = record[0] + mouse_geneid = g.db.execute( + """SELECT mouse FROM GeneIDXRef WHERE rat='%d'""", int(geneid)).fetchone().mouse + #if record: + # mouse_geneid = record[0] elif species == 'human': - self.cursor.execute( "SELECT mouse FROM GeneIDXRef WHERE human=%d" % int(geneid) ) - record = self.cursor.fetchone() - if record: - mouse_geneid = record[0] - + mouse_geneid = g.db.execute( + """SELECT mouse FROM GeneIDXRef WHERE human='%d'""", int(geneid)).fetchone().mouse + #if record: + # mouse_geneid = record[0] + print("mouse_geneid:", mouse_geneid) return mouse_geneid @@ -880,7 +929,6 @@ Resorting this table <br> except: return False - def fetchAllDatabaseData(self, species, GeneId, GeneSymbol, strains, db, method, returnNumber, tissueProbeSetFreezeId): StrainIds = [] @@ -920,32 +968,32 @@ Resorting this table <br> query += "WHERE PublishXRef.InbredSetId = PublishFreeze.InbredSetId and PublishFreeze.Name = '%s'" % (db.name, ) #XZ, 09/20/2008: extract literature correlation value together with gene expression values. #XZ, 09/20/2008: notice the difference between the code in next block. - elif tempTable: - # we can get a little performance out of selecting our LitCorr here - # but also we need to do this because we are unconcerned with probes that have no geneId associated with them - # as we would not have litCorr data. - - if method == "3": - query = "SELECT %s.Name, %s.value," % (db.type,tempTable) - dataStartPos = 2 - if method == "4" or method == "5": - query = "SELECT %s.Name, %s.Correlation, %s.PValue," % (db.type,tempTable, tempTable) - dataStartPos = 3 - - query += string.join(temp,', ') - query += ' FROM (%s, %sXRef, %sFreeze)' % (db.type, db.type, db.type) - if method == "3": - query += ' LEFT JOIN %s ON %s.GeneId2=ProbeSet.GeneId ' % (tempTable,tempTable) - if method == "4" or method == "5": - query += ' LEFT JOIN %s ON %s.Symbol=ProbeSet.Symbol ' % (tempTable,tempTable) - #XZ, 03/04/2009: Xiaodong changed Data to %sData and changed parameters from %(item,item, db.type,item,item) to %(db.type, item,item, db.type,item,item) - for item in StrainIdstep: - query += 'left join %sData as T%s on T%s.Id = %sXRef.DataId and T%s.StrainId=%s\n' %(db.type, item,item, db.type,item,item) - - if method == "3": - query += "WHERE ProbeSet.GeneId IS NOT NULL AND %s.value IS NOT NULL AND %sXRef.%sFreezeId = %sFreeze.Id and %sFreeze.Name = '%s' and %s.Id = %sXRef.%sId order by %s.Id" % (tempTable,db.type, db.type, db.type, db.type, db.name, db.type, db.type, db.type, db.type) - if method == "4" or method == "5": - query += "WHERE ProbeSet.Symbol IS NOT NULL AND %s.Correlation IS NOT NULL AND %sXRef.%sFreezeId = %sFreeze.Id and %sFreeze.Name = '%s' and %s.Id = %sXRef.%sId order by %s.Id" % (tempTable,db.type, db.type, db.type, db.type, db.name, db.type, db.type, db.type, db.type) + #elif tempTable: + # # we can get a little performance out of selecting our LitCorr here + # # but also we need to do this because we are unconcerned with probes that have no geneId associated with them + # # as we would not have litCorr data. + # + # if method == "3": + # query = "SELECT %s.Name, %s.value," % (db.type,tempTable) + # dataStartPos = 2 + # if method == "4" or method == "5": + # query = "SELECT %s.Name, %s.Correlation, %s.PValue," % (db.type,tempTable, tempTable) + # dataStartPos = 3 + # + # query += string.join(temp,', ') + # query += ' FROM (%s, %sXRef, %sFreeze)' % (db.type, db.type, db.type) + # if method == "3": + # query += ' LEFT JOIN %s ON %s.GeneId2=ProbeSet.GeneId ' % (tempTable,tempTable) + # if method == "4" or method == "5": + # query += ' LEFT JOIN %s ON %s.Symbol=ProbeSet.Symbol ' % (tempTable,tempTable) + # #XZ, 03/04/2009: Xiaodong changed Data to %sData and changed parameters from %(item,item, db.type,item,item) to %(db.type, item,item, db.type,item,item) + # for item in StrainIdstep: + # query += 'left join %sData as T%s on T%s.Id = %sXRef.DataId and T%s.StrainId=%s\n' %(db.type, item,item, db.type,item,item) + # + # if method == "3": + # query += "WHERE ProbeSet.GeneId IS NOT NULL AND %s.value IS NOT NULL AND %sXRef.%sFreezeId = %sFreeze.Id and %sFreeze.Name = '%s' and %s.Id = %sXRef.%sId order by %s.Id" % (tempTable,db.type, db.type, db.type, db.type, db.name, db.type, db.type, db.type, db.type) + # if method == "4" or method == "5": + # query += "WHERE ProbeSet.Symbol IS NOT NULL AND %s.Correlation IS NOT NULL AND %sXRef.%sFreezeId = %sFreeze.Id and %sFreeze.Name = '%s' and %s.Id = %sXRef.%sId order by %s.Id" % (tempTable,db.type, db.type, db.type, db.type, db.name, db.type, db.type, db.type, db.type) else: query = "SELECT %s.Name," % db.type dataStartPos = 1 @@ -1181,9 +1229,10 @@ Resorting this table <br> return traitList - def get_trait(self, cached, vals): + def get_traits(self, vals): - if cached: + #Todo: Redo cached stuff using memcached + if False: _log.info("Using the fast method because the file exists") lit_corrs = {} tissue_corrs = {} @@ -1235,14 +1284,17 @@ Resorting this table <br> return traits, new_vals else: - _log.info("Using the slow method for correlation") - - _log.info("Fetching from database") - traits = self.fetchAllDatabaseData(species=self.species, GeneId=self.gene_id, GeneSymbol=self.trait_symbol, strains=self.sample_names, db=self.db, method=self.method, returnNumber=self.returnNumber, tissueProbeSetFreezeId= self.tissue_probeset_freeze_id) - _log.info("Done fetching from database") + traits = self.fetchAllDatabaseData(species=self.dataset.species, + GeneId=self.gene_id, + GeneSymbol=self.trait.symbol, + strains=self.sample_names, + db=self.db, + method=self.method, + returnNumber=self.returnNumber, + tissueProbeSetFreezeId= self.tissue_probeset_freeze_id) totalTraits = len(traits) #XZ, 09/18/2008: total trait number - return traits, vals + return traits def do_parallel_correlation(self): @@ -1302,26 +1354,26 @@ Resorting this table <br> _log.info("Done correlating using the fast method") - def correlate(self, vals): + def correlate(self): correlations = [] #XZ: Use the fast method only for probeset dataset, and this dataset must have been created. #XZ: Otherwise, use original method - _log.info("Entering correlation") + #_log.info("Entering correlation") - db_filename = self.getFileName( target_db_name=self.target_db_name ) - - cache_available = db_filename in os.listdir(webqtlConfig.TEXTDIR) + #db_filename = self.getFileName(target_db_name=self.target_db_name) + # + #cache_available = db_filename in os.listdir(webqtlConfig.TEXTDIR) # If the cache file exists, do a cached correlation for probeset data - if self.db.type == "ProbeSet": + if self.dataset.type == "ProbeSet": # if self.method in [METHOD_SAMPLE_PEARSON, METHOD_SAMPLE_RANK] and cache_available: # traits = do_parallel_correlation() # # else: - (traits, vals) = self.get_trait(cache_available, vals) + traits = self.get_traits(self.vals) for trait in traits: trait.calculate_correlation(vals, self.method) @@ -1401,7 +1453,6 @@ Resorting this table <br> return trait_list - def calculateCorrOfAllTissueTrait(self, primaryTraitSymbol=None, TissueProbeSetFreezeId=None, method=None): symbolCorrDict = {} @@ -2080,3 +2131,32 @@ Resorting this table <br> newrow += 1 return tblobj_body, worksheet, corrScript + + +def calCorrelation(values_1, values_2): + N = Math.min(len(values_1), len(values_2)) + X = [] + Y = [] + for i in range(N): + if values_1[i]!= None and values_2[i]!= None: + X.append(values_1[i]) + Y.append(values_2[i]) + NN = len(X) + if NN <6: + return (0.0,NN) + sx = reduce(lambda x,y:x+y,X,0.0) + sy = reduce(lambda x,y:x+y,Y,0.0) + x_mean = sx/NN + y_mean = sy/NN + xyd = 0.0 + sxd = 0.0 + syd = 0.0 + for i in range(NN): + xyd += (X[i] - x_mean)*(Y[i] - y_mean) + sxd += (X[i] - x_mean)*(X[i] - x_mean) + syd += (Y[i] - y_mean)*(Y[i] - y_mean) + try: + corr = xyd/(sqrt(sxd)*sqrt(syd)) + except: + corr = 0 + return (corr, NN) diff --git a/wqflask/wqflask/dataSharing/SharingInfo.py b/wqflask/wqflask/dataSharing/SharingInfo.py index befc158a..41a75222 100755 --- a/wqflask/wqflask/dataSharing/SharingInfo.py +++ b/wqflask/wqflask/dataSharing/SharingInfo.py @@ -34,12 +34,12 @@ import requests from dbFunction import webqtlDatabaseFunction import SharingBody -import logging -logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO) - -_log = logging.getLogger("search") -_ch = logging.StreamHandler() -_log.addHandler(_ch) +#import logging +#logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO) +# +#_log = logging.getLogger("search") +#_ch = logging.StreamHandler() +#_log.addHandler(_ch) diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py index a2eddfc6..7b3e0869 100644 --- a/wqflask/wqflask/do_search.py +++ b/wqflask/wqflask/do_search.py @@ -20,22 +20,23 @@ class DoSearch(object): # Used to translate search phrases into classes search_types = dict() - def __init__(self, search_term, search_operator, dataset): + def __init__(self, search_term, search_operator=None, dataset=None): self.search_term = search_term # Make sure search_operator is something we expect assert search_operator in (None, "=", "<", ">", "<=", ">="), "Bad search operator" self.search_operator = search_operator self.dataset = dataset - print("self.dataset is boo: ", type(self.dataset), pf(self.dataset)) - print("self.dataset.group is: ", pf(self.dataset.group)) - - #Get group information for dataset and the species id - self.species_id = webqtlDatabaseFunction.retrieve_species_id(self.dataset.group.name) + + if self.dataset: + print("self.dataset is boo: ", type(self.dataset), pf(self.dataset)) + print("self.dataset.group is: ", pf(self.dataset.group)) + #Get group information for dataset and the species id + self.species_id = webqtlDatabaseFunction.retrieve_species_id(self.dataset.group.name) def execute(self, query): """Executes query and returns results""" query = self.normalize_spaces(query) - print("in do_search query is:", pf(query)) + #print("in do_search query is:", pf(query)) results = g.db.execute(query, no_parameters=True).fetchall() #results = self.cursor.fetchall() return results @@ -57,8 +58,42 @@ class DoSearch(object): @classmethod def get_search(cls, search_type): + print("search_types are:", pf(cls.search_types)) return cls.search_types[search_type] +class QuickMrnaAssaySearch(DoSearch): + """A general search for mRNA assays""" + + DoSearch.search_types['quick_mrna_assay'] = "QuickMrnaAssaySearch" + + base_query = """SELECT ProbeSet.Name as ProbeSet_Name, + ProbeSet.Symbol as ProbeSet_Symbol, + ProbeSet.description as ProbeSet_Description, + ProbeSet.Chr_num as ProbeSet_Chr_Num, + ProbeSet.Mb as ProbeSet_Mb, + ProbeSet.name_num as ProbeSet_name_num + FROM ProbeSet """ + + header_fields = ['', + 'Record ID', + 'Symbol', + 'Location'] + + def run(self): + """Generates and runs a search for assays across all mRNA expression datasets""" + + print("Running ProbeSetSearch") + query = self.base_query + """WHERE (MATCH (ProbeSet.Name, + ProbeSet.description, + ProbeSet.symbol, + ProbeSet.alias) + AGAINST ('%s' IN BOOLEAN MODE)) + """ % (escape(self.search_term[0])) + + #print("final query is:", pf(query)) + + return self.execute(query) + class MrnaAssaySearch(DoSearch): """A search within an mRNA expression dataset""" @@ -99,7 +134,7 @@ class MrnaAssaySearch(DoSearch): where_clause, escape(self.dataset.id))) - print("query is:", pf(query)) + #print("query is:", pf(query)) return query @@ -120,11 +155,11 @@ class MrnaAssaySearch(DoSearch): """ % (escape(self.search_term[0]), escape(str(self.dataset.id))) - print("final query is:", pf(query)) + #print("final query is:", pf(query)) return self.execute(query) - + class PhenotypeSearch(DoSearch): """A search within a phenotype dataset""" @@ -198,9 +233,57 @@ class PhenotypeSearch(DoSearch): query = self.compile_final_query(where_clause = self.get_fields_clause()) - results = self.execute(query) - print("in [df] run results are:", results) - return results + return self.execute(query) + +class QuickPhenotypeSearch(PhenotypeSearch): + """A search across all phenotype datasets""" + + DoSearch.search_types['quick_phenotype'] = "QuickPhenotypeSearch" + + base_query = """SELECT Species.Name as Species_Name, + PublishFreeze.FullName as Dataset_Name, + PublishFreeze.Name, + PublishXRef.Id, + PublishFreeze.createtime as thistable, + Publication.PubMed_ID as Publication_PubMed_ID, + Phenotype.Post_publication_description as Phenotype_Name + FROM Phenotype, + PublishFreeze, + Publication, + PublishXRef, + InbredSet, + Species """ + + search_fields = ('Phenotype.Post_publication_description', + 'Phenotype.Pre_publication_description', + 'Phenotype.Pre_publication_abbreviation', + 'Phenotype.Post_publication_abbreviation', + 'Phenotype.Lab_code', + 'Publication.PubMed_ID', + 'Publication.Abstract', + 'Publication.Title', + 'Publication.Authors') + + def compile_final_query(self, where_clause = ''): + """Generates the final query string""" + + query = (self.base_query + + """WHERE %s + PublishXRef.PhenotypeId = Phenotype.Id and + PublishXRef.PublicationId = Publication.Id and + PublishXRef.InbredSetId = InbredSet.Id and + InbredSet.SpeciesId = Species.Id""" % where_clause) + + print("query is:", pf(query)) + + return query + + def run(self): + """Generates and runs a search across all phenotype datasets""" + + query = self.compile_final_query(where_clause = self.get_fields_clause()) + + return self.execute(query) class GenotypeSearch(DoSearch): """A search within a genotype dataset""" diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index 374e7c95..334ce631 100755 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -5,1659 +5,160 @@ from base import data_set #import create_dataset from pprint import pformat as pf -import time import string -import math -#from math import * -#import piddle import sys import os -import httplib -import urllib +import collections -from htmlgen import HTMLgen2 as HT -from utility import Plot, Bunch -from wqflask.interval_analyst import GeneUtil -from base.trait import GeneralTrait -from base.data_set import create_dataset -from base.templatePage import templatePage -from utility import webqtlUtil -from base import webqtlConfig -from dbFunction import webqtlDatabaseFunction -from base.GeneralObject import GeneralObject +import numpy as np +from scipy import linalg -import reaper -import cPickle -from utility.THCell import THCell -from utility.TDCell import TDCell +import simplejson as json +#from redis import Redis -class MarkerRegression(object): - #def __init__(self, start_vars): - # - # print("[mike] Now start_vars is:", pf(start_vars)) - # - # self.dataset = data_set.create_dataset(start_vars['dataset_name']) - # self.this_trait = GeneralTrait(dataset=self.dataset.name, - # name=start_vars['trait_id'], - # cellid=None) - # - # print("self.this_trait is: ", pf(self.this_trait)) - # print("self.dataset is: ", pf(self.dataset)) +from base.trait import GeneralTrait +from base import data_set +from base import species +from base import webqtlConfig +from wqflask.my_pylmm.data import prep_data +from wqflask.my_pylmm.pyLMM import lmm +from wqflask.my_pylmm.pyLMM import input +from utility import helper_functions +from utility import Plot, Bunch +from utility import temp_data - def __init__(self, start_vars): - #templatePage.__init__(self, fd) +from utility.benchmark import Bench - #if not self.openMysql(): - # return - #print("start_vars are: ", pf(start_vars)) +class MarkerRegression(object): + + def __init__(self, start_vars, temp_uuid): - self.dataset = create_dataset(start_vars['dataset_name']) - self.this_trait = GeneralTrait(dataset=self.dataset.name, - name=start_vars['trait_id'], - cellid=None) - self.num_perm = int(start_vars['num_perm']) + helper_functions.get_species_dataset_trait(self, start_vars) - # Passed in by the form (user might have edited) - #samples = start_vars['allsamples'].split() + tempdata = temp_data.TempData(temp_uuid) - self.samples = [] # Want only ones with values + self.samples = [] # Want only ones with values self.vals = [] - self.variances = [] - - self.dataset.group.read_genotype_file() - self.genotype = self.dataset.group.genotype - - assert start_vars['display_all_lrs'] in ('True', 'False') - self.display_all_lrs = True if start_vars['display_all_lrs'] == 'True' else False - + for sample in self.dataset.group.samplelist: value = start_vars['value:' + sample] - variance = start_vars['variance:' + sample] - if variance.strip().lower() == 'x': - variance = 0 - else: - variance = float(variance) - if value.strip().lower() != 'x': - self.samples.append(str(sample)) - self.vals.append(float(value)) - self.variances.append(variance) - - #self.initializeParameters(start_vars) - - #filename= webqtlUtil.genRandStr("Itvl_") - #ChrList,ChrNameOrderIdDict,ChrOrderIdNameDict,ChrtLengthMbList= self.getChrNameOrderIdLength(RISet=fd.RISet) - - if False: # For PLINK - - traitInfoList = string.split(string.strip(fd.identification),':') - probesetName = string.strip(traitInfoList[-1]) - plinkOutputFileName= webqtlUtil.genRandStr("%s_%s_"%(fd.RISet,probesetName)) - - # get related values from fd.allTraitData; the format of 'allTraitValueDict'is {strainName1: value=-0.2...} - fd.readData() - allTraitValueDict = fd.allTraitData - - #automatically generate pheno txt file for PLINK - self.genPhenoTxtFileForPlink(phenoFileName=plinkOutputFileName,RISetName=fd.RISet,probesetName=probesetName, valueDict=allTraitValueDict) - # os.system full path is required for input and output files; specify missing value is -9999 - plink_command = '%splink/plink --noweb --ped %splink/%s.ped --no-fid --no-parents --no-sex --no-pheno --map %splink/%s.map --pheno %s/%s.txt --pheno-name %s --missing-phenotype -9999 --out %s%s --assoc ' % (webqtlConfig.HTMLPATH, webqtlConfig.HTMLPATH, fd.RISet, webqtlConfig.HTMLPATH, fd.RISet, webqtlConfig.TMPDIR, plinkOutputFileName, probesetName, webqtlConfig.TMPDIR, plinkOutputFileName) - - os.system(plink_command) - - if fd.identification: - heading2 = HT.Paragraph('Trait ID: %s' % fd.identification) - heading2.__setattr__("class","subtitle") - self.dict['title'] = '%s: Genome Association' % fd.identification - else: - heading2 = "" - self.dict['title'] = 'Genome Association' - - if fd.traitInfo: - symbol,chromosome,MB = string.split(fd.traitInfo,'\t') - heading3 = HT.Paragraph('[ ',HT.Strong(HT.Italic('%s' % symbol,id="green")),' on Chr %s @ %s Mb ]' % (chromosome,MB)) - else: - heading3 = "" - - heading = HT.Paragraph('Trait Data Entered for %s Set' % fd.RISet) - heading.__setattr__("class","title") - - # header info part:Trait Data Entered for HLC Set & Trait ID: - headerdiv = HT.TR(HT.TD(heading, heading2,heading3, width='45%',valign='top', align='left', bgColor='#eeeeee')) - - self.ChrList=ChrList # get chr name from '1' to 'X' - self.ChrLengthMbList = ChrLengthMbList - - # build plink result dict based on chr, key is chr name, value is in list type including Snpname, bp and pvalue info - plinkResultDict={} - count,minPvalue,plinkResultDict =self.getPlinkResultDict(outputFileName=plinkOutputFileName,thresholdPvalue=self.pValue,ChrOrderIdNameDict=ChrOrderIdNameDict) - - # if can not find results which are matched with assigned p-value, system info will show up - if count >0: - - #for genome association report table - reportTable="" - # sortable table object - resultstable,tblobj,bottomInfo = self.GenReportForPLINK(ChrNameOrderIdDict=ChrNameOrderIdDict, RISet=fd.RISet,plinkResultDict=plinkResultDict,thresholdPvalue=self.pValue,chrList=self.ChrList) - - # creat object for result table for sort function - objfile = open('%s.obj' % (webqtlConfig.TMPDIR+filename), 'wb') - cPickle.dump(tblobj, objfile) - objfile.close() - - sortby = ("Index", "up") - reportTable =HT.Div(webqtlUtil.genTableObj(tblobj=tblobj, file=filename, sortby=sortby, tableID = "sortable", addIndex = "0"), Id="sortable") - - descriptionTable = HT.TableLite(border=0, cellpadding=0, cellspacing=0) - descriptionTable.append(HT.TR(HT.TD(reportTable, colspan=3))) - descriptionTable.append(HT.TR(HT.TD(HT.BR(),HT.BR()))) - descriptionTable.append(bottomInfo) - - # get each chr's length - self.ChrLengthMbList = map(lambda x: x/1000000.0, self.ChrLengthMbList) # change unit from bp to mb - self.ChrLengthMbSum = reduce(lambda x, y:x+y, self.ChrLengthMbList, 0.0)# get total length of all chrs - if self.ChrLengthMbList: - self.GraphInterval = self.ChrLengthMbSum/(len(self.ChrLengthMbList)*12) #Empirical Mb interval - else: - self.GraphInterval = 1 - - # for human data, there's no CM value - self.ChrLengthCMList = [] - self.ChrLengthCMSum = 0 - - # begin: common part with human data - intCanvas = pid.PILCanvas(size=(self.graphWidth,self.graphHeight)) - gifmap = self.plotIntMappingForPLINK(fd, intCanvas, startMb = self.startMb, endMb = self.endMb, plinkResultDict=plinkResultDict) - - intCanvas.save(os.path.join(webqtlConfig.IMGDIR, filename), format='png') - intImg=HT.Image('/image/'+filename+'.png', border=0, usemap='#WebQTLImageMap') - - TD_LR = HT.TR(HT.TD(HT.Blockquote(gifmap,intImg, HT.P()), bgColor='#eeeeee', height = 200)) - self.dict['body'] = str(headerdiv)+str(TD_LR)+str(resultstable)+str(HT.TR(HT.TD(descriptionTable))) - - else: - heading = "Genome Association" - detail = ['There is no association with marker that meets this criteria. Please provide a less stringend threshold. The minimun p-value is %s.'%minPvalue] - self.error(heading=heading,detail=detail) - return - - else: # QTLreaper result - #if not fd.genotype: - # fd.readData() - # - #fd.parentsf14regression = fd.formdata.getvalue('parentsf14regression') - #weightedRegression = fd.formdata.getvalue('applyVarianceSE') - - #if fd.parentsf14regression and fd.genotype_2: - # _genotype = fd.genotype_2 - #else: - #print("[black]:", self.genotype) - - #_strains, _vals, _vars, N = fd.informativeStrains(_genotype.prgy, weightedRegression) + self.samples.append(str(sample)) + self.vals.append(value) + + self.gen_data(tempdata) + + #Get chromosome lengths for drawing the manhattan plot + chromosome_mb_lengths = {} + for key in self.species.chromosomes.chromosomes.keys(): + chromosome_mb_lengths[key] = self.species.chromosomes.chromosomes[key].mb_length + + self.js_data = dict( + chromosomes = chromosome_mb_lengths, + qtl_results = self.qtl_results, + ) - #if fd.identification: - # heading2 = HT.Paragraph('Trait ID: %s' % fd.identification) - # heading2.__setattr__("class","subtitle") - # self.dict['title'] = '%s: Genome Association' % fd.identification - #else: - # heading2 = "" - # self.dict['title'] = 'Genome Association' - #if fd.traitInfo: - # symbol, chromosome, MB = string.split(fd.traitInfo,'\t') - # heading3 = HT.Paragraph('[ ',HT.Strong(HT.Italic('%s' % symbol,id="green")),' on Chr %s @ %s Mb ]' % (chromosome,MB)) - #else: - # heading3 = "" + def gen_data(self, tempdata): + """Generates p-values for each marker""" - ### Todo in 2013: Don't allow marker regression in show trait page when number of samples - ### with values < 5 + self.dataset.group.get_markers() - #if N < webqtlConfig.KMININFORMATIVE: - # heading = "Genome Association" - # detail = ['Fewer than %d strain data were entered for %s data set. No mapping attempted.' % (webqtlConfig.KMININFORMATIVE, fd.RISet)] - # self.error(heading=heading,detail=detail) - # return - #else: - # heading = HT.Paragraph('Trait Data Entered for %s Set' % fd.RISet) - # heading.__setattr__("class","title") + pheno_vector = np.array([val == "x" and np.nan or float(val) for val in self.vals]) - #datadiv = HT.TD(heading, heading2,heading3, width='45%',valign='top', align='left', bgColor='#eeeeee') - #resultstable,tblobj,bottomInfo = self.GenReport(ChrNameOrderIdDict,fd, _genotype, _strains, _vals, _vars) + if self.dataset.group.species == "human": + p_values, t_stats = self.gen_human_results(pheno_vector, tempdata) + else: + genotype_data = [marker['genotypes'] for marker in self.dataset.group.markers.markers] - self.gen_data() - #resultstable = self.GenReport(fd, _genotype, _strains, _vals, _vars) - - # creat object for result table for sort function - ##objfile = open('%s.obj' % (webqtlConfig.TMPDIR+filename), 'wb') - ##cPickle.dump(tblobj, objfile) - ##objfile.close() - # - #sortby = ("Index", "up") - #reportTable =HT.Div(webqtlUtil.genTableObj(tblobj=tblobj, file=filename, sortby=sortby, tableID = "sortable", addIndex = "0"), Id="sortable") - # - #descriptionTable = HT.TableLite(border=0, cellpadding=0, cellspacing=0) - #descriptionTable.append(HT.TR(HT.TD(reportTable, colspan=3))) - #descriptionTable.append(HT.TR(HT.TD(HT.BR(),HT.BR()))) - #descriptionTable.append(bottomInfo) - - #self.traitList=_vals - - ##########################plot####################### - - ################################################################ - # Generate Chr list and Retrieve Length Information - ################################################################ - #self.genotype= _genotype - #self.ChrList = [("All", -1)] - - #for i, indChr in enumerate(self.genotype): - # self.ChrList.append((indChr.name, i)) - - #self.cursor.execute(""" - # Select - # Length from Chr_Length, InbredSet - # where - # Chr_Length.SpeciesId = InbredSet.SpeciesId AND - # InbredSet.Name = '%s' AND - # Chr_Length.Name in (%s) - # Order by - # OrderId - # """ % (fd.RISet, string.join(map(lambda X: "'%s'" % X[0], self.ChrList[1:]), ", "))) - # - #self.ChrLengthMbList = self.cursor.fetchall() - #self.ChrLengthMbList = map(lambda x: x[0]/1000000.0, self.ChrLengthMbList) - #self.ChrLengthMbSum = reduce(lambda x, y:x+y, self.ChrLengthMbList, 0.0) - #if self.ChrLengthMbList: - # self.MbGraphInterval = self.ChrLengthMbSum/(len(self.ChrLengthMbList)*12) #Empirical Mb interval - #else: - # self.MbGraphInterval = 1 - # - #self.ChrLengthCMList = [] - #for i, _chr in enumerate(self.genotype): - # self.ChrLengthCMList.append(_chr[-1].cM - _chr[0].cM) - #self.ChrLengthCMSum = reduce(lambda x, y:x+y, self.ChrLengthCMList, 0.0)# used for calculate plot scale - - #self.GraphInterval = self.MbGraphInterval #Mb - - # begin: common part with human data - #intCanvas = pid.PILCanvas(size=(self.graphWidth,self.graphHeight)) - #gifmap = self.plotIntMapping(fd, intCanvas, startMb = self.startMb, endMb = self.endMb, showLocusForm= "") - #filename= webqtlUtil.genRandStr("Itvl_") - #intCanvas.save(os.path.join(webqtlConfig.IMGDIR, filename), format='png') - #intImg=HT.Image('/image/'+filename+'.png', border=0, usemap='#WebQTLImageMap') - - ################################################################ - # footnote goes here - ################################################################ - #btminfo = HT.Paragraph(Id="smallsize") #Small('More information about this graph is available here.') - - #if (self.additiveChecked): - # btminfo.append(HT.BR(), 'A positive additive coefficient (', HT.Font('green', color='green'), ' line) indicates that %s alleles increase trait values. In contrast, a negative additive coefficient (' % fd.ppolar, HT.Font('red', color='red'), ' line) indicates that %s alleles increase trait values.' % fd.mpolar) - - - #TD_LR = HT.TR(HT.TD(HT.Blockquote(gifmap,intImg, HT.P()), bgColor='#eeeeee', height = 200)) - # - #self.dict['body'] = str(datadiv)+str(TD_LR)+str(resultstable)+str(HT.TR(HT.TD(descriptionTable))) - - # end: common part with human data + no_val_samples = self.identify_empty_samples() + trimmed_genotype_data = self.trim_genotypes(genotype_data, no_val_samples) + + genotype_matrix = np.array(trimmed_genotype_data).T - self.js_data = dict( - qtl_results = self.pure_qtl_results, - lrs_array = self.lrs_array, + print("pheno_vector: ", pf(pheno_vector)) + print("genotype_matrix: ", pf(genotype_matrix)) + print("genotype_matrix.shape: ", pf(genotype_matrix.shape)) + + t_stats, p_values = lmm.run( + pheno_vector, + genotype_matrix, + restricted_max_likelihood=True, + refit=False, + temp_data=tempdata ) - - - # add by NL 10-2-2011 - def initializeParameters(self, fd): - """ - Initializes all of the MarkerRegressionPage class parameters, - acquiring most values from the formdata (fd) - """ - ################################### - # manhattam plot parameters - ################################### - - self.graphHeight = 600 - self.graphWidth = 1280 - self.plotScale = 'physic' - self.selectedChr = -1 - self.GRAPH_BACK_DARK_COLOR = pid.HexColor(0xF1F1F9) - self.GRAPH_BACK_LIGHT_COLOR = pid.HexColor(0xFBFBFF) - self.LRS_COLOR = pid.HexColor(0x0000FF) - self.LRS_LOD ='LRS' - self.lrsMax = float(fd.formdata.getvalue('lrsMax', 0)) - self.startMb = fd.formdata.getvalue('startMb', "-1") - self.endMb = fd.formdata.getvalue('endMb', "-1") - self.mappingMethodId = fd.formdata.getvalue('mappingMethodId', "0") - self.permChecked=True - self.multipleInterval=False - self.SIGNIFICANT_WIDTH = 5 - self.SUGGESTIVE_WIDTH = 5 - self.SIGNIFICANT_COLOR = pid.HexColor(0xEBC7C7) - self.SUGGESTIVE_COLOR = pid.gainsboro - self.colorCollection = [self.LRS_COLOR] - self.additiveChecked= True - self.ADDITIVE_COLOR_POSITIVE = pid.green - self.legendChecked =False - self.pValue=float(fd.formdata.getvalue('pValue',-1)) - - # allow user to input p-value greater than 1, - # in this case, the value will be treated as -lgP value. so the input value needs to be transferred to power of 10 format - if self.pValue >1: - self.pValue =10**-(self.pValue) - - try: - self.startMb = float(self.startMb) - self.endMb = float(self.endMb) - if self.startMb > self.endMb: - temp = self.startMb - self.startMb = self.endMb - self.endMb = temp - #minimal distance 10bp - if self.endMb - self.startMb < 0.00001: - self.endMb = self.startMb + 0.00001 - except: - self.startMb = self.endMb = -1 - - def GenReportForPLINK(self, ChrNameOrderIdDict={},RISet='',plinkResultDict= {},thresholdPvalue=-1,chrList=[]): - - 'Create an HTML division which reports any loci which are significantly associated with the submitted trait data.' - ######################################### - # Genome Association report - ######################################### - locusFormName = webqtlUtil.genRandStr("fm_") - locusForm = HT.Form(cgi = os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), \ - enctype='multipart/form-data', name=locusFormName, submit=HT.Input(type='hidden')) - hddn = {'FormID':'showDatabase','ProbeSetID':'_','database':RISet+"Geno",'CellID':'_', \ - 'RISet':RISet, 'incparentsf1':'on'} - for key in hddn.keys(): - locusForm.append(HT.Input(name=key, value=hddn[key], type='hidden')) - - regressionHeading = HT.Paragraph('Genome Association Report') - regressionHeading.__setattr__("class","title") - - filename= webqtlUtil.genRandStr("GenomeAsscociation_") - fpText = open('%s.txt' % (webqtlConfig.TMPDIR+filename), 'wb') - fpText.write('The loci meet the criteria of P-Value <= %3.6f.\n'%thresholdPvalue) - pValueInfo =HT.Paragraph('The loci meet the criteria of P-Value <= %3.6f.\n'%thresholdPvalue) - - textUrl = HT.Href(text = 'Download', url= '/tmp/'+filename+'.txt', target = "_blank", Class='fs12 fwn') - bottomInfo = HT.TR(HT.TD(HT.Paragraph(textUrl, ' result in tab-delimited text format.', HT.BR(), HT.BR(),Class="fs12 fwn"), colspan=3)) - - tblobj={} # build dict for genTableObj function; keys include header and body - tblobj_header = [] # value of key 'header' - tblobj_body=[] # value of key 'body' - reportHeaderRow=[] # header row list for tblobj_header (html part) - headerList=['Index','SNP Name','Chr','Mb','-log(P)'] - headerStyle="fs14 fwb ffl b1 cw cbrb" # style of the header - cellColorStyle = "fs13 b1 fwn c222" # style of the cells + self.dataset.group.markers.add_pvalues(p_values) - if headerList: - for ncol, item in enumerate(headerList): - reportHeaderRow.append(THCell(HT.TD(item, Class=headerStyle, valign='bottom',nowrap='ON'),text=item, idx=ncol)) - #download file for table headers' names - fpText.write('SNP_Name\tChromosome\tMb\t-log(P)\n') + self.qtl_results = self.dataset.group.markers.markers - tblobj_header.append(reportHeaderRow) - tblobj['header']=tblobj_header - index=1 - for chr in chrList: + def gen_human_results(self, pheno_vector, tempdata): + file_base = os.path.join(webqtlConfig.PYLMM_PATH, self.dataset.group.name) - if plinkResultDict.has_key(chr): - if chr in ChrNameOrderIdDict.keys(): - chrOrderId =ChrNameOrderIdDict[chr] - else: - chrOrderId=chr + plink_input = input.plink(file_base, type='b') + input_file_name = os.path.join(webqtlConfig.SNP_PATH, self.dataset.group.name + ".snps.gz") - valueList=plinkResultDict[chr] + pheno_vector = pheno_vector.reshape((len(pheno_vector), 1)) + covariate_matrix = np.ones((pheno_vector.shape[0],1)) + kinship_matrix = np.fromfile(open(file_base + '.kin','r'),sep=" ") + kinship_matrix.resize((len(plink_input.indivs),len(plink_input.indivs))) - for value in valueList: - reportBodyRow=[] # row list for tblobj_body (html part) - snpName=value[0] - bp=value[1] - mb=int(bp)/1000000.0 - - try: - pValue =float(value[2]) - except: - pValue =1 - formattedPvalue = -math.log10(pValue) - - formattedPvalue = webqtlUtil.SciFloat(formattedPvalue) - dbSnprs=snpName.replace('rs','') - SnpHref = HT.Href(text=snpName, url="http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=%s"%dbSnprs, target="_blank") - - selectCheck=HT.Input(type="checkbox", Class="checkbox", name="index",value=index, onClick="highlight(this)") - reportBodyRow.append(TDCell(HT.TD(str(index),selectCheck, align='right',Class=cellColorStyle,nowrap='ON'),str(index),index)) - reportBodyRow.append(TDCell(HT.TD(SnpHref, Class=cellColorStyle,nowrap='ON'),snpName, snpName)) - reportBodyRow.append(TDCell(HT.TD(chr, Class=cellColorStyle, align="center",nowrap='ON'),chr, chrOrderId)) - reportBodyRow.append(TDCell(HT.TD('%3.6f'%mb, Class=cellColorStyle, align="center",nowrap='ON'),mb, mb)) - reportBodyRow.append(TDCell(HT.TD(formattedPvalue, Class=cellColorStyle, align="center",nowrap='ON'),formattedPvalue, float(formattedPvalue))) - - fpText.write('%s\t%s\t%3.6f\t%s\n' % (snpName, str(chr), mb, formattedPvalue)) - index+=1 - - tblobj_body.append(reportBodyRow) - - tblobj['body']=tblobj_body - rv=HT.TR(HT.TD(regressionHeading,pValueInfo, locusForm, HT.P(), width='55%',valign='top', align='left',bgColor='#eeeeee')) - - return rv, tblobj,bottomInfo - - - def gen_data(self): - """Todo: Fill this in here""" - - #calculate QTL for each trait - self.qtl_results = self.genotype.regression(strains = self.samples, - trait = self.vals) - self.lrs_array = self.genotype.permutation(strains = self.samples, - trait = self.vals, - nperm=self.num_perm) - - self.lrs_thresholds = Bunch( - suggestive = self.lrs_array[int(self.num_perm*0.37-1)], - significant = self.lrs_array[int(self.num_perm*0.95-1)], - highly_significant = self.lrs_array[int(self.num_perm*0.99-1)] - ) - - if self.display_all_lrs: - filtered_results = self.qtl_results - else: - suggestive_results = [] - self.pure_qtl_results = [] - for result in self.qtl_results: - self.pure_qtl_results.append(dict(locus=dict(name=result.locus.name, - mb=result.locus.Mb, - chromosome=result.locus.chr), - lrs=result.lrs, - additive=result.additive)) - if result.lrs > self.lrs_thresholds.suggestive: - suggestive_results.append(result) - filtered_results = suggestive_results - - - # Todo (2013): Use top_10 variable to generate page message about whether top 10 was used - if not filtered_results: - # We use the 10 results with the highest LRS values - filtered_results = sorted(self.qtl_results)[-10:] - self.top_10 = True - else: - self.top_10 = False - - - - #qtlresults2 = [] - #if self.disp_all_lrs: - # filtered = self.qtl_results[:] - #else: - # filtered = filter(lambda x, y=fd.suggestive: x.lrs > y, qtlresults) - #if len(filtered) == 0: - # qtlresults2 = qtlresults[:] - # qtlresults2.sort() - # filtered = qtlresults2[-10:] + p_values, t_stats = lmm.run_human( + pheno_vector, + covariate_matrix, + input_file_name, + kinship_matrix, + loading_progress=tempdata + ) - ######################################### - # Permutation Graph - ######################################### - #myCanvas = pid.PILCanvas(size=(400,300)) - ##plotBar(myCanvas,10,10,390,290,LRSArray,XLabel='LRS',YLabel='Frequency',title=' Histogram of Permutation Test',identification=fd.identification) - #Plot.plotBar(myCanvas, LRSArray, XLabel='LRS',YLabel='Frequency',title=' Histogram of Permutation Test') - #filename= webqtlUtil.genRandStr("Reg_") - #myCanvas.save(webqtlConfig.IMGDIR+filename, format='gif') - #img=HT.Image('/image/'+filename+'.gif',border=0,alt='Histogram of Permutation Test') - - #if fd.suggestive == None: - # fd.suggestive = LRSArray[int(fd.nperm*0.37-1)] - #else: - # fd.suggestive = float(fd.suggestive) - #if fd.significance == None: - # fd.significance = LRSArray[int(fd.nperm*0.95-1)] - #else: - # fd.significance = float(fd.significance) + return p_values, t_stats - #permutationHeading = HT.Paragraph('Histogram of Permutation Test') - #permutationHeading.__setattr__("class","title") - # - #permutation = HT.TableLite() - #permutation.append(HT.TR(HT.TD(img))) - for marker in filtered_results: - if marker.lrs > webqtlConfig.MAXLRS: - marker.lrs = webqtlConfig.MAXLRS + def identify_empty_samples(self): + no_val_samples = [] + for sample_count, val in enumerate(self.vals): + if val == "x": + no_val_samples.append(sample_count) + return no_val_samples - self.filtered_results = filtered_results - - #if fd.genotype.type == 'intercross': - # ncol =len(headerList) - # reportHeaderRow.append(THCell(HT.TD('Dominance Effect', Class=headerStyle, valign='bottom',nowrap='ON'),text='Dominance Effect', idx=ncol)) - # - # #download file for table headers' names - # fpText.write('LRS\tChromosome\tMb\tLocus\tAdditive Effect\tDominance Effect\n') - # - # index=1 - # for ii in filtered: - # #add by NL 06-20-2011: set LRS to 460 when LRS is infinite, - # if ii.lrs==float('inf') or ii.lrs>webqtlConfig.MAXLRS: - # LRS=webqtlConfig.MAXLRS #maximum LRS value - # else: - # LRS=ii.lrs - # - # if LRS > fd.significance: - # lrs = HT.TD(HT.Font('%3.3f*' % LRS, color='#FF0000'),Class=cellColorStyle) - # else: - # lrs = HT.TD('%3.3f' % LRS,Class=cellColorStyle) - # - # if ii.locus.chr in ChrNameOrderIdDict.keys(): - # chrOrderId =ChrNameOrderIdDict[ii.locus.chr] - # else: - # chrOrderId=ii.locus.chr - # - # reportBodyRow=[] # row list for tblobj_body (html part) - # selectCheck=HT.Input(type="checkbox", Class="checkbox", name="index",value=index, onClick="highlight(this)") - # reportBodyRow.append(TDCell(HT.TD(str(index),selectCheck, align='right',Class=cellColorStyle,nowrap='ON'),str(index),index)) - # reportBodyRow.append(TDCell(lrs,LRS, LRS)) - # reportBodyRow.append(TDCell(HT.TD(ii.locus.chr, Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.chr, chrOrderId)) - # reportBodyRow.append(TDCell(HT.TD('%3.6f'%ii.locus.Mb, Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.Mb, ii.locus.Mb)) - # reportBodyRow.append(TDCell(HT.TD(HT.Href(text=ii.locus.name, url = "javascript:showTrait('%s','%s');" % (locusFormName, ii.locus.name), Class='normalsize'), Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.name, ii.locus.name)) - # reportBodyRow.append(TDCell(HT.TD('%3.3f' % ii.additive, Class=cellColorStyle, align="center",nowrap='ON'),ii.additive, ii.additive)) - # reportBodyRow.append(TDCell(HT.TD('%3.3f' % ii.dominance, Class=cellColorStyle, align="center",nowrap='ON'),ii.dominance, ii.dominance)) - # - # fpText.write('%2.3f\t%s\t%3.6f\t%s\t%2.3f\t%2.3f\n' % (LRS, ii.locus.chr, ii.locus.Mb, ii.locus.name, ii.additive, ii.dominance)) - # index+=1 - # tblobj_body.append(reportBodyRow) - #else: - # #download file for table headers' names - # fpText.write('LRS\tChromosome\tMb\tLocus\tAdditive Effect\n') - # - # index=1 - # for ii in filtered: - # #add by NL 06-20-2011: set LRS to 460 when LRS is infinite, - # if ii.lrs==float('inf') or ii.lrs>webqtlConfig.MAXLRS: - # LRS=webqtlConfig.MAXLRS #maximum LRS value - # else: - # LRS=ii.lrs - # - # if LRS > fd.significance: - # lrs = HT.TD(HT.Font('%3.3f*' % LRS, color='#FF0000'),Class=cellColorStyle) - # else: - # lrs = HT.TD('%3.3f' % LRS,Class=cellColorStyle) - # - # if ii.locus.chr in ChrNameOrderIdDict.keys(): - # chrOrderId =ChrNameOrderIdDict[ii.locus.chr] - # else: - # chrOrderId=ii.locus.chr - # - # reportBodyRow=[] # row list for tblobj_body (html part) - # selectCheck=HT.Input(type="checkbox", Class="checkbox", name="index",value=index, onClick="highlight(this)") - # reportBodyRow.append(TDCell(HT.TD(str(index),selectCheck, align='right',Class=cellColorStyle,nowrap='ON'),str(index),index)) - # reportBodyRow.append(TDCell(lrs,LRS, LRS)) - # reportBodyRow.append(TDCell(HT.TD(ii.locus.chr, Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.chr, chrOrderId)) - # reportBodyRow.append(TDCell(HT.TD('%3.6f'%ii.locus.Mb, Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.Mb, ii.locus.Mb)) - # reportBodyRow.append(TDCell(HT.TD(HT.Href(text=ii.locus.name, url = "javascript:showTrait('%s','%s');" % (locusFormName, ii.locus.name), Class='normalsize'), Class=cellColorStyle, align="center",nowrap='ON'),ii.locus.name, ii.locus.name)) - # reportBodyRow.append(TDCell(HT.TD('%3.3f' % ii.additive, Class=cellColorStyle, align="center",nowrap='ON'),ii.additive, ii.additive)) - # - # fpText.write('%2.3f\t%s\t%3.6f\t%s\t%2.3f\n' % (LRS, ii.locus.chr, ii.locus.Mb, ii.locus.name, ii.additive)) - # index+=1 - # tblobj_body.append(reportBodyRow) - - #tblobj_header.append(reportHeaderRow) - #tblobj['header']=tblobj_header - #tblobj['body']=tblobj_body - - #rv=HT.TD(regressionHeading,LRSInfo,report, locusForm, HT.P(),width='55%',valign='top', align='left', bgColor='#eeeeee') - #if fd.genotype.type == 'intercross': - # bottomInfo.append(HT.BR(), HT.BR(), HT.Strong('Dominance Effect'),' is the difference between the mean trait value of cases heterozygous at a marker and the average mean for the two groups homozygous at this marker: e.g., BD - (BB+DD)/2]. A positive dominance effect indicates that the average phenotype of BD heterozygotes exceeds the mean of BB and DD homozygotes. No dominance deviation can be computed for a set of recombinant inbred strains or for a backcross.') - #return rv,tblobj,bottomInfo - - #return rv,tblobj,bottomInfo - - def plotIntMappingForPLINK(self, fd, canvas, offset= (80, 120, 20, 80), zoom = 1, startMb = None, endMb = None, showLocusForm = "",plinkResultDict={}): - #calculating margins - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - xLeftOffset = int(xLeftOffset*fontZoom) - xRightOffset = int(xRightOffset*fontZoom) - yBottomOffset = int(yBottomOffset*fontZoom) - - cWidth = canvas.size[0] - cHeight = canvas.size[1] - plotWidth = cWidth - xLeftOffset - xRightOffset - plotHeight = cHeight - yTopOffset - yBottomOffset - startPixelX = xLeftOffset - endPixelX = (xLeftOffset + plotWidth) - - #Drawing Area Height - drawAreaHeight = plotHeight - if self.plotScale == 'physic' and self.selectedChr > -1: # for single chr - drawAreaHeight -= self.ENSEMBL_BAND_HEIGHT + self.UCSC_BAND_HEIGHT+ self.WEBQTL_BAND_HEIGHT + 3*self.BAND_SPACING+ 10*zoom - if self.geneChecked: - drawAreaHeight -= self.NUM_GENE_ROWS*self.EACH_GENE_HEIGHT + 3*self.BAND_SPACING + 10*zoom - else: - if self.selectedChr > -1: - drawAreaHeight -= 20 - else:# for all chrs - drawAreaHeight -= 30 - - #Image map - gifmap = HT.Map(name='WebQTLImageMap') - - newoffset = (xLeftOffset, xRightOffset, yTopOffset, yBottomOffset) - # Draw the alternating-color background first and get plotXScale - plotXScale = self.drawGraphBackgroundForPLINK(canvas, gifmap, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb,plinkResultDict=plinkResultDict) - - # Draw X axis - self.drawXAxisForPLINK(fd, canvas, drawAreaHeight, gifmap, plotXScale, showLocusForm, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb) - # Draw manhattam plot - self.drawManhattanPlotForPLINK(canvas, drawAreaHeight, gifmap, plotXScale, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb,plinkResultDict=plinkResultDict,thresholdPvalue=self.pValue) - - return gifmap - - - def plotIntMapping(self, fd, canvas, offset= (80, 120, 20, 80), zoom = 1, startMb = None, endMb = None, showLocusForm = ""): - #calculating margins - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - xLeftOffset = int(xLeftOffset*fontZoom) - xRightOffset = int(xRightOffset*fontZoom) - yBottomOffset = int(yBottomOffset*fontZoom) - - cWidth = canvas.size[0] - cHeight = canvas.size[1] - plotWidth = cWidth - xLeftOffset - xRightOffset - plotHeight = cHeight - yTopOffset - yBottomOffset - startPixelX = xLeftOffset - endPixelX = (xLeftOffset + plotWidth) - - #Drawing Area Height - drawAreaHeight = plotHeight - if self.plotScale == 'physic' and self.selectedChr > -1: # for single chr - drawAreaHeight -= self.ENSEMBL_BAND_HEIGHT + self.UCSC_BAND_HEIGHT+ self.WEBQTL_BAND_HEIGHT + 3*self.BAND_SPACING+ 10*zoom - if self.geneChecked: - drawAreaHeight -= self.NUM_GENE_ROWS*self.EACH_GENE_HEIGHT + 3*self.BAND_SPACING + 10*zoom - else:# for all chrs - if self.selectedChr > -1: - drawAreaHeight -= 20 - else: - drawAreaHeight -= 30 - - #Image map - gifmap = HT.Map(name='WebQTLImageMap') - - newoffset = (xLeftOffset, xRightOffset, yTopOffset, yBottomOffset) - # Draw the alternating-color background first and get plotXScale - plotXScale = self.drawGraphBackground(canvas, gifmap, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb) - - # Draw X axis - self.drawXAxis(fd, canvas, drawAreaHeight, gifmap, plotXScale, showLocusForm, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb) - # Draw QTL curve - self.drawQTL(canvas, drawAreaHeight, gifmap, plotXScale, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb) - - #draw legend - if self.multipleInterval: - self.drawMultiTraitName(fd, canvas, gifmap, showLocusForm, offset=newoffset) - elif self.legendChecked: - self.drawLegendPanel(fd, canvas, offset=newoffset) - else: - pass - - #draw position, no need to use a separate function - if fd.genotype.Mbmap: - self.drawProbeSetPosition(canvas, plotXScale, offset=newoffset) - - return gifmap - - - # functions for manhattam plot of markers - def drawManhattanPlotForPLINK(self, canvas, drawAreaHeight, gifmap, plotXScale, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None,plinkResultDict={},thresholdPvalue=-1): - - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - # INTERCROSS = (self.genotype.type=="intercross") - INTERCROSS ='' #?????? - - ChrLengthDistList = self.ChrLengthMbList - drawRegionDistance = self.ChrLengthMbSum - GraphInterval=self.GraphInterval - pvalueHeightThresh = drawAreaHeight - 80 #ZS: Otherwise the plot gets very close to the chromosome labels - - #draw the pvalue scale - #We first determine whether or not we are using a sliding scale. - #If so, we need to compute the maximum pvalue value to determine where the max y-value should be, and call this pvalueMax. - #pvalueTop is then defined to be above the pvalueMax by enough to add one additional pvalueScale increment. - #if we are using a set-scale, then we set pvalueTop to be the user's value, and pvalueMax doesn't matter. - - # for human data we use p value instead of lrs - pValueList=[] - for key in plinkResultDict: - valueList = plinkResultDict[key] - for item in valueList: - pValue = item[-1] - pValueList.append(pValue) - - formattedPValueList=[] - for pValue in pValueList: - try: - pValue=float(pValue) - except: - pValue =1 - formattedpValue = -math.log10(pValue) - formattedPValueList.append(formattedpValue) - - #sliding scale - pvalueMax = max(formattedPValueList) - #pvalueMax =pvalueMax +1 - # no permutation result for plink func: GenReport() - pvalueMin = int(-math.log10(thresholdPvalue)) - - if pvalueMax> 100: - pvalueScale = 20.0 - elif pvalueMax > 20: - pvalueScale = 5.0 - elif pvalueMax > 7.5: - pvalueScale = 2.5 - else: - pvalueScale = 1.0 - - # the base line for x-axis is -log(thresholdPvalue) - pvalueAxisList = Plot.frange(pvalueMin, pvalueMax, pvalueScale) - #make sure the user's value appears on the y-axis - #ZS: There is no way to do this without making the position of the points not directly proportional to a given distance on the y-axis - #tempPvalueMax=round(pvalueMax) - tempPvalueMax = pvalueAxisList[len(pvalueAxisList)-1] + pvalueScale - pvalueAxisList.append(tempPvalueMax) - - #ZS: I don't understand this; the if statement will be true for any number that isn't exactly X.5. - #if abs(tempPvalueMax-pvalueMax) <0.5: - # tempPvalueMax=tempPvalueMax+1 - # pvalueAxisList.append(tempPvalueMax) - - #draw the "pvalue" string to the left of the axis - pvalueScaleFont=pid.Font(ttf="verdana", size=14*fontZoom, bold=0) - pvalueLODFont=pid.Font(ttf="verdana", size=14*zoom*1.5, bold=0) - yZero = yTopOffset + plotHeight - - #yAxis label display area - yAxis_label ='-log(P)' - canvas.drawString(yAxis_label, xLeftOffset - canvas.stringWidth("999.99", font=pvalueScaleFont) - 10*zoom, \ - yZero - 150, font=pvalueLODFont, color=pid.black, angle=90) - - for i,item in enumerate(pvalueAxisList): - ypvalue = yZero - (float(i)/float(len(pvalueAxisList) - 1)) * pvalueHeightThresh - canvas.drawLine(xLeftOffset, ypvalue, xLeftOffset - 4, ypvalue, color=self.LRS_COLOR, width=1*zoom) - scaleStr = "%2.1f" % item - #added by NL 6-24-2011:Y-axis scale display - canvas.drawString(scaleStr, xLeftOffset-4-canvas.stringWidth(scaleStr, font=pvalueScaleFont)-5, ypvalue+3, font=pvalueScaleFont, color=self.LRS_COLOR) - - ChrList=self.ChrList - startPosX = xLeftOffset - - for i, chr in enumerate(ChrList): - - if plinkResultDict.has_key(chr): - plinkresultList = plinkResultDict[chr] - - m = 0 - #add by NL 06-24-2011: for mahanttam plot - symbolFont = pid.Font(ttf="fnt_bs", size=5,bold=0) - # color for point in each chr - chrCount=len(ChrList) - chrColorDict =self.getColorForMarker(chrCount=chrCount,flag=1) - for j, item in enumerate(plinkresultList): - try : - mb=float(item[1])/1000000.0 - except: - mb=0 - - try : - pvalue =float(item[-1]) - except: - pvalue =1 - - try: - snpName = item[0] - except: - snpName='' - - formattedPvalue = -math.log10(pvalue) - - Xc = startPosX + (mb-startMb)*plotXScale - Yc = yZero - (formattedPvalue-pvalueMin)*pvalueHeightThresh/(tempPvalueMax - pvalueMin) - canvas.drawString("5", Xc-canvas.stringWidth("5",font=symbolFont)/2+1,Yc+2,color=chrColorDict[i], font=symbolFont) - m += 1 - - startPosX += (ChrLengthDistList[i]+GraphInterval)*plotXScale - - canvas.drawLine(xLeftOffset, yZero, xLeftOffset, yTopOffset, color=self.LRS_COLOR, width=1*zoom) #the blue line running up the y axis - - def drawQTL(self, canvas, drawAreaHeight, gifmap, plotXScale, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None): - - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - INTERCROSS = (self.genotype.type=="intercross") - - ChrLengthDistList = self.ChrLengthMbList - GraphInterval=self.GraphInterval - LRSHeightThresh = drawAreaHeight - AdditiveHeightThresh = drawAreaHeight/2 - DominanceHeightThresh = drawAreaHeight/2 - - #draw the LRS scale - #We first determine whether or not we are using a sliding scale. - #If so, we need to compute the maximum LRS value to determine where the max y-value should be, and call this LRSMax. - #LRSTop is then defined to be above the LRSMax by enough to add one additional LRSScale increment. - #if we are using a set-scale, then we set LRSTop to be the user's value, and LRSMax doesn't matter. - - if self.LRS_LOD == 'LOD': - lodm = self.LODFACTOR - else: - lodm = 1.0 - - if self.lrsMax <= 0: #sliding scale - LRSMax = max(map(max, self.qtlresults)).lrs - #genotype trait will give infinite LRS - LRSMax = min(LRSMax, webqtlConfig.MAXLRS) - LRSMax = max(self.significance, LRSMax) - else: - LRSMax = self.lrsMax*lodm - - if LRSMax/lodm > 100: - LRSScale = 20.0 - elif LRSMax/lodm > 20: - LRSScale = 5.0 - elif LRSMax/lodm > 7.5: - LRSScale = 2.5 - else: - LRSScale = 1.0 - - LRSAxisList = Plot.frange(LRSScale, LRSMax/lodm, LRSScale) - #make sure the user's value appears on the y-axis - #update by NL 6-21-2011: round the LOD value to 100 when LRSMax is equal to 460 - LRSAxisList.append(round(LRSMax/lodm)) - - #draw the "LRS" or "LOD" string to the left of the axis - LRSScaleFont=pid.Font(ttf="verdana", size=14*fontZoom, bold=0) - LRSLODFont=pid.Font(ttf="verdana", size=14*zoom*1.5, bold=0) - yZero = yTopOffset + plotHeight - - #yAxis label display area - canvas.drawString(self.LRS_LOD, xLeftOffset - canvas.stringWidth("999.99", font=LRSScaleFont) - 10*zoom, \ - yZero - 150, font=LRSLODFont, color=pid.black, angle=90) - - for item in LRSAxisList: - yLRS = yZero - (item*lodm/LRSMax) * LRSHeightThresh - canvas.drawLine(xLeftOffset, yLRS, xLeftOffset - 4, yLRS, color=self.LRS_COLOR, width=1*zoom) - scaleStr = "%2.1f" % item - #added by NL 6-24-2011:Y-axis scale display - canvas.drawString(scaleStr, xLeftOffset-4-canvas.stringWidth(scaleStr, font=LRSScaleFont)-5, yLRS+3, font=LRSScaleFont, color=self.LRS_COLOR) - - - #"Significant" and "Suggestive" Drawing Routine - # ======= Draw the thick lines for "Significant" and "Suggestive" ===== (crowell: I tried to make the SNPs draw over these lines, but piddle wouldn't have it...) - if self.permChecked and not self.multipleInterval: - significantY = yZero - self.significance*LRSHeightThresh/LRSMax - suggestiveY = yZero - self.suggestive*LRSHeightThresh/LRSMax - - - startPosX = xLeftOffset - for i, _chr in enumerate(self.genotype): - rightEdge = int(startPosX + self.ChrLengthDistList[i]*plotXScale - self.SUGGESTIVE_WIDTH/1.5) - #added by NL 6-24-2011:draw suggestive line (grey one) - canvas.drawLine(startPosX+self.SUGGESTIVE_WIDTH/1.5, suggestiveY, rightEdge, suggestiveY, color=self.SUGGESTIVE_COLOR, - width=self.SUGGESTIVE_WIDTH*zoom, clipX=(xLeftOffset, xLeftOffset + plotWidth-2)) - #added by NL 6-24-2011:draw significant line (pink one) - canvas.drawLine(startPosX+self.SUGGESTIVE_WIDTH/1.5, significantY, rightEdge, significantY, color=self.SIGNIFICANT_COLOR, - width=self.SIGNIFICANT_WIDTH*zoom, clipX=(xLeftOffset, xLeftOffset + plotWidth-2)) - sugg_coords = "%d, %d, %d, %d" % (startPosX, suggestiveY-2, rightEdge + 2*zoom, suggestiveY+2) - sig_coords = "%d, %d, %d, %d" % (startPosX, significantY-2, rightEdge + 2*zoom, significantY+2) - if self.LRS_LOD == 'LRS': - sugg_title = "Suggestive LRS = %0.2f" % self.suggestive - sig_title = "Significant LRS = %0.2f" % self.significance - else: - sugg_title = "Suggestive LOD = %0.2f" % (self.suggestive/4.61) - sig_title = "Significant LOD = %0.2f" % (self.significance/4.61) - Areas1 = HT.Area(shape='rect',coords=sugg_coords,title=sugg_title) - Areas2 = HT.Area(shape='rect',coords=sig_coords,title=sig_title) - gifmap.areas.append(Areas1) - gifmap.areas.append(Areas2) - - startPosX += (self.ChrLengthDistList[i]+self.GraphInterval)*plotXScale - - - if self.multipleInterval: - lrsEdgeWidth = 1 - else: - additiveMax = max(map(lambda X : abs(X.additive), self.qtlresults[0])) - if INTERCROSS: - dominanceMax = max(map(lambda X : abs(X.dominance), self.qtlresults[0])) - else: - dominanceMax = -1 - lrsEdgeWidth = 2 - for i, qtlresult in enumerate(self.qtlresults): - m = 0 - startPosX = xLeftOffset - thisLRSColor = self.colorCollection[i] - - #add by NL 06-24-2011: for mahanttam plot - symbolFont = pid.Font(ttf="fnt_bs", size=5,bold=0) - - for j, _chr in enumerate(self.genotype): - chrCount=len(self.genotype) - chrColorDict =self.getColorForMarker(chrCount=chrCount,flag=1) - LRSCoordXY = [] - AdditiveCoordXY = [] - DominanceCoordXY = [] - for k, _locus in enumerate(_chr): - if self.plotScale == 'physic': - Xc = startPosX + (_locus.Mb-startMb)*plotXScale - else: - Xc = startPosX + (_locus.cM-_chr[0].cM)*plotXScale - # updated by NL 06-18-2011: - # fix the over limit LRS graph issue since genotype trait may give infinite LRS; - # for any lrs is over than 460(LRS max in this system), it will be reset to 460 - if qtlresult[m].lrs> 460 or qtlresult[m].lrs=='inf': - Yc = yZero - webqtlConfig.MAXLRS*LRSHeightThresh/LRSMax - else: - Yc = yZero - qtlresult[m].lrs*LRSHeightThresh/LRSMax - - LRSCoordXY.append((Xc, Yc)) - #add by NL 06-24-2011: for mahanttam plot - #self.significance/4.61 consider chr and LOD - # significantY = yZero - self.significance*LRSHeightThresh/LRSMax - # if Yc >significantY: - # canvas.drawString(":", Xc-canvas.stringWidth(":",font=symbolFont)/2+1,Yc+2,color=pid.black, font=symbolFont) - # else: - # canvas.drawString(":", Xc-canvas.stringWidth(":",font=symbolFont)/2+1,Yc+2,color=pid.black, font=symbolFont) - - # add by NL 06-27-2011: eliminate imputed value when locus name is equal to '-' - if (qtlresult[m].locus.name) and (qtlresult[m].locus.name!=' - '): - canvas.drawString("5", Xc-canvas.stringWidth("5",font=symbolFont)/2+1,Yc+2,color=chrColorDict[j], font=symbolFont) - - if not self.multipleInterval and self.additiveChecked: - Yc = yZero - qtlresult[m].additive*AdditiveHeightThresh/additiveMax - AdditiveCoordXY.append((Xc, Yc)) - if not self.multipleInterval and INTERCROSS and self.additiveChecked: - Yc = yZero - qtlresult[m].dominance*DominanceHeightThresh/dominanceMax - DominanceCoordXY.append((Xc, Yc)) - m += 1 - - startPosX += (ChrLengthDistList[j]+GraphInterval)*plotXScale - - - ###draw additive scale - if not self.multipleInterval and self.additiveChecked: - additiveScaleFont=pid.Font(ttf="verdana",size=12*fontZoom,bold=0) - additiveScale = Plot.detScaleOld(0,additiveMax) - additiveStep = (additiveScale[1]-additiveScale[0])/additiveScale[2] - additiveAxisList = Plot.frange(0, additiveScale[1], additiveStep) - maxAdd = additiveScale[1] - addPlotScale = AdditiveHeightThresh/additiveMax - - additiveAxisList.append(additiveScale[1]) - for item in additiveAxisList: - additiveY = yZero - item*addPlotScale - canvas.drawLine(xLeftOffset + plotWidth,additiveY,xLeftOffset+4+ plotWidth,additiveY,color=self.ADDITIVE_COLOR_POSITIVE, width=1*zoom) - scaleStr = "%2.3f" % item - canvas.drawString(scaleStr,xLeftOffset + plotWidth +6,additiveY+5,font=additiveScaleFont,color=self.ADDITIVE_COLOR_POSITIVE) - - canvas.drawLine(xLeftOffset+plotWidth,additiveY,xLeftOffset+plotWidth,yZero,color=self.ADDITIVE_COLOR_POSITIVE, width=1*zoom) - - canvas.drawLine(xLeftOffset, yZero, xLeftOffset, yTopOffset, color=self.LRS_COLOR, width=1*zoom) #the blue line running up the y axis - - def drawGraphBackgroundForPLINK(self, canvas, gifmap, offset= (80, 120, 80, 50), zoom = 1, startMb = None, endMb = None,plinkResultDict={} ): - - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - #calculate plot scale - #XZ: all of these global variables should be passed from function signiture - ChrLengthDistList = self.ChrLengthMbList - drawRegionDistance = self.ChrLengthMbSum - GraphInterval=self.GraphInterval - ChrList =self.ChrList - - #multiple chromosome view - plotXScale = plotWidth / ((len(ChrList)-1)*GraphInterval + drawRegionDistance) - - startPosX = xLeftOffset - chrLabelFont=pid.Font(ttf="verdana",size=24*fontZoom,bold=0) - - for i, _chr in enumerate(ChrList): - - if (i % 2 == 0): - theBackColor = self.GRAPH_BACK_DARK_COLOR - else: - theBackColor = self.GRAPH_BACK_LIGHT_COLOR - # NL:resize chr width for drawing - if float(ChrLengthDistList[i])<90: - ChrLengthDistList[i]=90 - #draw the shaded boxes and the sig/sug thick lines - canvas.drawRect(startPosX, yTopOffset, startPosX + ChrLengthDistList[i]*plotXScale, \ - yTopOffset+plotHeight, edgeColor=pid.gainsboro,fillColor=theBackColor) - - chrNameWidth = canvas.stringWidth(_chr, font=chrLabelFont) - chrStartPix = startPosX + (ChrLengthDistList[i]*plotXScale -chrNameWidth)/2 - chrEndPix = startPosX + (ChrLengthDistList[i]*plotXScale +chrNameWidth)/2 - - canvas.drawString(_chr, chrStartPix, yTopOffset +20,font = chrLabelFont,color=pid.dimgray) - COORDS = "%d,%d,%d,%d" %(chrStartPix, yTopOffset, chrEndPix,yTopOffset +20) - - #add by NL 09-03-2010 - HREF = "javascript:changeView(%d,%s);" % (i,ChrLengthDistList) - Areas = HT.Area(shape='rect',coords=COORDS,href=HREF) - gifmap.areas.append(Areas) - startPosX += (ChrLengthDistList[i]+GraphInterval)*plotXScale - - return plotXScale - - - def drawGraphBackground(self, canvas, gifmap, offset= (80, 120, 80, 50), zoom = 1, startMb = None, endMb = None): - ##conditions - ##multiple Chromosome view - ##single Chromosome Physical - ##single Chromosome Genetic - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - #calculate plot scale - if self.plotScale != 'physic': - self.ChrLengthDistList = self.ChrLengthCMList - drawRegionDistance = self.ChrLengthCMSum - else: - self.ChrLengthDistList = self.ChrLengthMbList - drawRegionDistance = self.ChrLengthMbSum - - if self.selectedChr > -1: #single chromosome view - spacingAmt = plotWidth/13.5 - i = 0 - for startPix in Plot.frange(xLeftOffset, xLeftOffset+plotWidth, spacingAmt): - if (i % 2 == 0): - theBackColor = self.GRAPH_BACK_DARK_COLOR - else: - theBackColor = self.GRAPH_BACK_LIGHT_COLOR - i += 1 - canvas.drawRect(startPix, yTopOffset, min(startPix+spacingAmt, xLeftOffset+plotWidth), \ - yTopOffset+plotHeight, edgeColor=theBackColor, fillColor=theBackColor) - - drawRegionDistance = self.ChrLengthDistList[self.selectedChr] - self.ChrLengthDistList = [drawRegionDistance] - if self.plotScale == 'physic': - plotXScale = plotWidth / (endMb-startMb) - else: - plotXScale = plotWidth / drawRegionDistance - - else: #multiple chromosome view - plotXScale = plotWidth / ((len(self.genotype)-1)*self.GraphInterval + drawRegionDistance) - - startPosX = xLeftOffset - chrLabelFont=pid.Font(ttf="verdana",size=24*fontZoom,bold=0) - - for i, _chr in enumerate(self.genotype): - - if (i % 2 == 0): - theBackColor = self.GRAPH_BACK_DARK_COLOR - else: - theBackColor = self.GRAPH_BACK_LIGHT_COLOR - - #draw the shaded boxes and the sig/sug thick lines - canvas.drawRect(startPosX, yTopOffset, startPosX + self.ChrLengthDistList[i]*plotXScale, \ - yTopOffset+plotHeight, edgeColor=pid.gainsboro,fillColor=theBackColor) - - chrNameWidth = canvas.stringWidth(_chr.name, font=chrLabelFont) - chrStartPix = startPosX + (self.ChrLengthDistList[i]*plotXScale -chrNameWidth)/2 - chrEndPix = startPosX + (self.ChrLengthDistList[i]*plotXScale +chrNameWidth)/2 - - canvas.drawString(_chr.name, chrStartPix, yTopOffset +20,font = chrLabelFont,color=pid.dimgray) - COORDS = "%d,%d,%d,%d" %(chrStartPix, yTopOffset, chrEndPix,yTopOffset +20) - - #add by NL 09-03-2010 - HREF = "javascript:changeView(%d,%s);" % (i,self.ChrLengthMbList) - Areas = HT.Area(shape='rect',coords=COORDS,href=HREF) - gifmap.areas.append(Areas) - startPosX += (self.ChrLengthDistList[i]+self.GraphInterval)*plotXScale - - return plotXScale - - # XZ: The only difference of function drawXAxisForPLINK and function drawXAxis are the function name and the self.plotScale condition. - def drawXAxisForPLINK(self, fd, canvas, drawAreaHeight, gifmap, plotXScale, showLocusForm, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None): - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - yZero = canvas.size[1] - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - #Parameters - ChrLengthDistList = self.ChrLengthMbList - GraphInterval=self.GraphInterval - - NUM_MINOR_TICKS = 5 # Number of minor ticks between major ticks - X_MAJOR_TICK_THICKNESS = 2 - X_MINOR_TICK_THICKNESS = 1 - X_AXIS_THICKNESS = 1*zoom - - # ======= Alex: Draw the X-axis labels (megabase location) - MBLabelFont = pid.Font(ttf="verdana", size=12*fontZoom, bold=0) - xMajorTickHeight = 15 # How high the tick extends below the axis - xMinorTickHeight = 5*zoom - xAxisTickMarkColor = pid.black - xAxisLabelColor = pid.black - fontHeight = 12*fontZoom # How tall the font that we're using is - spacingFromLabelToAxis = 20 - spacingFromLineToLabel = 3 - - if self.plotScale == 'physic': - strYLoc = yZero + spacingFromLabelToAxis + canvas.fontHeight(MBLabelFont) - ###Physical single chromosome view - if self.selectedChr > -1: - graphMbWidth = endMb - startMb - XScale = Plot.detScale(startMb, endMb) - XStart, XEnd, XStep = XScale - if XStep < 8: - XStep *= 2 - spacingAmtX = spacingAmt = (XEnd-XStart)/XStep - - j = 0 - while abs(spacingAmtX -int(spacingAmtX)) >= spacingAmtX/100.0 and j < 6: - j += 1 - spacingAmtX *= 10 - - formatStr = '%%2.%df' % j - - for counter, _Mb in enumerate(Plot.frange(XStart, XEnd, spacingAmt / NUM_MINOR_TICKS)): - if _Mb < startMb or _Mb > endMb: - continue - Xc = xLeftOffset + plotXScale*(_Mb - startMb) - if counter % NUM_MINOR_TICKS == 0: # Draw a MAJOR mark, not just a minor tick mark - canvas.drawLine(Xc, yZero, Xc, yZero+xMajorTickHeight, color=xAxisTickMarkColor, width=X_MAJOR_TICK_THICKNESS) # Draw the MAJOR tick mark - labelStr = str(formatStr % _Mb) # What Mbase location to put on the label - strWidth = canvas.stringWidth(labelStr, font=MBLabelFont) - drawStringXc = (Xc - (strWidth / 2.0)) - canvas.drawString(labelStr, drawStringXc, strYLoc, font=MBLabelFont, color=xAxisLabelColor, angle=0) - else: - canvas.drawLine(Xc, yZero, Xc, yZero+xMinorTickHeight, color=xAxisTickMarkColor, width=X_MINOR_TICK_THICKNESS) # Draw the MINOR tick mark - # end else - - ###Physical genome wide view - else: - distScale = 0 - startPosX = xLeftOffset - for i, distLen in enumerate(ChrLengthDistList): - if distScale == 0: #universal scale in whole genome mapping - if distLen > 75: - distScale = 25 - elif distLen > 30: - distScale = 10 - else: - distScale = 5 - for tickdists in range(distScale, ceil(distLen), distScale): - canvas.drawLine(startPosX + tickdists*plotXScale, yZero, startPosX + tickdists*plotXScale, yZero + 7, color=pid.black, width=1*zoom) - canvas.drawString(str(tickdists), startPosX+tickdists*plotXScale, yZero + 10*zoom, color=pid.black, font=MBLabelFont, angle=270) - startPosX += (ChrLengthDistList[i]+GraphInterval)*plotXScale - - megabaseLabelFont = pid.Font(ttf="verdana", size=14*zoom*1.5, bold=0) - canvas.drawString("Megabases", xLeftOffset + (plotWidth -canvas.stringWidth("Megabases", font=megabaseLabelFont))/2, - strYLoc + canvas.fontHeight(MBLabelFont) + 5*zoom, font=megabaseLabelFont, color=pid.black) - pass - - canvas.drawLine(xLeftOffset, yZero, xLeftOffset+plotWidth, yZero, color=pid.black, width=X_AXIS_THICKNESS) # Draw the X axis itself - - def drawXAxis(self, fd, canvas, drawAreaHeight, gifmap, plotXScale, showLocusForm, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None): - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - yZero = canvas.size[1] - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - #Parameters - NUM_MINOR_TICKS = 5 # Number of minor ticks between major ticks - X_MAJOR_TICK_THICKNESS = 2 - X_MINOR_TICK_THICKNESS = 1 - X_AXIS_THICKNESS = 1*zoom - - # ======= Alex: Draw the X-axis labels (megabase location) - MBLabelFont = pid.Font(ttf="verdana", size=12*fontZoom, bold=0) - xMajorTickHeight = 15 # How high the tick extends below the axis - xMinorTickHeight = 5*zoom - xAxisTickMarkColor = pid.black - xAxisLabelColor = pid.black - fontHeight = 12*fontZoom # How tall the font that we're using is - spacingFromLabelToAxis = 20 - spacingFromLineToLabel = 3 - - if self.plotScale == 'physic': - strYLoc = yZero + spacingFromLabelToAxis + canvas.fontHeight(MBLabelFont) - ###Physical single chromosome view - if self.selectedChr > -1: - graphMbWidth = endMb - startMb - XScale = Plot.detScale(startMb, endMb) - XStart, XEnd, XStep = XScale - if XStep < 8: - XStep *= 2 - spacingAmtX = spacingAmt = (XEnd-XStart)/XStep - - j = 0 - while abs(spacingAmtX -int(spacingAmtX)) >= spacingAmtX/100.0 and j < 6: - j += 1 - spacingAmtX *= 10 - - formatStr = '%%2.%df' % j - - for counter, _Mb in enumerate(Plot.frange(XStart, XEnd, spacingAmt / NUM_MINOR_TICKS)): - if _Mb < startMb or _Mb > endMb: - continue - Xc = xLeftOffset + plotXScale*(_Mb - startMb) - if counter % NUM_MINOR_TICKS == 0: # Draw a MAJOR mark, not just a minor tick mark - canvas.drawLine(Xc, yZero, Xc, yZero+xMajorTickHeight, color=xAxisTickMarkColor, width=X_MAJOR_TICK_THICKNESS) # Draw the MAJOR tick mark - labelStr = str(formatStr % _Mb) # What Mbase location to put on the label - strWidth = canvas.stringWidth(labelStr, font=MBLabelFont) - drawStringXc = (Xc - (strWidth / 2.0)) - canvas.drawString(labelStr, drawStringXc, strYLoc, font=MBLabelFont, color=xAxisLabelColor, angle=0) - else: - canvas.drawLine(Xc, yZero, Xc, yZero+xMinorTickHeight, color=xAxisTickMarkColor, width=X_MINOR_TICK_THICKNESS) # Draw the MINOR tick mark - # end else - - ###Physical genome wide view - else: - distScale = 0 - startPosX = xLeftOffset - for i, distLen in enumerate(self.ChrLengthDistList): - if distScale == 0: #universal scale in whole genome mapping - if distLen > 75: - distScale = 25 - elif distLen > 30: - distScale = 10 - else: - distScale = 5 - for tickdists in range(distScale, ceil(distLen), distScale): - canvas.drawLine(startPosX + tickdists*plotXScale, yZero, startPosX + tickdists*plotXScale, yZero + 7, color=pid.black, width=1*zoom) - canvas.drawString(str(tickdists), startPosX+tickdists*plotXScale, yZero + 10*zoom, color=pid.black, font=MBLabelFont, angle=270) - startPosX += (self.ChrLengthDistList[i]+self.GraphInterval)*plotXScale - - megabaseLabelFont = pid.Font(ttf="verdana", size=14*zoom*1.5, bold=0) - canvas.drawString("Megabases", xLeftOffset + (plotWidth -canvas.stringWidth("Megabases", font=megabaseLabelFont))/2, - strYLoc + canvas.fontHeight(MBLabelFont) + 5*zoom, font=megabaseLabelFont, color=pid.black) - pass - else: - ChrAInfo = [] - preLpos = -1 - distinctCount = 0.0 - if len(self.genotype) > 1: - for i, _chr in enumerate(self.genotype): - thisChr = [] - Locus0CM = _chr[0].cM - nLoci = len(_chr) - if nLoci <= 8: - for _locus in _chr: - if _locus.name != ' - ': - if _locus.cM != preLpos: - distinctCount += 1 - preLpos = _locus.cM - thisChr.append([_locus.name, _locus.cM-Locus0CM]) - else: - for j in (0, nLoci/4, nLoci/2, nLoci*3/4, -1): - while _chr[j].name == ' - ': - j += 1 - if _chr[j].cM != preLpos: - distinctCount += 1 - preLpos = _chr[j].cM - thisChr.append([_chr[j].name, _chr[j].cM-Locus0CM]) - ChrAInfo.append(thisChr) - else: - for i, _chr in enumerate(self.genotype): - thisChr = [] - Locus0CM = _chr[0].cM - for _locus in _chr: - if _locus.name != ' - ': - if _locus.cM != preLpos: - distinctCount += 1 - preLpos = _locus.cM - thisChr.append([_locus.name, _locus.cM-Locus0CM]) - ChrAInfo.append(thisChr) - - stepA = (plotWidth+0.0)/distinctCount - - LRectWidth = 10 - LRectHeight = 3 - offsetA = -stepA - lineColor = pid.lightblue - startPosX = xLeftOffset - for j, ChrInfo in enumerate(ChrAInfo): - preLpos = -1 - for i, item in enumerate(ChrInfo): - Lname,Lpos = item - if Lpos != preLpos: - offsetA += stepA - differ = 1 - else: - differ = 0 - preLpos = Lpos - Lpos *= plotXScale - if self.selectedChr > -1: - Zorder = i % 5 - else: - Zorder = 0 - if differ: - canvas.drawLine(startPosX+Lpos,yZero,xLeftOffset+offsetA,\ - yZero+25, color=lineColor) - canvas.drawLine(xLeftOffset+offsetA,yZero+25,xLeftOffset+offsetA,\ - yZero+40+Zorder*(LRectWidth+3),color=lineColor) - rectColor = pid.orange - else: - canvas.drawLine(xLeftOffset+offsetA, yZero+40+Zorder*(LRectWidth+3)-3,\ - xLeftOffset+offsetA, yZero+40+Zorder*(LRectWidth+3),color=lineColor) - rectColor = pid.deeppink - canvas.drawRect(xLeftOffset+offsetA, yZero+40+Zorder*(LRectWidth+3),\ - xLeftOffset+offsetA-LRectHeight,yZero+40+Zorder*(LRectWidth+3)+LRectWidth,\ - edgeColor=rectColor,fillColor=rectColor,edgeWidth = 0) - COORDS="%d,%d,%d,%d"%(xLeftOffset+offsetA-LRectHeight, yZero+40+Zorder*(LRectWidth+3),\ - xLeftOffset+offsetA,yZero+40+Zorder*(LRectWidth+3)+LRectWidth) - HREF="javascript:showDatabase3('%s','%s','%s','');" % (showLocusForm,fd.RISet+"Geno", Lname) - Areas=HT.Area(shape='rect',coords=COORDS,href=HREF, title="Locus : " + Lname) - gifmap.areas.append(Areas) - ##piddle bug - if j == 0: - canvas.drawLine(startPosX,yZero,startPosX,yZero+40, color=lineColor) - startPosX += (self.ChrLengthDistList[j]+self.GraphInterval)*plotXScale - - canvas.drawLine(xLeftOffset, yZero, xLeftOffset+plotWidth, yZero, color=pid.black, width=X_AXIS_THICKNESS) # Draw the X axis itself - - def getColorForMarker(self, chrCount,flag):# no change is needed - chrColorDict={} - for i in range(chrCount): - if flag==1: # display blue and lightblue intercross - chrColorDict[i]=pid.black - elif flag==0: - if (i%2==0): - chrColorDict[i]=pid.blue - else: - chrColorDict[i]=pid.lightblue - else:#display different color for different chr - if i in [0,8,16]: - chrColorDict[i]=pid.black - elif i in [1,9,17]: - chrColorDict[i]=pid.red - elif i in [2,10,18]: - chrColorDict[i]=pid.lightgreen - elif i in [3,11,19]: - chrColorDict[i]=pid.blue - elif i in [4,12]: - chrColorDict[i]=pid.lightblue - elif i in [5,13]: - chrColorDict[i]=pid.hotpink - elif i in [6,14]: - chrColorDict[i]=pid.gold - elif i in [7,15]: - chrColorDict[i]=pid.grey - - return chrColorDict - - - def drawProbeSetPosition(self, canvas, plotXScale, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None): - if len(self.traitList) != 1: - return - - xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset - plotWidth = canvas.size[0] - xLeftOffset - xRightOffset - plotHeight = canvas.size[1] - yTopOffset - yBottomOffset - yZero = canvas.size[1] - yBottomOffset - fontZoom = zoom - if zoom == 2: - fontZoom = 1.5 - - try: - Chr = self.traitList[0].chr # self.traitListChr =self.traitList[0].chr=_vals need to change to chrList and mbList - Mb = self.traitList[0].mb # self.traitListMb =self.traitList[0].mb=_vals - except: - return - - if self.plotScale == 'physic': - if self.selectedChr > -1: - if self.genotype[0].name != Chr or Mb < self.startMb or Mb > self.endMb: - return - else: - locPixel = xLeftOffset + (Mb-self.startMb)*plotXScale - else: - locPixel = xLeftOffset - for i, _chr in enumerate(self.genotype): - if _chr.name != Chr: - locPixel += (self.ChrLengthDistList[i] + self.GraphInterval)*plotXScale - else: - locPixel += Mb*plotXScale - break - else: - if self.selectedChr > -1: - if self.genotype[0].name != Chr: - return - else: - for i, _locus in enumerate(self.genotype[0]): - #the trait's position is on the left of the first genotype - if i==0 and _locus.Mb >= Mb: - locPixel=-1 - break - - #the trait's position is between two traits - if i > 0 and self.genotype[0][i-1].Mb < Mb and _locus.Mb >= Mb: - locPixel = xLeftOffset + plotXScale*(self.genotype[0][i-1].cM+(_locus.cM-self.genotype[0][i-1].cM)*(Mb -self.genotype[0][i-1].Mb)/(_locus.Mb-self.genotype[0][i-1].Mb)) - break - - #the trait's position is on the right of the last genotype - if i==len(self.genotype[0]) and Mb>=_locus.Mb: - locPixel = -1 - else: - locPixel = xLeftOffset - for i, _chr in enumerate(self.genotype): - if _chr.name != Chr: - locPixel += (self.ChrLengthDistList[i] + self.GraphInterval)*plotXScale - else: - locPixel += (Mb*(_chr[-1].cM-_chr[0].cM)/self.ChrLengthCMList[i])*plotXScale - break - if locPixel >= 0: - traitPixel = ((locPixel, yZero), (locPixel-6, yZero+12), (locPixel+6, yZero+12)) - canvas.drawPolygon(traitPixel, edgeColor=pid.black, fillColor=self.TRANSCRIPT_LOCATION_COLOR, closed=1) - - if self.legendChecked: - startPosY = 15 - nCol = 2 - smallLabelFont = pid.Font(ttf="trebuc", size=12, bold=1) - leftOffset = xLeftOffset+(nCol-1)*200 - canvas.drawPolygon(((leftOffset+6, startPosY-6), (leftOffset, startPosY+6), (leftOffset+12, startPosY+6)), edgeColor=pid.black, fillColor=self.TRANSCRIPT_LOCATION_COLOR, closed=1) - canvas.drawString("Sequence Site", (leftOffset+15), (startPosY+5), smallLabelFont, self.TOP_RIGHT_INFO_COLOR) - - # build dict based on plink result, key is chr, value is list of [snp,BP,pValue] - def getPlinkResultDict(self,outputFileName='',thresholdPvalue=-1,ChrOrderIdNameDict={}): - - ChrList =self.ChrList - plinkResultDict={} - - plinkResultfp = open("%s%s.qassoc"% (webqtlConfig.TMPDIR, outputFileName), "rb") - - headerLine=plinkResultfp.readline()# read header line - line = plinkResultfp.readline() - - valueList=[] # initialize value list, this list will include snp, bp and pvalue info - pValueList=[] - count=0 - - while line: - #convert line from str to list - lineList=self.buildLineList(line=line) - - # only keep the records whose chromosome name is in db - if ChrOrderIdNameDict.has_key(int(lineList[0])) and lineList[-1] and lineList[-1].strip()!='NA': - - chrName=ChrOrderIdNameDict[int(lineList[0])] - snp = lineList[1] - BP = lineList[2] - pValue = float(lineList[-1]) - pValueList.append(pValue) - - if plinkResultDict.has_key(chrName): - valueList=plinkResultDict[chrName] - - # pvalue range is [0,1] - if thresholdPvalue >=0 and thresholdPvalue<=1: - if pValue < thresholdPvalue: - valueList.append((snp,BP,pValue)) - count+=1 - - plinkResultDict[chrName]=valueList - valueList=[] - else: - if thresholdPvalue>=0 and thresholdPvalue<=1: - if pValue < thresholdPvalue: - valueList.append((snp,BP,pValue)) - count+=1 - - if valueList: - plinkResultDict[chrName]=valueList - - valueList=[] - - - line =plinkResultfp.readline() - else: - line=plinkResultfp.readline() - - if pValueList: - minPvalue= min(pValueList) - else: - minPvalue=0 - - return count,minPvalue,plinkResultDict - - - ###################################################### - # input: line: str,one line read from file - # function: convert line from str to list; - # output: lineList list - ####################################################### - def buildLineList(self,line=None): - - lineList = string.split(string.strip(line),' ')# irregular number of whitespaces between columns - lineList =[ item for item in lineList if item <>''] - lineList = map(string.strip, lineList) - - return lineList - - #added by NL: automatically generate pheno txt file for PLINK based on strainList passed from dataEditing page - def genPhenoTxtFileForPlink(self,phenoFileName='', RISetName='', probesetName='', valueDict={}): - pedFileStrainList=self.getStrainNameFromPedFile(RISetName=RISetName) - outputFile = open("%s%s.txt"%(webqtlConfig.TMPDIR,phenoFileName),"wb") - headerLine = 'FID\tIID\t%s\n'%probesetName - outputFile.write(headerLine) - - newValueList=[] - - #if valueDict does not include some strain, value will be set to -9999 as missing value - for item in pedFileStrainList: - try: - value=valueDict[item] - value=str(value).replace('value=','') - value=value.strip() - except: - value=-9999 - - newValueList.append(value) - - - newLine='' - for i, strain in enumerate(pedFileStrainList): - j=i+1 - value=newValueList[i] - newLine+='%s\t%s\t%s\n'%(strain, strain, value) - - if j%1000==0: - outputFile.write(newLine) - newLine='' - - if newLine: - outputFile.write(newLine) - - outputFile.close() - - # get strain name from ped file in order - def getStrainNameFromPedFile(self, RISetName=''): - pedFileopen= open("%splink/%s.ped"%(webqtlConfig.HTMLPATH, RISetName),"r") - line =pedFileopen.readline() - strainNameList=[] - - while line: - lineList=string.split(string.strip(line),'\t') - lineList=map(string.strip,lineList) - - strainName=lineList[0] - strainNameList.append(strainName) - - line =pedFileopen.readline() - - return strainNameList - - ################################################################# - ## Generate Chr list, Chr OrderId and Retrieve Length Information - ################################################################# - #def getChrNameOrderIdLength(self,RISet=''): - # - # try: - # query = """ - # Select - # Chr_Length.Name,Chr_Length.OrderId,Length from Chr_Length, InbredSet - # where - # Chr_Length.SpeciesId = InbredSet.SpeciesId AND - # InbredSet.Name = '%s' - # Order by OrderId - # """ % (RISet) - # self.cursor.execute(query) - # - # results =self.cursor.fetchall() - # ChrList=[] - # ChrLengthMbList=[] - # ChrNameOrderIdDict={} - # ChrOrderIdNameDict={} - # - # for item in results: - # ChrList.append(item[0]) - # ChrNameOrderIdDict[item[0]]=item[1] # key is chr name, value is orderId - # ChrOrderIdNameDict[item[1]]=item[0] # key is orderId, value is chr name - # ChrLengthMbList.append(item[2]) + def trim_genotypes(self, genotype_data, no_value_samples): + trimmed_genotype_data = [] + for marker in genotype_data: + new_genotypes = [] + for item_count, genotype in enumerate(marker): + if item_count in no_value_samples: + continue + try: + genotype = float(genotype) + except ValueError: + genotype = np.nan + pass + new_genotypes.append(genotype) + trimmed_genotype_data.append(new_genotypes) + return trimmed_genotype_data + +def create_snp_iterator_file(group): + plink_file_base = os.path.join(webqtlConfig.PYLMM_PATH, group) + plink_input = input.plink(plink_file_base, type='b') + + data = dict(plink_input = list(plink_input), + numSNPs = plink_input.numSNPs) + + #input_dict = {} # - # except: - # ChrList=[] - # ChrNameOrderIdDict={} - # ChrLengthMbList=[] + #input_dict['plink_input'] = list(plink_input) + #input_dict['numSNPs'] = plink_input.numSNPs # - # return ChrList,ChrNameOrderIdDict,ChrOrderIdNameDict,ChrLengthMbList -
\ No newline at end of file + + snp_file_base = os.path.join(webqtlConfig.SNP_PATH, group + ".snps.gz") + + with gzip.open(snp_file_base, "wb") as fh: + pickle.dump(data, fh, pickle.HIGHEST_PROTOCOL) + +if __name__ == '__main__': + import cPickle as pickle + import gzip + create_snp_iterator_file("HLC") diff --git a/wqflask/wqflask/model.py b/wqflask/wqflask/model.py new file mode 100644 index 00000000..5beba9ff --- /dev/null +++ b/wqflask/wqflask/model.py @@ -0,0 +1,67 @@ +from __future__ import print_function, division, absolute_import + +from flask.ext.sqlalchemy import SQLAlchemy +from flask.ext.security import Security, SQLAlchemyUserDatastore, UserMixin, RoleMixin + +from wqflask import app + +# Create database connection object +db = SQLAlchemy(app) + +# Is this right? -Sam +#from sqlalchemy.ext.declarative import declarative_base +#Base = declarative_base() + +#@classmethod +#def get(cls, key): +# """Convenience get method using the primary key +# +# If record doesn't exist, returns None +# +# Allows the following: User.get('121') +# +# """ +# print("in get cls is:", cls) +# print(" key is {} : {}".format(type(key), key)) +# query = db.Model.query(cls) +# print("query is: ", query) +# record = query.get(key) +# return record +# +# +#print("db.Model is:", vars(db.Model)) +#db.Model.get = get + +# Define models +roles_users = db.Table('roles_users', + db.Column('user_id', db.Integer(), db.ForeignKey('user.id')), + db.Column('role_id', db.Integer(), db.ForeignKey('role.id'))) + +class Role(db.Model, RoleMixin): + id = db.Column(db.Integer(), primary_key=True) + name = db.Column(db.String(80), unique=True) + description = db.Column(db.String(255)) + +class User(db.Model, UserMixin): + id = db.Column(db.Integer(), primary_key=True) + email = db.Column(db.String(255), unique=True) + password = db.Column(db.String(255)) + active = db.Column(db.Boolean()) + confirmed_at = db.Column(db.DateTime()) + + last_login_at = db.Column(db.DateTime()) + current_login_at = db.Column(db.DateTime()) + last_login_ip = db.Column(db.String(39)) + current_login_ip = db.Column(db.String(39)) + login_count = db.Column(db.Integer()) + + roles = db.relationship('Role', secondary=roles_users, + backref=db.backref('users', lazy='dynamic')) + +# Setup Flask-Security +user_datastore = SQLAlchemyUserDatastore(db, User, Role) +security = Security(app, user_datastore) + +db.metadata.create_all(db.engine) + +user_datastore.create_role(name="Genentech", description="Genentech Beta Project(testing)") diff --git a/wqflask/wqflask/my_pylmm/__init__.py b/wqflask/wqflask/my_pylmm/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/wqflask/wqflask/my_pylmm/__init__.py diff --git a/wqflask/wqflask/my_pylmm/data/__init__.py b/wqflask/wqflask/my_pylmm/data/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/wqflask/wqflask/my_pylmm/data/__init__.py diff --git a/wqflask/wqflask/my_pylmm/data/genofile_parser.py b/wqflask/wqflask/my_pylmm/data/genofile_parser.py new file mode 100644 index 00000000..b926592b --- /dev/null +++ b/wqflask/wqflask/my_pylmm/data/genofile_parser.py @@ -0,0 +1,175 @@ +#!/usr/bin/python + +from __future__ import print_function, division, absolute_import +import sys +sys.path.append("..") +import os +import glob +import traceback + +import numpy as np +from pyLMM import lmm + +import simplejson as json + +from pprint import pformat as pf + +class EmptyConfigurations(Exception): pass + + + +class Marker(object): + def __init__(self): + self.name = None + self.chr = None + self.cM = None + self.Mb = None + self.genotypes = [] + +class ConvertGenoFile(object): + + def __init__(self, input_file, output_file): + + self.input_file = input_file + self.output_file = output_file + + self.mb_exists = False + self.markers = [] + + self.latest_row_pos = None + self.latest_col_pos = None + + self.latest_row_value = None + self.latest_col_value = None + + def convert(self): + + self.haplotype_notation = { + '@mat': "1", + '@pat': "0", + '@het': "0.5", + '@unk': "NA" + } + + self.configurations = {} + #self.skipped_cols = 3 + + self.input_fh = open(self.input_file) + + with open(self.output_file, "w") as self.output_fh: + #if self.file_type == "geno": + self.process_csv() + #elif self.file_type == "snps": + # self.process_snps_file() + + + #def process_row(self, row): + # counter = 0 + # for char in row: + # if char + # counter += 1 + + + def process_csv(self): + for row_count, row in enumerate(self.process_rows()): + #self.latest_row_pos = row_count + + row_items = row.split() + + this_marker = Marker() + this_marker.name = row_items[1] + this_marker.chr = row_items[0] + this_marker.cM = row_items[2] + if self.mb_exists: + this_marker.Mb = row_items[3] + genotypes = row_items[4:] + else: + genotypes = row_items[3:] + for item_count, genotype in enumerate(genotypes): + if genotype.upper() in self.configurations: + this_marker.genotypes.append(self.configurations[genotype.upper()]) + else: + this_marker.genotypes.append("NA") + + #print("this_marker is:", pf(this_marker.__dict__)) + + self.markers.append(this_marker.__dict__) + + with open(self.output_file, 'w') as fh: + json.dump(self.markers, fh, indent=" ", sort_keys=True) + + # print('configurations:', str(configurations)) + #self.latest_col_pos = item_count + self.skipped_cols + #self.latest_col_value = item + + #if item_count != 0: + # self.output_fh.write(" ") + #self.output_fh.write(self.configurations[item.upper()]) + + #self.output_fh.write("\n") + + + def process_rows(self): + for self.latest_row_pos, row in enumerate(self.input_fh): + self.latest_row_value = row + # Take care of headers + if not row.strip(): + continue + if row.startswith('#'): + continue + if row.startswith('Chr'): + if 'Mb' in row.split(): + self.mb_exists = True + continue + if row.startswith('@'): + key, _separater, value = row.partition(':') + key = key.strip() + value = value.strip() + if key in self.haplotype_notation: + self.configurations[value] = self.haplotype_notation[key] + continue + if not len(self.configurations): + raise EmptyConfigurations + yield row + + @classmethod + def process_all(cls, old_directory, new_directory): + os.chdir(old_directory) + for input_file in glob.glob("*.geno"): + group_name = input_file.split('.')[0] + output_file = os.path.join(new_directory, group_name + ".json") + print("%s -> %s" % ( + os.path.join(old_directory, input_file), output_file)) + convertob = ConvertGenoFile(input_file, output_file) + try: + convertob.convert() + except EmptyConfigurations as why: + print(" No config info? Continuing...") + #excepted = True + continue + except Exception as why: + + print(" Exception:", why) + print(traceback.print_exc()) + print(" Found in row %s at tabular column %s" % (convertob.latest_row_pos, + convertob.latest_col_pos)) + print(" Column is:", convertob.latest_col_value) + print(" Row is:", convertob.latest_row_value) + break + + #def process_snps_file(cls, snps_file, new_directory): + # output_file = os.path.join(new_directory, "mouse_families.json") + # print("%s -> %s" % (snps_file, output_file)) + # convertob = ConvertGenoFile(input_file, output_file) + + + +if __name__=="__main__": + Old_Geno_Directory = """/home/zas1024/gene/web/genotypes/""" + New_Geno_Directory = """/home/zas1024/gene/web/new_genotypes/""" + #Input_File = """/home/zas1024/gene/web/genotypes/BXD.geno""" + #Output_File = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/bxd.snps""" + ConvertGenoFile.process_all(Old_Geno_Directory, New_Geno_Directory) + #ConvertGenoFiles(Geno_Directory) + + #process_csv(Input_File, Output_File)
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/data/prep_data.py b/wqflask/wqflask/my_pylmm/data/prep_data.py new file mode 100644 index 00000000..ef42a297 --- /dev/null +++ b/wqflask/wqflask/my_pylmm/data/prep_data.py @@ -0,0 +1,80 @@ +#!/usr/bin/python + +from __future__ import absolute_import, print_function, division +import os + +import numpy + +from base import webqtlConfig + + +class PrepData(object): + def __init__(self, pheno_vector, group_name): + self.pheno_vector = pheno_vector + self.group_name = group_name + self.no_val_samples = set() + #self.identify_no_genotype_samples() + self.identify_empty_samples() + self.trim_files() + + def identify_empty_samples(self): + for sample_count, val in enumerate(self.pheno_vector): + if val == "x": + self.no_val_samples.add(sample_count) + print("self.no_val_samples:", self.no_val_samples) + #nums = set(range(0, 176)) + #print("not included:", nums-self.empty_columns) + + #def identify_no_genotype_samples(self): + # #for this_file in (self.exprs_file, self.snps_file): + # #with open(this_file) as fh: + # no_geno_samples = [] + # has_genotypes = False + # with open(self.snps_file) as fh: + # for line in fh: + # num_samples = len(line.split()) + # break + # for sample in range (num_samples): + # for line in fh: + # if line.split()[sample] != "NA": + # has_genotypes = True + # break + # if has_genotypes == False: + # no_geno_samples.append(sample) + # + # print(no_geno_samples) + + def trim_files(self): + input_file = open(os.path.join(webqtlConfig.NEWGENODIR, self.group_name+'.snps')) + output_file = os.path.join(webqtlConfig.TMPDIR, self.group_name + '.snps.new') + with open(output_file, "w") as output_file: + for line in input_file: + data_to_write = [] + for pos, item in enumerate(line.split()): + if pos in self.no_val_samples: + continue + else: + data_to_write.append("%s" % (item)) + output_file.write(" ".join(data_to_write) + "\n") + + print("Done writing:", output_file) + + #for this_file in (self.exprs_file, self.genotype_file): + # input_file = open(this_file) + # this_file_name_output = this_file + ".new" + # with open(this_file_name_output, "w") as output_file: + # for line in input_file: + # data_wanted = [] + # for pos, item in enumerate(line.split()): + # if pos in self.empty_columns: + # continue + # else: + # data_wanted.append("%2s" % (item)) + # #print("data_wanted is", data_wanted) + # output_file.write(" ".join(data_wanted) + "\n") + # print("Done writing file:", this_file_name_output) + +if __name__=="__main__": + exprs_file = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/mdp.exprs.1""" + genotype_file = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/mdp.snps.1000""" + PrepData(pheno_vector, genotype_file)
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/example.py b/wqflask/wqflask/my_pylmm/example.py new file mode 100644 index 00000000..8b30debd --- /dev/null +++ b/wqflask/wqflask/my_pylmm/example.py @@ -0,0 +1,58 @@ +#!/usr/bin/python + +from __future__ import absolute_import, print_function, division + +import sys +import time + +import numpy as np +from pyLMM import lmm + +from pprint import pformat as pf + + +Y = np.genfromtxt('data/mdp.exprs.1.new') +print("exprs is:", pf(Y.shape)) + +# Loading npdump and first 1000 snps for speed +#K = np.load('data/hmdp.liver.K.npdump') +#snps = np.load('data/hmdp.liver.snps.1000.npdump').T + +# These three lines will load all SNPs (from npdump or from txt) and +# calculate the kinship +snps = np.genfromtxt('/home/zas1024/gene/web/new_genotypers/mdp.snps.1000.new').T +print("snps is:", pf(snps.shape)) +#snps = snps[~np.isnan(snps).all(axis=1)] +#print ("snps is now:", pf(snps)) +np.savetxt("/home/zas1024/gene/wqflask/wqflask/pylmm/data/mdp.snps.trimmed", snps, fmt='%s', delimiter=' ') +#snps = np.load('data/hmdp.liver.snps.npdump').T +K = lmm.calculateKinship(snps) +#print("K is:", pf(K)) +#print("Y is:", pf(Y.shape)) + +# Instantiate a LMM object for the phentoype Y and fit the null model +L = lmm.LMM(Y,K) +L.fit() + +# Manually calculate the association at one SNP +X = snps[:,0] +X[np.isnan(X)] = X[True - np.isnan(X)].mean() # Fill missing with MAF +X = X.reshape(len(X),1) +if X.var() == 0: ts,ps = (np.nan,np.nan) +else: ts,ps = L.association(X) + +# If I want to refit the variance component +L.fit(X=X) +ts,ps = L.association(X) + +# If I want to do a genome-wide scan over the 1000 SNPs. +# This call will use REML (REML = False means use ML). +# It will also refit the variance components for each SNP. +# Setting refit = False will cause the program to fit the model once +# and hold those variance component estimates for each SNP. +begin = time.time() +TS,PS = lmm.GWAS(Y,snps,K,REML=True,refit=False) +print("TS is:", pf(TS)) +print("PS is:", pf(PS)) +end = time.time() +sys.stderr.write("Total time for 1000 SNPs: %0.3f\n" % (end- begin))
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/pyLMM/__init__.py b/wqflask/wqflask/my_pylmm/pyLMM/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pyLMM/__init__.py diff --git a/wqflask/wqflask/my_pylmm/pyLMM/chunks.py b/wqflask/wqflask/my_pylmm/pyLMM/chunks.py new file mode 100644 index 00000000..abeffee7 --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pyLMM/chunks.py @@ -0,0 +1,96 @@ +from __future__ import absolute_import, print_function, division + +import math +import time + + +def divide_into_chunks(the_list, number_chunks): + """Divides a list into approximately number_chunks smaller lists + + >>> divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 3) + [[1, 2, 7], [3, 22, 8], [5, 22, 333]] + >>> divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 4) + [[1, 2, 7], [3, 22, 8], [5, 22, 333]] + >>> divide_into_chunks([1, 2, 7, 3, 22, 8, 5, 22, 333], 5) + [[1, 2], [7, 3], [22, 8], [5, 22], [333]] + >>> + + """ + length = len(the_list) + + if length == 0: + return [[]] + + if length <= number_chunks: + number_chunks = length + + chunksize = int(math.ceil(length / number_chunks)) + + chunks = [] + for counter in range(0, length, chunksize): + chunks.append(the_list[counter:counter+chunksize]) + + return chunks + +def _confirm_chunk(original, result): + all_chunked = [] + for chunk in result: + all_chunked.extend(chunk) + print("length of all chunked:", len(all_chunked)) + assert original == all_chunked, "You didn't chunk right" + + +def _chunk_test(divide_func): + import random + random.seed(7) + + number_exact = 0 + total_amount_off = 0 + + for test in range(1, 1001): + print("\n\ntest:", test) + number_chunks = random.randint(1, 20) + number_elements = random.randint(0, 100) + the_list = list(range(1, number_elements)) + result = divide_func(the_list, number_chunks) + + print("Dividing list of length {} into approximately {} chunks - got {} chunks".format( + len(the_list), number_chunks, len(result))) + print("result:", result) + + _confirm_chunk(the_list, result) + + amount_off = abs(number_chunks - len(result)) + if amount_off == 0: + number_exact += 1 + else: + total_amount_off += amount_off + + + print("\n{} exact out of {} [Total amount off: {}]".format(number_exact, + test, + total_amount_off)) + assert number_exact == 558 + assert total_amount_off == 1580 + return number_exact, total_amount_off + + +def _main(): + info = dict() + #funcs = (("sam", sam_divide_into_chunks), ("zach", zach_divide_into_chunks)) + funcs = (("only one", divide_into_chunks),) + for name, func in funcs: + start = time.time() + number_exact, total_amount_off = _chunk_test(func) + took = time.time() - start + info[name] = dict(number_exact=number_exact, + total_amount_off=total_amount_off, + took=took) + + print("info is:", info) + +if __name__ == '__main__': + _main() + print("\nConfirming doctests...") + import doctest + doctest.testmod()
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/pyLMM/input.py b/wqflask/wqflask/my_pylmm/pyLMM/input.py new file mode 100644 index 00000000..dfe28a4e --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pyLMM/input.py @@ -0,0 +1,263 @@ +# pylmm is a python-based linear mixed-model solver with applications to GWAS + +# Copyright (C) 2013 Nicholas A. Furlotte (nick.furlotte@gmail.com) + +#The program is free for academic use. Please contact Nick Furlotte +#<nick.furlotte@gmail.com> if you are interested in using the software for +#commercial purposes. + +#The software must not be modified and distributed without prior +#permission of the author. + +#THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +#"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +#LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +#A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR +#CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, +#EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +#PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR +#PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF +#LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING +#NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +#SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +import os +import sys +import numpy as np +import struct +import pdb + +class plink: + def __init__(self,fbase,kFile=None,phenoFile=None,type='b',normGenotype=True,readKFile=False): + self.fbase = fbase + self.type = type + self.indivs = self.getIndivs(self.fbase,type) + self.kFile = kFile + self.phenos = None + self.normGenotype = normGenotype + self.phenoFile = phenoFile + # Originally I was using the fastLMM style that has indiv IDs embedded. + # NOW I want to use this module to just read SNPs so I'm allowing + # the programmer to turn off the kinship reading. + self.readKFile = readKFile + + if self.kFile: + self.K = self.readKinship(self.kFile) + elif os.path.isfile("%s.kin" % fbase): + self.kFile = "%s.kin" %fbase + if self.readKFile: + self.K = self.readKinship(self.kFile) + else: + self.kFile = None + self.K = None + + self.getPhenos(self.phenoFile) + + self.fhandle = None + self.snpFileHandle = None + + def __del__(self): + if self.fhandle: self.fhandle.close() + if self.snpFileHandle: self.snpFileHandle.close() + + def getSNPIterator(self): + if not self.type == 'b': + sys.stderr.write("Have only implemented this for binary plink files (bed)\n") + return + + # get the number of snps + file = self.fbase + '.bim' + i = 0 + f = open(file,'r') + for line in f: i += 1 + f.close() + self.numSNPs = i + self.have_read = 0 + self.snpFileHandle = open(file,'r') + + self.BytestoRead = self.N / 4 + (self.N % 4 and 1 or 0) + self._formatStr = 'c'*self.BytestoRead + + file = self.fbase + '.bed' + self.fhandle = open(file,'rb') + + magicNumber = self.fhandle.read(2) + order = self.fhandle.read(1) + if not order == '\x01': + sys.stderr.write("This is not in SNP major order - you did not handle this case\n") + raise StopIteration + + return self + + def __iter__(self): + return self.getSNPIterator() + + def next(self): + if self.have_read == self.numSNPs: + raise StopIteration + X = self.fhandle.read(self.BytestoRead) + XX = [bin(ord(x)) for x in struct.unpack(self._formatStr,X)] + self.have_read += 1 + return self.formatBinaryGenotypes(XX,self.normGenotype),self.snpFileHandle.readline().strip().split()[1] + + def formatBinaryGenotypes(self,X,norm=True): + D = { \ + '00': 0.0, \ + '10': 0.5, \ + '11': 1.0, \ + '01': np.nan \ + } + + D_tped = { \ + '00': '1 1', \ + '10': '1 2', \ + '11': '2 2', \ + '01': '0 0' \ + } + + #D = D_tped + + G = [] + for x in X: + if not len(x) == 10: + xx = x[2:] + x = '0b' + '0'*(8 - len(xx)) + xx + a,b,c,d = (x[8:],x[6:8],x[4:6],x[2:4]) + L = [D[y] for y in [a,b,c,d]] + G += L + # only take the leading values because whatever is left should be null + G = G[:self.N] + G = np.array(G) + if norm: + G = self.normalizeGenotype(G) + return G + + def normalizeGenotype(self,G): + x = True - np.isnan(G) + m = G[x].mean() + s = np.sqrt(G[x].var()) + G[np.isnan(G)] = m + if s == 0: G = G - m + else: G = (G - m) / s + + return G + + def getPhenos(self,phenoFile=None): + if not phenoFile: + self.phenoFile = phenoFile = self.fbase+".phenos" + if not os.path.isfile(phenoFile): + sys.stderr.write("Could not find phenotype file: %s\n" % (phenoFile)) + return + f = open(phenoFile,'r') + keys = [] + P = [] + for line in f: + v = line.strip().split() + keys.append((v[0],v[1])) + P.append([(x == 'NA' or x == '-9') and np.nan or float(x) for x in v[2:]]) + f.close() + P = np.array(P) + + # reorder to match self.indivs + D = {} + L = [] + for i in range(len(keys)): + D[keys[i]] = i + for i in range(len(self.indivs)): + if not D.has_key(self.indivs[i]): + continue + L.append(D[self.indivs[i]]) + P = P[L,:] + + self.phenos = P + return P + + def getIndivs(self,base,type='b'): + if type == 't': + famFile = "%s.tfam" % base + else: + famFile = "%s.fam" % base + keys = [] + i = 0 + f = open(famFile,'r') + for line in f: + v = line.strip().split() + famId = v[0] + indivId = v[1] + k = (famId.strip(),indivId.strip()) + keys.append(k) + i += 1 + f.close() + + self.N = len(keys) + sys.stderr.write("Read %d individuals from %s\n" % (self.N, famFile)) + + return keys + + def readKinship(self,kFile): + # Assume the fastLMM style + # This will read in the kinship matrix and then reorder it + # according to self.indivs - additionally throwing out individuals + # that are not in both sets + if self.indivs == None or len(self.indivs) == 0: + sys.stderr.write("Did not read any individuals so can't load kinship\n") + return + + sys.stderr.write("Reading kinship matrix from %s\n" % (kFile) ) + + f = open(kFile,'r') + # read indivs + v = f.readline().strip().split("\t")[1:] + keys = [tuple(y.split()) for y in v] + D = {} + for i in range(len(keys)): D[keys[i]] = i + + # read matrix + K = [] + for line in f: + K.append([float(x) for x in line.strip().split("\t")[1:]]) + f.close() + K = np.array(K) + + # reorder to match self.indivs + L = [] + KK = [] + X = [] + for i in range(len(self.indivs)): + if not D.has_key(self.indivs[i]): + X.append(self.indivs[i]) + else: + KK.append(self.indivs[i]) + L.append(D[self.indivs[i]]) + K = K[L,:][:,L] + self.indivs = KK + self.indivs_removed = X + if len(self.indivs_removed): + sys.stderr.write("Removed %d individuals that did not appear in Kinship\n" % (len(self.indivs_removed))) + return K + + def getCovariates(self,covFile=None): + if not os.path.isfile(covFile): + sys.stderr.write("Could not find covariate file: %s\n" % (phenoFile)) + return + f = open(covFile,'r') + keys = [] + P = [] + for line in f: + v = line.strip().split() + keys.append((v[0],v[1])) + P.append([x == 'NA' and np.nan or float(x) for x in v[2:]]) + f.close() + P = np.array(P) + + # reorder to match self.indivs + D = {} + L = [] + for i in range(len(keys)): + D[keys[i]] = i + for i in range(len(self.indivs)): + if not D.has_key(self.indivs[i]): continue + L.append(D[self.indivs[i]]) + P = P[L,:] + + return P
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py new file mode 100644 index 00000000..5bfc3a01 --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py @@ -0,0 +1,674 @@ +# pylmm is a python-based linear mixed-model solver with applications to GWAS + +# Copyright (C) 2013 Nicholas A. Furlotte (nick.furlotte@gmail.com) +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. + +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + +from __future__ import absolute_import, print_function, division + +import sys +import time +import uuid + +import numpy as np +from scipy import linalg +from scipy import optimize +from scipy import stats +import pdb + +import gzip +import zlib +import datetime +import cPickle as pickle +import simplejson as json + +from pprint import pformat as pf + +from utility.benchmark import Bench +from utility import temp_data + +from wqflask.my_pylmm.pyLMM import chunks + +import redis +Redis = redis.Redis() + +#np.seterr('raise') + +def run_human(pheno_vector, + covariate_matrix, + plink_input_file, + kinship_matrix, + refit=False, + loading_progress=None): + + v = np.isnan(pheno_vector) + keep = True - v + keep = keep.reshape((len(keep),)) + + identifier = str(uuid.uuid4()) + + print("pheno_vector: ", pf(pheno_vector)) + print("kinship_matrix: ", pf(kinship_matrix)) + print("kinship_matrix.shape: ", pf(kinship_matrix.shape)) + + lmm_vars = pickle.dumps(dict( + pheno_vector = pheno_vector, + covariate_matrix = covariate_matrix, + kinship_matrix = kinship_matrix + )) + Redis.hset(identifier, "lmm_vars", lmm_vars) + Redis.expire(identifier, 60*60) + + if v.sum(): + pheno_vector = pheno_vector[keep] + #print("pheno_vector shape is now: ", pf(pheno_vector.shape)) + covariate_matrix = covariate_matrix[keep,:] + #print("kinship_matrix shape is: ", pf(kinship_matrix.shape)) + #print("len(keep) is: ", pf(keep.shape)) + kinship_matrix = kinship_matrix[keep,:][:,keep] + + n = kinship_matrix.shape[0] + #print("n is:", n) + lmm_ob = LMM(pheno_vector, + kinship_matrix, + covariate_matrix) + lmm_ob.fit() + + + # Buffers for pvalues and t-stats + p_values = [] + t_stats = [] + + #print("input_file: ", plink_input_file) + + with Bench("Opening and loading pickle file"): + with gzip.open(plink_input_file, "rb") as input_file: + data = pickle.load(input_file) + + plink_input = data['plink_input'] + + #plink_input.getSNPIterator() + with Bench("Calculating numSNPs"): + total_snps = data['numSNPs'] + + with Bench("snp iterator loop"): + count = 0 + + with Bench("Create list of inputs"): + inputs = list(plink_input) + + print("len(genotypes): ", len(inputs)) + + with Bench("Divide into chunks"): + results = chunks.divide_into_chunks(inputs, 64) + + result_store = [] + + key = "plink_inputs" + + # Todo: Delete below line when done testing + Redis.delete(key) + + timestamp = datetime.datetime.utcnow().isoformat() + + #print("Starting adding loop") + for part, result in enumerate(results): + #data = pickle.dumps(result, pickle.HIGHEST_PROTOCOL) + holder = pickle.dumps(dict( + identifier = identifier, + part = part, + timestamp = timestamp, + result = result + ), pickle.HIGHEST_PROTOCOL) + + #print("Adding:", part) + Redis.rpush(key, zlib.compress(holder)) + #print("End adding loop") + #print("***** Added to {} queue *****".format(key)) + for snp, this_id in plink_input: + #with Bench("part before association"): + if count > 2000: + break + count += 1 + + percent_complete = (float(count) / total_snps) * 100 + #print("percent_complete: ", percent_complete) + loading_progress.store("percent_complete", percent_complete) + + #with Bench("actual association"): + ps, ts = human_association(snp, + n, + keep, + lmm_ob, + pheno_vector, + covariate_matrix, + kinship_matrix, + refit) + + #with Bench("after association"): + p_values.append(ps) + t_stats.append(ts) + + return p_values, t_stats + + +#class HumanAssociation(object): +# def __init__(self): +# + +def human_association(snp, + n, + keep, + lmm_ob, + pheno_vector, + covariate_matrix, + kinship_matrix, + refit): + + x = snp[keep].reshape((n,1)) + #x[[1,50,100,200,3000],:] = np.nan + v = np.isnan(x).reshape((-1,)) + + # Check SNPs for missing values + if v.sum(): + keeps = True - v + xs = x[keeps,:] + # If no variation at this snp or all genotypes missing + if keeps.sum() <= 1 or xs.var() <= 1e-6: + return np.nan, np.nan + #p_values.append(np.nan) + #t_stats.append(np.nan) + #continue + + # Its ok to center the genotype - I used options.normalizeGenotype to + # force the removal of missing genotypes as opposed to replacing them with MAF. + + #if not options.normalizeGenotype: + # xs = (xs - xs.mean()) / np.sqrt(xs.var()) + + filtered_pheno = pheno_vector[keeps] + filtered_covariate_matrix = covariate_matrix[keeps,:] + filtered_kinship_matrix = kinship_matrix[keeps,:][:,keeps] + filtered_lmm_ob = lmm.LMM(filtered_pheno,filtered_kinship_matrix,X0=filtered_covariate_matrix) + if refit: + filtered_lmm_ob.fit(X=xs) + else: + #try: + filtered_lmm_ob.fit() + #except: pdb.set_trace() + ts,ps,beta,betaVar = Ls.association(xs,returnBeta=True) + else: + if x.var() == 0: + return np.nan, np.nan + #p_values.append(np.nan) + #t_stats.append(np.nan) + #continue + if refit: + lmm_ob.fit(X=x) + ts, ps, beta, betaVar = lmm_ob.association(x) + return ps, ts + + +def run(pheno_vector, + genotype_matrix, + restricted_max_likelihood=True, + refit=False, + temp_data=None): + """Takes the phenotype vector and genotype matrix and returns a set of p-values and t-statistics + + restricted_max_likelihood -- whether to use restricted max likelihood; True or False + refit -- whether to refit the variance component for each marker + temp_data -- TempData object that stores the progress for each major step of the + calculations ("calculate_kinship" and "GWAS" take the majority of time) + + """ + + with Bench("Calculate Kinship"): + kinship_matrix = calculate_kinship(genotype_matrix, temp_data) + + with Bench("Create LMM object"): + lmm_ob = LMM(pheno_vector, kinship_matrix) + + with Bench("LMM_ob fitting"): + lmm_ob.fit() + + print("genotype_matrix: ", genotype_matrix.shape) + + with Bench("Doing GWAS"): + t_stats, p_values = GWAS(pheno_vector, + genotype_matrix, + kinship_matrix, + restricted_max_likelihood=True, + refit=False, + temp_data=temp_data) + Bench().report() + return t_stats, p_values + + +def matrixMult(A,B): + + # If there is no fblas then we will revert to np.dot() + try: + linalg.fblas + except AttributeError: + return np.dot(A,B) + + #print("A is:", pf(A.shape)) + #print("B is:", pf(B.shape)) + + # If the matrices are in Fortran order then the computations will be faster + # when using dgemm. Otherwise, the function will copy the matrix and that takes time. + if not A.flags['F_CONTIGUOUS']: + AA = A.T + transA = True + else: + AA = A + transA = False + + if not B.flags['F_CONTIGUOUS']: + BB = B.T + transB = True + else: + BB = B + transB = False + + return linalg.fblas.dgemm(alpha=1.,a=AA,b=BB,trans_a=transA,trans_b=transB) + + +def calculate_kinship(genotype_matrix, temp_data): + """ + genotype_matrix is an n x m matrix encoding SNP minor alleles. + + This function takes a matrix oF SNPs, imputes missing values with the maf, + normalizes the resulting vectors and returns the RRM matrix. + + """ + n = genotype_matrix.shape[0] + m = genotype_matrix.shape[1] + #print("n is:", n) + #print("m is:", m) + keep = [] + for counter in range(m): + #print("type of genotype_matrix[:,counter]:", pf(genotype_matrix[:,counter])) + #Checks if any values in column are not numbers + not_number = np.isnan(genotype_matrix[:,counter]) + + #Gets vector of values for column (no values in vector if not all values in col are numbers) + marker_values = genotype_matrix[True - not_number, counter] + #print("type of marker_values is:", type(marker_values)) + + #Gets mean of values in vector + values_mean = marker_values.mean() + + genotype_matrix[not_number,counter] = values_mean + vr = genotype_matrix[:,counter].var() + if vr == 0: + continue + keep.append(counter) + genotype_matrix[:,counter] = (genotype_matrix[:,counter] - values_mean) / np.sqrt(vr) + + percent_complete = int(round((counter/m)*45)) + temp_data.store("percent_complete", percent_complete) + + genotype_matrix = genotype_matrix[:,keep] + kinship_matrix = np.dot(genotype_matrix,genotype_matrix.T) * 1.0/float(m) + return kinship_matrix + +def GWAS(pheno_vector, + genotype_matrix, + kinship_matrix, + kinship_eigen_vals=None, + kinship_eigen_vectors=None, + covariate_matrix=None, + restricted_max_likelihood=True, + refit=False, + temp_data=None): + """ + Performs a basic GWAS scan using the LMM. This function + uses the LMM module to assess association at each SNP and + does some simple cleanup, such as removing missing individuals + per SNP and re-computing the eigen-decomp + + pheno_vector - n x 1 phenotype vector + genotype_matrix - n x m SNP matrix + kinship_matrix - n x n kinship matrix + kinship_eigen_vals, kinship_eigen_vectors = linalg.eigh(K) - or the eigen vectors and values for K + covariate_matrix - n x q covariate matrix + restricted_max_likelihood - use restricted maximum likelihood + refit - refit the variance component for each SNP + + """ + if kinship_eigen_vals == None: + kinship_eigen_vals = [] + if kinship_eigen_vectors == None: + kinship_eigen_vectors = [] + + n = genotype_matrix.shape[0] + m = genotype_matrix.shape[1] + + if covariate_matrix == None: + covariate_matrix = np.ones((n,1)) + + # Remove missing values in pheno_vector and adjust associated parameters + v = np.isnan(pheno_vector) + if v.sum(): + keep = True - v + pheno_vector = pheno_vector[keep] + genotype_matrix = genotype_matrix[keep,:] + covariate_matrix = covariate_matrix[keep,:] + kinship_matrix = kinship_matrix[keep,:][:,keep] + kinship_eigen_vals = [] + kinship_eigen_vectors = [] + + lmm_ob = LMM(pheno_vector, + kinship_matrix, + kinship_eigen_vals, + kinship_eigen_vectors, + covariate_matrix) + if not refit: + lmm_ob.fit() + + p_values = [] + t_statistics = [] + + n = genotype_matrix.shape[0] + m = genotype_matrix.shape[1] + + for counter in range(m): + x = genotype_matrix[:,counter].reshape((n, 1)) + v = np.isnan(x).reshape((-1,)) + if v.sum(): + keep = True - v + xs = x[keep,:] + if xs.var() == 0: + p_values.append(np.nan) + t_statistics.append(np.nan) + continue + + pheno_vector = pheno_vector[keep] + covariate_matrix = covariate_matrix[keep,:] + kinship_matrix = kinship_matrix[keep,:][:,keep] + lmm_ob_2 = LMM(pheno_vector, + kinship_matrix, + X0=covariate_matrix) + if refit: + lmm_ob_2.fit(X=xs) + else: + lmm_ob_2.fit() + ts, ps, beta, betaVar = lmm_ob_2.association(xs, REML=restricted_max_likelihood) + else: + if x.var() == 0: + p_values.append(np.nan) + t_statistics.append(np.nan) + continue + + if refit: + lmm_ob.fit(X=x) + ts, ps, beta, betaVar = lmm_ob.association(x, REML=restricted_max_likelihood) + + percent_complete = 45 + int(round((counter/m)*55)) + temp_data.store("percent_complete", percent_complete) + + p_values.append(ps) + t_statistics.append(ts) + + return t_statistics, p_values + + +class LMM: + + """ + This is a simple version of EMMA/fastLMM. + The main purpose of this module is to take a phenotype vector (Y), a set of covariates (X) and a kinship matrix (K) + and to optimize this model by finding the maximum-likelihood estimates for the model parameters. + There are three model parameters: heritability (h), covariate coefficients (beta) and the total + phenotypic variance (sigma). + Heritability as defined here is the proportion of the total variance (sigma) that is attributed to + the kinship matrix. + + For simplicity, we assume that everything being input is a numpy array. + If this is not the case, the module may throw an error as conversion from list to numpy array + is not done consistently. + + """ + def __init__(self,Y,K,Kva=[],Kve=[],X0=None,verbose=False): + + """ + The constructor takes a phenotype vector or array of size n. + It takes a kinship matrix of size n x n. Kva and Kve can be computed as Kva,Kve = linalg.eigh(K) and cached. + If they are not provided, the constructor will calculate them. + X0 is an optional covariate matrix of size n x q, where there are q covariates. + When this parameter is not provided, the constructor will set X0 to an n x 1 matrix of all ones to represent a mean effect. + """ + + if X0 == None: X0 = np.ones(len(Y)).reshape(len(Y),1) + self.verbose = verbose + + #x = Y != -9 + x = True - np.isnan(Y) + #pdb.set_trace() + if not x.sum() == len(Y): + if self.verbose: sys.stderr.write("Removing %d missing values from Y\n" % ((True - x).sum())) + Y = Y[x] + K = K[x,:][:,x] + X0 = X0[x,:] + Kva = [] + Kve = [] + self.nonmissing = x + + if len(Kva) == 0 or len(Kve) == 0: + if self.verbose: sys.stderr.write("Obtaining eigendecomposition for %dx%d matrix\n" % (K.shape[0],K.shape[1]) ) + begin = time.time() + Kva,Kve = linalg.eigh(K) + end = time.time() + if self.verbose: sys.stderr.write("Total time: %0.3f\n" % (end - begin)) + + self.K = K + self.Kva = Kva + self.Kve = Kve + #print("self.Kva is: ", pf(self.Kva)) + #print("self.Kve is: ", pf(self.Kve)) + self.Y = Y + self.X0 = X0 + self.N = self.K.shape[0] + + if sum(self.Kva < 1e-6): + if self.verbose: sys.stderr.write("Cleaning %d eigen values\n" % (sum(self.Kva < 0))) + self.Kva[self.Kva < 1e-6] = 1e-6 + + self.transform() + + def transform(self): + + """ + Computes a transformation on the phenotype vector and the covariate matrix. + The transformation is obtained by left multiplying each parameter by the transpose of the + eigenvector matrix of K (the kinship). + """ + + self.Yt = matrixMult(self.Kve.T, self.Y) + self.X0t = matrixMult(self.Kve.T, self.X0) + self.X0t_stack = np.hstack([self.X0t, np.ones((self.N,1))]) + self.q = self.X0t.shape[1] + + def getMLSoln(self,h,X): + + """ + Obtains the maximum-likelihood estimates for the covariate coefficients (beta), + the total variance of the trait (sigma) and also passes intermediates that can + be utilized in other functions. The input parameter h is a value between 0 and 1 and represents + the heritability or the proportion of the total variance attributed to genetics. The X is the + covariate matrix. + """ + + S = 1.0/(h*self.Kva + (1.0 - h)) + Xt = X.T*S + XX = matrixMult(Xt,X) + XX_i = linalg.inv(XX) + beta = matrixMult(matrixMult(XX_i,Xt),self.Yt) + Yt = self.Yt - matrixMult(X,beta) + Q = np.dot(Yt.T*S,Yt) + sigma = Q * 1.0 / (float(self.N) - float(X.shape[1])) + return beta,sigma,Q,XX_i,XX + + def LL_brent(self,h,X=None,REML=False): + #brent will not be bounded by the specified bracket. + # I return a large number if we encounter h < 0 to avoid errors in LL computation during the search. + if h < 0: return 1e6 + return -self.LL(h,X,stack=False,REML=REML)[0] + + def LL(self,h,X=None,stack=True,REML=False): + + """ + Computes the log-likelihood for a given heritability (h). If X==None, then the + default X0t will be used. If X is set and stack=True, then X0t will be matrix concatenated with + the input X. If stack is false, then X is used in place of X0t in the LL calculation. + REML is computed by adding additional terms to the standard LL and can be computed by setting REML=True. + """ + + if X == None: + X = self.X0t + elif stack: + self.X0t_stack[:,(self.q)] = matrixMult(self.Kve.T,X)[:,0] + X = self.X0t_stack + + n = float(self.N) + q = float(X.shape[1]) + beta,sigma,Q,XX_i,XX = self.getMLSoln(h,X) + LL = n*np.log(2*np.pi) + np.log(h*self.Kva + (1.0-h)).sum() + n + n*np.log(1.0/n * Q) + LL = -0.5 * LL + + if REML: + LL_REML_part = q*np.log(2.0*np.pi*sigma) + np.log(linalg.det(matrixMult(X.T,X))) - np.log(linalg.det(XX)) + LL = LL + 0.5*LL_REML_part + + return LL,beta,sigma,XX_i + + def getMax(self,H, X=None,REML=False): + + """ + Helper functions for .fit(...). + This function takes a set of LLs computed over a grid and finds possible regions + containing a maximum. Within these regions, a Brent search is performed to find the + optimum. + + """ + n = len(self.LLs) + HOpt = [] + for i in range(1,n-2): + if self.LLs[i-1] < self.LLs[i] and self.LLs[i] > self.LLs[i+1]: + HOpt.append(optimize.brent(self.LL_brent,args=(X,REML),brack=(H[i-1],H[i+1]))) + if np.isnan(HOpt[-1][0]): + HOpt[-1][0] = [self.LLs[i-1]] + + if len(HOpt) > 1: + if self.verbose: + sys.stderr.write("NOTE: Found multiple optima. Returning first...\n") + return HOpt[0] + elif len(HOpt) == 1: + return HOpt[0] + elif self.LLs[0] > self.LLs[n-1]: + return H[0] + else: + return H[n-1] + + def fit(self,X=None,ngrids=100,REML=True): + + """ + Finds the maximum-likelihood solution for the heritability (h) given the current parameters. + X can be passed and will transformed and concatenated to X0t. Otherwise, X0t is used as + the covariate matrix. + + This function calculates the LLs over a grid and then uses .getMax(...) to find the optimum. + Given this optimum, the function computes the LL and associated ML solutions. + """ + + if X == None: + X = self.X0t + else: + #X = np.hstack([self.X0t,matrixMult(self.Kve.T, X)]) + self.X0t_stack[:,(self.q)] = matrixMult(self.Kve.T,X)[:,0] + X = self.X0t_stack + + H = np.array(range(ngrids)) / float(ngrids) + L = np.array([self.LL(h,X,stack=False,REML=REML)[0] for h in H]) + self.LLs = L + + hmax = self.getMax(H,X,REML) + L,beta,sigma,betaSTDERR = self.LL(hmax,X,stack=False,REML=REML) + + self.H = H + self.optH = hmax + self.optLL = L + self.optBeta = beta + self.optSigma = sigma + + return hmax,beta,sigma,L + + def association(self,X, h = None, stack=True,REML=True, returnBeta=True): + + """ + Calculates association statitics for the SNPs encoded in the vector X of size n. + If h == None, the optimal h stored in optH is used. + + """ + if stack: + #X = np.hstack([self.X0t,matrixMult(self.Kve.T, X)]) + self.X0t_stack[:,(self.q)] = matrixMult(self.Kve.T,X)[:,0] + X = self.X0t_stack + + if h == None: + h = self.optH + + L,beta,sigma,betaVAR = self.LL(h,X,stack=False,REML=REML) + q = len(beta) + ts,ps = self.tstat(beta[q-1],betaVAR[q-1,q-1],sigma,q) + + if returnBeta: + return ts,ps,beta[q-1].sum(),betaVAR[q-1,q-1].sum()*sigma + return ts,ps + + def tstat(self,beta,var,sigma,q): + + """ + Calculates a t-statistic and associated p-value given the estimate of beta and its standard error. + This is actually an F-test, but when only one hypothesis is being performed, it reduces to a t-test. + """ + + ts = beta / np.sqrt(var * sigma) + ps = 2.0*(1.0 - stats.t.cdf(np.abs(ts), self.N-q)) + if not len(ts) == 1 or not len(ps) == 1: raise Exception("Something bad happened :(") + return ts.sum(),ps.sum() + + def plotFit(self,color='b-',title=''): + + """ + Simple function to visualize the likelihood space. It takes the LLs + calcualted over a grid and normalizes them by subtracting off the mean and exponentiating. + The resulting "probabilities" are normalized to one and plotted against heritability. + This can be seen as an approximation to the posterior distribuiton of heritability. + + For diagnostic purposes this lets you see if there is one distinct maximum or multiple + and what the variance of the parameter looks like. + """ + import matplotlib.pyplot as pl + + mx = self.LLs.max() + p = np.exp(self.LLs - mx) + p = p/p.sum() + + pl.plot(self.H,p,color) + pl.xlabel("Heritability") + pl.ylabel("Probability of data") + pl.title(title) diff --git a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py new file mode 100644 index 00000000..e47c18e1 --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py @@ -0,0 +1,127 @@ +from __future__ import absolute_import, print_function, division + +import sys +sys.path.append("../../..") + +print("sys.path: ", sys.path) + +import numpy as np + +import zlib +import cPickle as pickle +import redis +Redis = redis.Redis() + +import lmm + +class ProcessLmmChunk(object): + + def __init__(self): + self.get_snp_data() + self.get_lmm_vars() + + keep = self.trim_matrices() + + self.do_association(keep) + + print("p_values is: ", self.p_values) + + def get_snp_data(self): + plink_pickled = zlib.decompress(Redis.lpop("plink_inputs")) + plink_data = pickle.loads(plink_pickled) + + self.snps = np.array(plink_data['result']) + self.identifier = plink_data['identifier'] + + def get_lmm_vars(self): + lmm_vars_pickled = Redis.hget(self.identifier, "lmm_vars") + lmm_vars = pickle.loads(lmm_vars_pickled) + + self.pheno_vector = np.array(lmm_vars['pheno_vector']) + self.covariate_matrix = np.array(lmm_vars['covariate_matrix']) + self.kinship_matrix = np.array(lmm_vars['kinship_matrix']) + + def trim_matrices(self): + v = np.isnan(self.pheno_vector) + keep = True - v + keep = keep.reshape((len(keep),)) + + if v.sum(): + self.pheno_vector = self.pheno_vector[keep] + self.covariate_matrix = self.covariate_matrix[keep,:] + self.kinship_matrix = self.kinship_matrix[keep,:][:,keep] + + return keep + + def do_association(self, keep): + n = self.kinship_matrix.shape[0] + lmm_ob = lmm.LMM(self.pheno_vector, + self.kinship_matrix, + self.covariate_matrix) + lmm_ob.fit() + + self.p_values = [] + + for snp in self.snps: + snp = snp[0] + p_value, t_stat = lmm.human_association(snp, + n, + keep, + lmm_ob, + self.pheno_vector, + self.covariate_matrix, + self.kinship_matrix, + False) + + self.p_values.append(p_value) + + +#plink_pickled = zlib.decompress(Redis.lpop("plink_inputs")) +# +#plink_data = pickle.loads(plink_pickled) +#result = np.array(plink_data['result']) +#print("snp size is: ", result.shape) +#identifier = plink_data['identifier'] +# +#lmm_vars_pickled = Redis.hget(identifier, "lmm_vars") +#lmm_vars = pickle.loads(lmm_vars_pickled) +# +#pheno_vector = np.array(lmm_vars['pheno_vector']) +#covariate_matrix = np.array(lmm_vars['covariate_matrix']) +#kinship_matrix = np.array(lmm_vars['kinship_matrix']) +# +#v = np.isnan(pheno_vector) +#keep = True - v +#keep = keep.reshape((len(keep),)) +#print("keep is: ", keep) +# +#if v.sum(): +# pheno_vector = pheno_vector[keep] +# covariate_matrix = covariate_matrix[keep,:] +# kinship_matrix = kinship_matrix[keep,:][:,keep] +# +#n = kinship_matrix.shape[0] +#print("n is: ", n) +#lmm_ob = lmm.LMM(pheno_vector, +# kinship_matrix, +# covariate_matrix) +#lmm_ob.fit() +# +#p_values = [] +# +#for snp in result: +# snp = snp[0] +# p_value, t_stat = lmm.human_association(snp, +# n, +# keep, +# lmm_ob, +# pheno_vector, +# covariate_matrix, +# kinship_matrix, +# False) +# +# p_values.append(p_value) + + + + diff --git a/wqflask/wqflask/my_pylmm/pylmmGWAS.py b/wqflask/wqflask/my_pylmm/pylmmGWAS.py new file mode 100644 index 00000000..54a230de --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pylmmGWAS.py @@ -0,0 +1,238 @@ +#!/usr/bin/python + +# pylmm is a python-based linear mixed-model solver with applications to GWAS + +# Copyright (C) 2013 Nicholas A. Furlotte (nick.furlotte@gmail.com) +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. + +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + +import pdb +import time + +def printOutHead(): + out.write("\t".join(["SNP_ID","BETA","BETA_SD","F_STAT","P_VALUE"]) + "\n") +def outputResult(id,beta,betaSD,ts,ps): + out.write("\t".join([str(x) for x in [id,beta,betaSD,ts,ps]]) + "\n") + +from optparse import OptionParser,OptionGroup +usage = """usage: %prog [options] --kfile kinshipFile --[t | b | p]file plinkFileBase outfileBase + +This program provides basic genome-wide association (GWAS) functionality. You provide a phenotype and genotype file as well as a pre-computed (use pylmmKinship.py) kinship matrix and the program outputs a result file with information about each SNP, including the association p-value. +The input file are all standard plink formatted with the first two columns specifiying the individual and family ID. For the phenotype file, we accept either NA or -9 to denote missing values. + +Basic usage: + + python pylmmGWAS.py -v --bfile plinkFile --kfile preComputedKinship.kin --phenofile plinkFormattedPhenotypeFile resultFile + +NOTE: The current running version only supports binary PED files (PLINK). It is simple to convert between ped or tped and bed using PLINK. Sorry for the inconvinience. + + """ +parser = OptionParser(usage=usage) + +basicGroup = OptionGroup(parser, "Basic Options") +advancedGroup = OptionGroup(parser, "Advanced Options") + +basicGroup.add_option("--pfile", dest="pfile", + help="The base for a PLINK ped file") +basicGroup.add_option("--tfile", dest="tfile", + help="The base for a PLINK tped file") +basicGroup.add_option("--bfile", dest="bfile", + help="The base for a PLINK binary bed file") +basicGroup.add_option("--phenofile", dest="phenoFile", default=None, + help="Without this argument the program will look for a file with .pheno that has the plinkFileBase root. If you want to specify an alternative phenotype file, then use this argument. The order does not matter for this file. ") +basicGroup.add_option("--kfile", dest="kfile", + help="The location of a kinship file. This is an nxn plain text file and can be computed with the pylmmKinship program.") +basicGroup.add_option("--covfile", dest="covfile", + help="The location of a covariate file file. This is a plink formatted covariate file.") +basicGroup.add_option("-p", type="int", dest="pheno", help="The phenotype index to be used in association.", default=0) + +advancedGroup.add_option("--removeMissingGenotypes", + action="store_false", dest="normalizeGenotype", default=True, + help="By default the program replaces missing genotypes with the minor allele frequency. This option overrides that behavior making the program remove missing individuals. NOTE: This can increase running time due to the need to recompute the eigendecomposition for each SNP with missing values.") +advancedGroup.add_option("--refit", + action="store_true", dest="refit", default=False, + help="Refit the variance components at each SNP (default is to lock in the variance components under the null).") + +advancedGroup.add_option("--REML", + action="store_true", dest="REML", default=False, + help="Use restricted maximum-likelihood (REML) (default is maximum-likelihood).") +#advancedGroup.add_option("-e", "--efile", dest="saveEig", help="Save eigendecomposition to this file.") +advancedGroup.add_option("--eigen", dest="eigenfile", + help="The location of the precomputed eigendecomposition for the kinship file") +advancedGroup.add_option("--noMean", dest="noMean", default=False,action="store_true", + help="This option only applies when --cofile is used. When covfile is provided, the program will automatically add a global mean covariate to the model unless this option is specified.") + +advancedGroup.add_option("-v", "--verbose", + action="store_true", dest="verbose", default=False, + help="Print extra info") + +parser.add_option_group(basicGroup) +parser.add_option_group(advancedGroup) + +(options, args) = parser.parse_args() + +import sys +import os +import numpy as np +from scipy import linalg +from pylmm.lmm import LMM +from pylmm import input + +if len(args) != 1: + parser.error("Incorrect number of arguments") +outFile = args[0] + +if not options.pfile and not options.tfile and not options.bfile: + parser.error("You must provide at least one PLINK input file base") +if not options.kfile: + parser.error("Please provide a pre-computed kinship file") + +# READING PLINK input +if options.verbose: + sys.stderr.write("Reading PLINK input...\n") +if options.bfile: + IN = input.plink(options.bfile,type='b', phenoFile=options.phenoFile,normGenotype=options.normalizeGenotype) +elif options.tfile: + IN = input.plink(options.tfile,type='t', phenoFile=options.phenoFile,normGenotype=options.normalizeGenotype) +elif options.pfile: + IN = input.plink(options.pfile,type='p', phenoFile=options.phenoFile,normGenotype=options.normalizeGenotype) +else: + parser.error("You must provide at least one PLINK input file base") + +if not os.path.isfile(options.phenoFile or IN.fbase + '.phenos'): + parser.error("No .pheno file exist for %s" % (options.phenoFile or IN.fbase + '.phenos')) + +# READING Covariate File +if options.covfile: + if options.verbose: + sys.stderr.write("Reading covariate file...\n") + # Read the covariate file -- write this into input.plink + P = IN.getCovariates(options.covfile) + + if options.noMean: + X0 = P + else: + X0 = np.hstack([np.ones((IN.phenos.shape[0],1)),P]) + + if np.isnan(X0).sum(): + parser.error("The covariate file %s contains missing values. At this time we are not dealing with this case. Either remove those individuals with missing values or replace them in some way.") +else: + X0 = np.ones((IN.phenos.shape[0],1)) + +# READING Kinship - major bottleneck for large datasets +if options.verbose: + sys.stderr.write("Reading kinship...\n") +begin = time.time() +# This method seems to be the fastest and works if you already know the size of the matrix +if options.kfile[-3:] == '.gz': + import gzip + f = gzip.open(options.kfile,'r') + F = f.read() # might exhaust mem if the file is huge + K = np.fromstring(F,sep=' ') # Assume that space separated + f.close() +else: + K = np.fromfile(open(options.kfile,'r'),sep=" ") +K.resize((len(IN.indivs),len(IN.indivs))) +end = time.time() +# Other slower ways +#K = np.loadtxt(options.kfile) +#K = np.genfromtxt(options.kfile) +if options.verbose: + sys.stderr.write("Read the %d x %d kinship matrix in %0.3fs \n" % (K.shape[0],K.shape[1],end-begin)) + + +# PROCESS the phenotype data -- Remove missing phenotype values +# Keep will now index into the "full" data to select what we keep (either everything or a subset of non missing data +Y = IN.phenos[:,options.pheno] +v = np.isnan(Y) +keep = True - v +if v.sum(): + if options.verbose: + sys.stderr.write("Cleaning the phenotype vector by removing %d individuals...\n" % (v.sum())) + Y = Y[keep] + X0 = X0[keep,:] + K = K[keep,:][:,keep] + Kva = [] + Kve = [] + +# Only load the decomposition if we did not remove individuals. +# Otherwise it would not be correct and we would have to compute it again. +if not v.sum() and options.eigenfile: + if options.verbose: sys.stderr.write("Loading pre-computed eigendecomposition...\n") + Kva = np.load(options.eigenfile + ".Kva") + Kve = np.load(options.eigenfile + ".Kve") +else: + Kva = [] + Kve = [] + +# CREATE LMM object for association +n = K.shape[0] +L = LMM(Y,K,Kva,Kve,X0,verbose=options.verbose) +# Fit the null model -- if refit is true we will refit for each SNP, so no reason to run here +if not options.refit: + if options.verbose: sys.stderr.write("Computing fit for null model\n") + L.fit() + if options.verbose: sys.stderr.write("\t heritability=%0.3f, sigma=%0.3f\n" % (L.optH,L.optSigma)) + +# Buffers for pvalues and t-stats +PS = [] +TS = [] +count = 0 +out = open(outFile,'w') +printOutHead() + +for snp,id in IN: + count += 1 + if options.verbose and count % 1000 == 0: + sys.stderr.write("At SNP %d\n" % count) + + x = snp[keep].reshape((n,1)) + #x[[1,50,100,200,3000],:] = np.nan + v = np.isnan(x).reshape((-1,)) + # Check SNPs for missing values + if v.sum(): + keeps = True - v + xs = x[keeps,:] + if keeps.sum() <= 1 or xs.var() <= 1e-6: + PS.append(np.nan) + TS.append(np.nan) + outputResult(id,np.nan,np.nan,np.nan,np.nan) + continue + + # Its ok to center the genotype - I used options.normalizeGenotype to + # force the removal of missing genotypes as opposed to replacing them with MAF. + if not options.normalizeGenotype: xs = (xs - xs.mean()) / np.sqrt(xs.var()) + Ys = Y[keeps] + X0s = X0[keeps,:] + Ks = K[keeps,:][:,keeps] + Ls = LMM(Ys,Ks,X0=X0s,verbose=options.verbose) + if options.refit: Ls.fit(X=xs,REML=options.REML) + else: + #try: + Ls.fit(REML=options.REML) + #except: pdb.set_trace() + ts,ps,beta,betaVar = Ls.association(xs,REML=options.REML,returnBeta=True) + else: + if x.var() == 0: + PS.append(np.nan) + TS.append(np.nan) + outputResult(id,np.nan,np.nan,np.nan,np.nan) + continue + + if options.refit: L.fit(X=x,REML=options.REML) + ts,ps,beta,betaVar = L.association(x,REML=options.REML,returnBeta=True) + + outputResult(id,beta,np.sqrt(betaVar).sum(),ts,ps) + PS.append(ps) + TS.append(ts) diff --git a/wqflask/wqflask/my_pylmm/pylmmKinship.py b/wqflask/wqflask/my_pylmm/pylmmKinship.py new file mode 100644 index 00000000..cfba2936 --- /dev/null +++ b/wqflask/wqflask/my_pylmm/pylmmKinship.py @@ -0,0 +1,119 @@ +#!/usr/bin/python + +# pylmm is a python-based linear mixed-model solver with applications to GWAS + +# Copyright (C) 2013 Nicholas A. Furlotte (nick.furlotte@gmail.com) + +#The program is free for academic use. Please contact Nick Furlotte +#<nick.furlotte@gmail.com> if you are interested in using the software for +#commercial purposes. + +#The software must not be modified and distributed without prior +#permission of the author. + +#THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +#"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +#LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +#A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR +#CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, +#EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +#PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR +#PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF +#LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING +#NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +#SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +from optparse import OptionParser,OptionGroup +usage = """usage: %prog [options] --[t | b | p]file plinkFileBase outfile + +NOTE: The current running version only supports binary PED files (PLINK). It is simple to convert between ped or tped and bed using PLINK. Sorry for the inconvinience. +""" + +parser = OptionParser(usage=usage) + +basicGroup = OptionGroup(parser, "Basic Options") +#advancedGroup = OptionGroup(parser, "Advanced Options") + +basicGroup.add_option("--pfile", dest="pfile", + help="The base for a PLINK ped file") +basicGroup.add_option("--tfile", dest="tfile", + help="The base for a PLINK tped file") +basicGroup.add_option("--bfile", dest="bfile", + help="The base for a PLINK binary ped file") + +basicGroup.add_option("-e", "--efile", dest="saveEig", help="Save eigendecomposition to this file.") +basicGroup.add_option("-n", default=1000,dest="computeSize", type="int", help="The maximum number of SNPs to read into memory at once (default 1000). This is important when there is a large number of SNPs, because memory could be an issue.") + +basicGroup.add_option("-v", "--verbose", + action="store_true", dest="verbose", default=False, + help="Print extra info") + +parser.add_option_group(basicGroup) +#parser.add_option_group(advancedGroup) + +(options, args) = parser.parse_args() +if len(args) != 1: parser.error("Incorrect number of arguments") +outFile = args[0] + +import sys +import os +import numpy as np +from scipy import linalg +from pyLMM.lmm import calculate_kinship +from pyLMM import input + +if not options.pfile and not options.tfile and not options.bfile: + parser.error("You must provide at least one PLINK input file base") + +if options.verbose: sys.stderr.write("Reading PLINK input...\n") +if options.bfile: IN = input.plink(options.bfile,type='b') +elif options.tfile: IN = input.plink(options.tfile,type='t') +elif options.pfile: IN = input.plink(options.pfile,type='p') +else: parser.error("You must provide at least one PLINK input file base") + +n = len(IN.indivs) +m = options.computeSize +W = np.ones((n,m)) * np.nan + +IN.getSNPIterator() +i = 0 +K = None +while i < IN.numSNPs: + j = 0 + while j < options.computeSize and i < IN.numSNPs: + snp,id = IN.next() + if snp.var() == 0: + i += 1 + continue + W[:,j] = snp + + i += 1 + j += 1 + if j < options.computeSize: W = W[:,range(0,j)] + + if options.verbose: + sys.stderr.write("Processing first %d SNPs\n" % i) + if K == None: + try: + K = linalg.fblas.dgemm(alpha=1.,a=W.T,b=W.T,trans_a=True,trans_b=False) # calculateKinship(W) * j + except AttributeError: + K = np.dot(W,W.T) + else: + try: + K_j = linalg.fblas.dgemm(alpha=1.,a=W.T,b=W.T,trans_a=True,trans_b=False) # calculateKinship(W) * j + except AttributeError: + K_j = np.dot(W,W.T) + K = K + K_j + +K = K / float(IN.numSNPs) +if options.verbose: sys.stderr.write("Saving Kinship file to %s\n" % outFile) +np.savetxt(outFile,K) + +if options.saveEig: + if options.verbose: + sys.stderr.write("Obtaining Eigendecomposition\n") + Kva,Kve = linalg.eigh(K) + if options.verbose: + sys.stderr.write("Saving eigendecomposition to %s.[kva | kve]\n" % outFile) + np.savetxt(outFile+".kva",Kva) + np.savetxt(outFile+".kve",Kve) diff --git a/wqflask/wqflask/pylmm b/wqflask/wqflask/pylmm new file mode 160000 +Subproject cede848b7ce648366c1bdd7bc5df43c633eeb0d diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index d986a2e0..d6432c86 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -1,4 +1,4 @@ -from __future__ import absolute_import, division, print_function +from __future__ import absolute_import, print_function, division from wqflask import app @@ -13,18 +13,22 @@ import time #import pp - Note from Sam: is this used? import math import datetime +import collections from pprint import pformat as pf +import json + +from flask import Flask, g +from MySQLdb import escape_string as escape + # Instead of importing HT we're going to build a class below until we can eliminate it from htmlgen import HTMLgen2 as HT from base import webqtlConfig -from utility.THCell import THCell -from utility.TDCell import TDCell +from utility.benchmark import Bench from base.data_set import create_dataset from base.trait import GeneralTrait -from base.templatePage import templatePage from wqflask import parser from wqflask import do_search from utility import webqtlUtil @@ -34,49 +38,52 @@ from utility import formatting #from base.JinjaPage import JinjaEnv, JinjaPage +#class QuickSearchResult(object): + #def __init__(self, key, result_fields): + # self.key = key + # self.result_fields = result_fields + -class SearchResultPage(templatePage): +class SearchResultPage(object): #maxReturn = 3000 - def __init__(self, fd): - print("initing SearchResultPage") - #import logging_tree - #logging_tree.printout() - self.fd = fd - templatePage.__init__(self, fd) - assert self.openMysql(), "Couldn't open MySQL" - - print("fd is:", pf(fd)) - print("fd.dict is:", pf(fd['dataset'])) - self.dataset = fd['dataset'] - - # change back to self.dataset - #if not self.dataset or self.dataset == 'spacer': - # #Error, No dataset selected + def __init__(self, kw): ########################################### # Names and IDs of group / F2 set ########################################### - + # All Phenotypes is a special case we'll deal with later - if self.dataset == "All Phenotypes": - self.cursor.execute(""" - select PublishFreeze.Name, InbredSet.Name, InbredSet.Id from PublishFreeze, - InbredSet where PublishFreeze.Name not like 'BXD300%' and InbredSet.Id = - PublishFreeze.InbredSetId""") - results = self.cursor.fetchall() - self.dataset = map(lambda x: DataSet(x[0], self.cursor), results) - self.dataset_groups = map(lambda x: x[1], results) - self.dataset_group_ids = map(lambda x: x[2], results) + #if kw['dataset'] == "All Phenotypes": + # self.cursor.execute(""" + # select PublishFreeze.Name, InbredSet.Name, InbredSet.Id from PublishFreeze, + # InbredSet where PublishFreeze.Name not like 'BXD300%' and InbredSet.Id = + # PublishFreeze.InbredSetId""") + # results = self.cursor.fetchall() + # self.dataset = map(lambda x: DataSet(x[0], self.cursor), results) + # self.dataset_groups = map(lambda x: x[1], results) + # self.dataset_group_ids = map(lambda x: x[2], results) + #else: + + self.quick = False + + if 'q' in kw: + self.results = {} + self.quick = True + self.search_terms = kw['q'] + print("self.search_terms is: ", self.search_terms) + self.trait_type = kw['trait_type'] + self.quick_search() else: - print("self.dataset is:", pf(self.dataset)) - # Replaces a string with an object - self.dataset = create_dataset(self.dataset) - print("self.dataset is now:", pf(self.dataset)) - - self.search() - self.gen_search_result() + self.results = [] + print("kw is:", kw) + #self.quick_search = False + self.search_terms = kw['search_terms'] + self.dataset = create_dataset(kw['dataset']) + self.search() + self.gen_search_result() + def gen_search_result(self): @@ -87,7 +94,7 @@ class SearchResultPage(templatePage): """ self.trait_list = [] - species = webqtlDatabaseFunction.retrieve_species(self.dataset.group.name) + species = webqtlDatabaseFunction.retrieve_species(self.dataset.group.name) # result_set represents the results for each search term; a search of # "shh grin2b" would have two sets of results, one for each term @@ -106,12 +113,107 @@ class SearchResultPage(templatePage): self.dataset.get_trait_info(self.trait_list, species) + def quick_search(self): + #search_terms = "" + #for term in self.search_terms.split(): + # search_terms += '+{} '.format(term) + + search_terms = ' '.join('+{}'.format(escape(term)) for term in self.search_terms.split()) + print("search_terms are:", search_terms) + + query = """ SELECT table_name, the_key, result_fields + FROM QuickSearch + WHERE MATCH (terms) + AGAINST ('{}' IN BOOLEAN MODE) """.format(search_terms) + + with Bench("Doing QuickSearch Query: "): + dbresults = g.db.execute(query, no_parameters=True).fetchall() + #print("results: ", pf(results)) + + self.results = collections.defaultdict(list) + + type_dict = {'PublishXRef': 'phenotype', + 'ProbeSetXRef': 'mrna_assay', + 'GenoXRef': 'genotype'} + + self.species_groups = {} + + for dbresult in dbresults: + this_result = {} + this_result['table_name'] = dbresult.table_name + if self.trait_type == type_dict[dbresult.table_name] or self.trait_type == 'all': + this_result['key'] = dbresult.the_key + this_result['result_fields'] = json.loads(dbresult.result_fields) + this_species = this_result['result_fields']['species'] + this_group = this_result['result_fields']['group_name'] + if this_species not in self.species_groups: + self.species_groups[this_species] = {} + if type_dict[dbresult.table_name] not in self.species_groups[this_species]: + self.species_groups[this_species][type_dict[dbresult.table_name]] = [] + if this_group not in self.species_groups[this_species][type_dict[dbresult.table_name]]: + self.species_groups[this_species][type_dict[dbresult.table_name]].append(this_group) + #if type_dict[dbresult.table_name] not in self.species_groups: + # self.species_groups[type_dict[dbresult.table_name]] = {} + #if this_species not in self.species_groups[type_dict[dbresult.table_name]]: + # self.species_groups[type_dict[dbresult.table_name]][this_species] = [] + #if this_group not in self.species_groups[type_dict[dbresult.table_name]][this_species]: + # self.species_groups[type_dict[dbresult.table_name]][this_species].append(this_group) + self.results[type_dict[dbresult.table_name]].append(this_result) + + import redis + Redis = redis.Redis() + + + + #def get_group_species_tree(self): + # self.species_groups = collections.default_dict(list) + # for key in self.results: + # for item in self.results[key]: + # self.species_groups[item['result_fields']['species']].append( + # item['result_fields']['group_name']) + + + #def quick_search(self): + # self.search_terms = parser.parse(self.search_terms) + # + # search_types = ["quick_mrna_assay", "quick_phenotype"] + # + # for search_category in search_types: + # these_results = [] + # search_ob = do_search.DoSearch.get_search(search_category) + # search_class = getattr(do_search, search_ob) + # for a_search in self.search_terms: + # search_term = a_search['search_term'] + # the_search = search_class(search_term) + # these_results.extend(the_search.run()) + # print("in the search results are:", self.results) + # self.results[search_category] = these_results + # + # #for a_search in self.search_terms: + # # search_term = a_search['search_term'] + # # + # # #Do mRNA assay search + # # search_ob = do_search.DoSearch.get_search("quick_mrna_assay") + # # search_class = getattr(do_search, search_ob) + # # the_search = search_class(search_term) + # # + # # self.results.extend(the_search.run()) + # # print("in the search results are:", self.results) + # + # + # #return True + # + # #search_gene + # #search_geno + # #searhch_pheno + # #search_mrn + # #searhc_publish + def search(self): - self.search_terms = parser.parse(self.fd['search_terms']) + self.search_terms = parser.parse(self.search_terms) print("After parsing:", self.search_terms) - self.results = [] for a_search in self.search_terms: print("[kodak] item is:", pf(a_search)) search_term = a_search['search_term'] @@ -131,11 +233,12 @@ class SearchResultPage(templatePage): search_ob = do_search.DoSearch.get_search(search_type) search_class = getattr(do_search, search_ob) + print("search_class is: ", pf(search_class)) the_search = search_class(search_term, search_operator, self.dataset, ) self.results.extend(the_search.run()) - print("in the search results are:", self.results) + #print("in the search results are:", self.results) self.header_fields = the_search.header_fields diff --git a/wqflask/wqflask/show_trait/SampleList.py b/wqflask/wqflask/show_trait/SampleList.py index d98a810a..1130fb60 100644 --- a/wqflask/wqflask/show_trait/SampleList.py +++ b/wqflask/wqflask/show_trait/SampleList.py @@ -4,7 +4,7 @@ from flask import Flask, g from base import webqtlCaseData from utility import webqtlUtil, Plot, Bunch -from base.webqtlTrait import GeneralTrait +from base.trait import GeneralTrait from pprint import pformat as pf diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index 9bd45905..60e42afb 100755 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -3,6 +3,7 @@ from __future__ import absolute_import, print_function, division import string import os import cPickle +import uuid #import pyXLWriter as xl from collections import OrderedDict @@ -14,9 +15,9 @@ from htmlgen import HTMLgen2 as HT from base import webqtlConfig from base import webqtlCaseData from wqflask.show_trait.SampleList import SampleList -from utility import webqtlUtil, Plot, Bunch +from utility import webqtlUtil, Plot, Bunch, helper_functions from base.trait import GeneralTrait -from base.data_set import create_dataset +from base import data_set from dbFunction import webqtlDatabaseFunction from base.templatePage import templatePage from basicStatistics import BasicStatisticsFunctions @@ -38,26 +39,13 @@ class ShowTrait(object): print("in ShowTrait, kw are:", kw) self.trait_id = kw['trait_id'] - self.dataset = create_dataset(kw['dataset']) - - #self.cell_id = None - - - this_trait = GeneralTrait(dataset=self.dataset.name, - name=self.trait_id, - cellid=None) - + helper_functions.get_species_dataset_trait(self, kw) self.dataset.group.read_genotype_file() - if not self.dataset.group.genotype: - self.read_data(include_f1=True) - - # Todo: Add back in the ones we actually need from below, as we discover we need them hddn = OrderedDict() - ## Some fields, like method, are defaulted to None; otherwise in IE the field can't be changed using jquery #hddn = OrderedDict( # FormID = fmID, @@ -98,27 +86,22 @@ class ShowTrait(object): # this_trait.mysqlid) # heritability = self.cursor.fetchone() - #hddn['mappingMethodId'] = webqtlDatabaseFunction.getMappingMethod (cursor=self.cursor, - # groupName=fd.group) - - self.dispTraitInformation(kw, "", hddn, this_trait) #Display trait information + function buttons + self.dispTraitInformation(kw, "", hddn, self.this_trait) #Display trait information + function buttons - #if this_trait == None: - # this_trait = webqtlTrait(data=kw['allTraitData'], dataset=None) + self.build_correlation_tools(self.this_trait) - self.build_correlation_tools(this_trait) - - self.make_sample_lists(this_trait) + self.make_sample_lists(self.this_trait) if self.dataset.group.allsamples: hddn['allsamples'] = string.join(self.dataset.group.allsamples, ' ') hddn['trait_id'] = self.trait_id - hddn['dataset_name'] = self.dataset.name + hddn['dataset'] = self.dataset.name # We'll need access to this_trait and hddn in the Jinja2 Template, so we put it inside self - self.this_trait = this_trait self.hddn = hddn + + self.temp_uuid = uuid.uuid4() self.sample_group_types = OrderedDict() self.sample_group_types['samples_primary'] = self.dataset.group.name + " Only" @@ -128,38 +111,19 @@ class ShowTrait(object): print("sample_lists is:", pf(sample_lists)) js_data = dict(sample_group_types = self.sample_group_types, sample_lists = sample_lists, - attribute_names = self.sample_groups[0].attributes) - print("js_data:", pf(js_data)) + attribute_names = self.sample_groups[0].attributes, + temp_uuid = self.temp_uuid) self.js_data = js_data - #def get_this_trait(self): - # this_trait = GeneralTrait(dataset=self.dataset.name, - # name=self.trait_id, - # cellid=self.cell_id) - # - # ###identification, etc. - # #self.identification = '%s : %s' % (self.dataset.shortname, self.trait_id) - # #this_trait.returnURL = webqtlConfig.CGIDIR + webqtlConfig.SCRIPTFILE + '?FormID=showDatabase&database=%s\ - # # &ProbeSetID=%s&group=%s&parentsf1=on' %(self.dataset, self.trait_id, self.dataset.group.name) - # # - # #if self.cell_id: - # # self.identification = '%s/%s'%(self.identification, self.cell_id) - # # this_trait.returnURL = '%s&CellID=%s' % (this_trait.returnURL, self.cell_id) - # - # this_trait.retrieve_info() - # this_trait.retrieve_sample_data() - # return this_trait - - def read_data(self, include_f1=False): '''read user input data or from trait data and analysis form''' #if incf1 == None: # incf1 = [] - if not self.genotype: - self.dataset.read_genotype_file() + #if not self.genotype: + # self.dataset.read_genotype_file() if not samplelist: if include_f1: samplelist = self.f1list + self.samplelist @@ -322,13 +286,11 @@ class ShowTrait(object): if snpurl: snpBrowserButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % snpurl) snpBrowserButton_img = HT.Image("/images/snp_icon.jpg", name="snpbrowser", alt=" View SNPs and Indels ", title=" View SNPs and Indels ", style="border:none;") - #snpBrowserButton.append(snpBrowserButton_img) snpBrowserText = "SNPs" #XZ: Show GeneWiki for all species geneWikiButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % (os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE) + "?FormID=geneWiki&symbol=%s" % this_trait.symbol)) geneWikiButton_img = HT.Image("/images/genewiki_icon.jpg", name="genewiki", alt=" Write or review comments about this gene ", title=" Write or review comments about this gene ", style="border:none;") - #geneWikiButton.append(geneWikiButton_img) geneWikiText = 'GeneWiki' #XZ: display similar traits in other selected datasets @@ -337,15 +299,9 @@ class ShowTrait(object): similarUrl = "%s?cmd=sch&gene=%s&alias=1&species=%s" % (os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), this_trait.symbol, _Species) similarButton = HT.Href(url="#redirect", onClick="openNewWin('%s')" % similarUrl) similarButton_img = HT.Image("/images/find_icon.jpg", name="similar", alt=" Find similar expression data ", title=" Find similar expression data ", style="border:none;") - #similarButton.append(similarButton_img) similarText = "Find" else: pass - #tbl.append(HT.TR( - #HT.TD('Gene Symbol: ', Class="fwb fs13", valign="top", nowrap="on", width=90), - #HT.TD(width=10, valign="top"), - #HT.TD(HT.Span('%s' % this_trait.symbol, valign="top", Class="fs13 fsI"), valign="top", width=740) - #)) else: tbl.append(HT.TR( HT.TD('Gene Symbol: ', Class="fwb fs13", valign="top", nowrap="on"), @@ -391,11 +347,6 @@ class ShowTrait(object): for seqt in seqs: if int(seqt[1][-1]) %2 == 1: blatsequence += '%3EProbe_'+string.strip(seqt[1])+'%0A'+string.strip(seqt[0])+'%0A' - #-------- - #XZ, 07/16/2009: targetsequence is not used, so I comment out this block - #targetsequence = this_trait.targetseq - #if targetsequence==None: - # targetsequence = "" #XZ: Pay attention to the parameter of version (rn, mm, hg). They need to be changed if necessary. if _Species == "rat": @@ -444,55 +395,6 @@ class ShowTrait(object): #probeButton.append(probeButton_img) probeText = "Probes" - #tSpan = HT.Span(Class="fs13") - - #XZ: deal with blat score and blat specificity. - #if this_trait.probe_set_specificity or this_trait.probe_set_blat_score: - # if this_trait.probe_set_specificity: - # pass - # #tSpan.append(HT.Href(url="/blatInfo.html", target="_blank", title="Values higher than 2 for the specificity are good", text="BLAT specificity", Class="non_bold"),": %.1f" % float(this_trait.probe_set_specificity), " "*3) - # if this_trait.probe_set_blat_score: - # pass - # #tSpan.append("Score: %s" % int(this_trait.probe_set_blat_score), " "*2) - - #onClick="openNewWin('/blatInfo.html')" - - #tbl.append(HT.TR( - # HT.TD('Target Score: ', Class="fwb fs13", valign="top", nowrap="on"), - # HT.TD(width=10, valign="top"), - # HT.TD(tSpan, valign="top") - # )) - - #tSpan = HT.Span(Class="fs13") - #tSpan.append(str(_Species).capitalize(), ", ", fd.group) - # - #tbl.append(HT.TR( - # HT.TD('Species and Group: ', Class="fwb fs13", valign="top", nowrap="on"), - # HT.TD(width=10, valign="top"), - # HT.TD(tSpan, valign="top") - # )) - - #if this_trait.cellid: - # self.cursor.execute(""" - # select ProbeFreeze.Name from ProbeFreeze, ProbeSetFreeze - # where - # ProbeFreeze.Id = ProbeSetFreeze.ProbeFreezeId AND - # ProbeSetFreeze.Id = %d""" % this_trait.dataset.id) - # probeDBName = self.cursor.fetchone()[0] - # tbl.append(HT.TR( - # HT.TD('Database: ', Class="fs13 fwb", valign="top", nowrap="on"), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span('%s' % probeDBName, Class="non_bold"), valign="top") - # )) - #else: - #tbl.append(HT.TR( - # HT.TD('Database: ', Class="fs13 fwb", valign="top", nowrap="on"), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Href(text=this_trait.dataset.fullname, url = webqtlConfig.INFOPAGEHREF % this_trait.dataset.name, - # target='_blank', Class="fs13 fwn non_bold"), valign="top") - # )) - #pass - this_trait.species = _Species # We need this in the template, so we tuck it into this_trait this_trait.database = this_trait.get_database() @@ -527,14 +429,6 @@ class ShowTrait(object): url=webqtlConfig.HOMOLOGENE_ID % this_trait.homologeneid, Class="fs14 fwn", title="Find similar genes in other species") #tSpan.append(HT.Span(hurl, style=idStyle), " "*2) - #tbl.append( - # HT.TR(HT.TD(colspan=3,height=6)), - # HT.TR( - # HT.TD('Resource Links: ', Class="fwb fs13", valign="top", nowrap="on"), - # HT.TD(width=10, valign="top"), - # HT.TD(tSpan, valign="top") - # )) - #XZ: Resource Links: if this_trait.symbol: linkStyle = "background:#dddddd;padding:2" @@ -579,9 +473,7 @@ class ShowTrait(object): # txen), # Class="fs14 fwn"), style=linkStyle) # , " "*2) - #except: - # pass - + #XZ, 7/16/2009: The url for SymAtlas (renamed as BioGPS) has changed. We don't need this any more #tSpan.append(HT.Span(HT.Href(text= 'SymAtlas',target="mainFrame",\ # url="http://symatlas.gnf.org/SymAtlas/bioentry?querytext=%s&query=14&species=%s&type=Expression" \ @@ -650,85 +542,69 @@ class ShowTrait(object): # title="Allen Brain Atlas"), style=linkStyle), " "*2) pass - #tbl.append( - # HT.TR(HT.TD(colspan=3,height=6)), - # HT.TR( - # HT.TD(' '), - # HT.TD(width=10, valign="top"), - # HT.TD(tSpan, valign="top"))) - - #menuTable = HT.TableLite(cellpadding=2, Class="collap", width="620", id="target1") - #menuTable.append(HT.TR(HT.TD(addSelectionButton, align="center"),HT.TD(similarButton, align="center"),HT.TD(verifyButton, align="center"),HT.TD(geneWikiButton, align="center"),HT.TD(snpBrowserButton, align="center"),HT.TD(rnaseqButton, align="center"),HT.TD(probeButton, align="center"),HT.TD(updateButton, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - #menuTable.append(HT.TR(HT.TD(addSelectionText, align="center"),HT.TD(similarText, align="center"),HT.TD(verifyText, align="center"),HT.TD(geneWikiText, align="center"),HT.TD(snpBrowserText, align="center"),HT.TD(rnaseqText, align="center"),HT.TD(probeText, align="center"),HT.TD(updateText, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - - #for zhou mi's cliques, need to be removed #if self.database[:6] == 'BXDMic' and self.ProbeSetID in cliqueID: # Info2Disp.append(HT.Strong('Clique Search: '),HT.Href(text='Search',\ # url ="http://compbio1.utmem.edu/clique_go/results.php?pid=%s&pval_1=0&pval_2=0.001" \ # % self.ProbeSetID,target='_blank',Class="normalsize"),HT.BR()) - #linkTable.append(HT.TR(linkTD)) - #Info2Disp.append(linkTable) - #title1Body.append(tbl, HT.BR(), menuTable) - elif this_trait and this_trait.dataset and this_trait.dataset.type =='Publish': #Check if trait is phenotype - if this_trait.confidential: - pass - #tbl.append(HT.TR( - # HT.TD('Pre-publication Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.pre_publication_description, Class="fs13"), valign="top", width=740) - # )) - if webqtlUtil.hasAccessToConfidentialPhenotypeTrait(privilege=self.privilege, userName=self.userName, authorized_users=this_trait.authorized_users): - #tbl.append(HT.TR( - # HT.TD('Post-publication Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.post_publication_description, Class="fs13"), valign="top", width=740) - # )) - #tbl.append(HT.TR( - # HT.TD('Pre-publication Abbreviation: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.pre_publication_abbreviation, Class="fs13"), valign="top", width=740) - # )) - #tbl.append(HT.TR( - # HT.TD('Post-publication Abbreviation: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.post_publication_abbreviation, Class="fs13"), valign="top", width=740) - # )) - #tbl.append(HT.TR( - # HT.TD('Lab code: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.lab_code, Class="fs13"), valign="top", width=740) - # )) - pass - #tbl.append(HT.TR( - # HT.TD('Owner: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.owner, Class="fs13"), valign="top", width=740) - # )) - else: - pass - #tbl.append(HT.TR( - # HT.TD('Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.post_publication_description, Class="fs13"), valign="top", width=740) - # )) - #tbl.append(HT.TR( - # HT.TD('Authors: ', Class="fs13 fwb", - # valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.authors, Class="fs13"), - # valign="top", width=740) - # )) - #tbl.append(HT.TR( - # HT.TD('Title: ', Class="fs13 fwb", - # valign="top", nowrap="on", width=90), - # HT.TD(width=10, valign="top"), - # HT.TD(HT.Span(this_trait.title, Class="fs13"), - # valign="top", width=740) - # )) + #if this_trait.confidential: + # pass + # #tbl.append(HT.TR( + # # HT.TD('Pre-publication Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.pre_publication_description, Class="fs13"), valign="top", width=740) + # # )) + # if webqtlUtil.hasAccessToConfidentialPhenotypeTrait(privilege=self.privilege, userName=self.userName, authorized_users=this_trait.authorized_users): + # #tbl.append(HT.TR( + # # HT.TD('Post-publication Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.post_publication_description, Class="fs13"), valign="top", width=740) + # # )) + # #tbl.append(HT.TR( + # # HT.TD('Pre-publication Abbreviation: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.pre_publication_abbreviation, Class="fs13"), valign="top", width=740) + # # )) + # #tbl.append(HT.TR( + # # HT.TD('Post-publication Abbreviation: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.post_publication_abbreviation, Class="fs13"), valign="top", width=740) + # # )) + # #tbl.append(HT.TR( + # # HT.TD('Lab code: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.lab_code, Class="fs13"), valign="top", width=740) + # # )) + # pass + # #tbl.append(HT.TR( + # # HT.TD('Owner: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.owner, Class="fs13"), valign="top", width=740) + # # )) + #else: + # pass + # #tbl.append(HT.TR( + # # HT.TD('Phenotype: ', Class="fs13 fwb", valign="top", nowrap="on", width=90), + # # HT.TD(width=10, valign="top"), + # # HT.TD(HT.Span(this_trait.post_publication_description, Class="fs13"), valign="top", width=740) + # # )) + ##tbl.append(HT.TR( + ## HT.TD('Authors: ', Class="fs13 fwb", + ## valign="top", nowrap="on", width=90), + ## HT.TD(width=10, valign="top"), + ## HT.TD(HT.Span(this_trait.authors, Class="fs13"), + ## valign="top", width=740) + ## )) + ##tbl.append(HT.TR( + ## HT.TD('Title: ', Class="fs13 fwb", + ## valign="top", nowrap="on", width=90), + ## HT.TD(width=10, valign="top"), + ## HT.TD(HT.Span(this_trait.title, Class="fs13"), + ## valign="top", width=740) + ## )) if this_trait.journal: journal = this_trait.journal if this_trait.year: @@ -754,12 +630,6 @@ class ShowTrait(object): # )) pass - #menuTable = HT.TableLite(cellpadding=2, Class="collap", width="150", id="target1") - #menuTable.append(HT.TR(HT.TD(addSelectionButton, align="center"),HT.TD(updateButton, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - #menuTable.append(HT.TR(HT.TD(addSelectionText, align="center"),HT.TD(updateText, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - - #title1Body.append(tbl, HT.BR(), menuTable) - elif this_trait and this_trait.dataset and this_trait.dataset.type == 'Geno': #Check if trait is genotype if this_trait.chr and this_trait.mb: @@ -805,41 +675,10 @@ class ShowTrait(object): # valign="top", width=740) # )) - #menuTable = HT.TableLite(cellpadding=2, Class="collap", width="275", id="target1") - #menuTable.append(HT.TR(HT.TD(addSelectionButton, align="center"),HT.TD(verifyButton, align="center"),HT.TD(rnaseqButton, align="center"), HT.TD(updateButton, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - #menuTable.append(HT.TR(HT.TD(addSelectionText, align="center"),HT.TD(verifyText, align="center"),HT.TD(rnaseqText, align="center"), HT.TD(updateText, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - - #title1Body.append(tbl, HT.BR(), menuTable) - - elif (this_trait == None or this_trait.dataset.type == 'Temp'): #if temporary trait (user-submitted trait or PCA trait) - - #TempInfo = HT.Paragraph() - if this_trait != None: - if this_trait.description: - pass - #tbl.append(HT.TR(HT.TD(HT.Strong('Description: '),' %s ' % this_trait.description,HT.BR()), colspan=3, height=15)) - else: - tbl.append(HT.TR(HT.TD(HT.Strong('Description: '),'not available',HT.BR(),HT.BR()), colspan=3, height=15)) - - if (updateText == "Edit"): - menuTable = HT.TableLite(cellpadding=2, Class="collap", width="150", id="target1") - else: - menuTable = HT.TableLite(cellpadding=2, Class="collap", width="80", id="target1") - - #menuTable.append(HT.TR(HT.TD(addSelectionButton, align="right"),HT.TD(updateButton, align="right"), colspan=3, height=50, style="vertical-align:bottom;") ) - #menuTable.append(HT.TR(HT.TD(addSelectionText, align="center"),HT.TD(updateText, align="center"), colspan=3, height=50, style="vertical-align:bottom;")) - # - #title1Body.append(tbl, HT.BR(), menuTable) - - else: - pass - def dispBasicStatistics(self, fd, this_trait): #XZ, June 22, 2011: The definition and usage of primary_samples, other_samples, specialStrains, all_samples are not clear and hard to understand. But since they are only used in this function for draw graph purpose, they will not hurt the business logic outside. As of June 21, 2011, this function seems work fine, so no hurry to clean up. These parameters and code in this function should be cleaned along with fd.f1list, fd.parlist, fd.samplelist later. - #stats_row = HT.TR() - #stats_cell = HT.TD() # This should still be riset here - Sam - Nov. 2012 if fd.genotype.type == "riset": @@ -907,7 +746,6 @@ class ShowTrait(object): for sampleNameOrig in all_samples: sampleName = sampleNameOrig.replace("_2nd_", "") - #try: print("* type of this_trait:", type(this_trait)) print(" name:", this_trait.__class__.__name__) print(" this_trait:", this_trait) @@ -920,28 +758,16 @@ class ShowTrait(object): print(" thisvar:", thisvar) thisValFull = [sampleName, thisval, thisvar] print(" thisValFull:", thisValFull) - #except: - # continue vals1.append(thisValFull) - - #vals1 = [[sampleNameOrig.replace("_2nd_", ""), - # this_trait.data[sampleName].val, - # this_trait.data[sampleName].var] - # for sampleNameOrig in all_samples]] - # - #Using just the group sample for sampleNameOrig in primary_samples: sampleName = sampleNameOrig.replace("_2nd_", "") - #try: thisval = this_trait.data[sampleName].value thisvar = this_trait.data[sampleName].variance thisValFull = [sampleName,thisval,thisvar] - #except: - # continue vals2.append(thisValFull) @@ -949,12 +775,9 @@ class ShowTrait(object): for sampleNameOrig in other_samples: sampleName = sampleNameOrig.replace("_2nd_", "") - #try: thisval = this_trait.data[sampleName].value thisvar = this_trait.data[sampleName].variance thisValFull = [sampleName,thisval,thisvar] - #except: - # continue vals3.append(thisValFull) @@ -967,12 +790,9 @@ class ShowTrait(object): for sampleNameOrig in all_samples: sampleName = sampleNameOrig.replace("_2nd_", "") - #try: thisval = this_trait.data[sampleName].value thisvar = this_trait.data[sampleName].variance thisValFull = [sampleName,thisval,thisvar] - #except: - # continue vals.append(thisValFull) @@ -983,8 +803,6 @@ class ShowTrait(object): if i == 0 and len(vals) < 4: stats_container = HT.Div(id="stats_tabs", style="padding:10px;", Class="ui-tabs") #Needed for tabs; notice the "stats_script_text" below referring to this element stats_container.append(HT.Div(HT.Italic("Fewer than 4 case data were entered. No statistical analysis has been attempted."))) - #stats_script_text = """$(function() { $("#stats_tabs").tabs();});""" - #stats_cell.append(stats_container) break elif (i == 1 and len(primary_samples) < 4): stats_container = HT.Div(id="stats_tabs%s" % i, Class="ui-tabs") @@ -992,20 +810,12 @@ class ShowTrait(object): elif (i == 2 and len(other_samples) < 4): stats_container = HT.Div(id="stats_tabs%s" % i, Class="ui-tabs") stats_container.append(HT.Div(HT.Italic("Fewer than 4 non-" + fd.group + " case data were entered. No statistical analysis has been attempted."))) - #stats_script_text = """$(function() { $("#stats_tabs0").tabs(); $("#stats_tabs1").tabs(); $("#stats_tabs2").tabs();});""" else: continue if len(vals) > 4: stats_tab_list = [HT.Href(text="Basic Table", url="#statstabs-1", Class="stats_tab"),HT.Href(text="Probability Plot", url="#statstabs-5", Class="stats_tab"), HT.Href(text="Bar Graph (by name)", url="#statstabs-3", Class="stats_tab"), HT.Href(text="Bar Graph (by rank)", url="#statstabs-4", Class="stats_tab"), HT.Href(text="Box Plot", url="#statstabs-2", Class="stats_tab")] - #stats_tabs = HT.List(stats_tab_list) - #stats_container.append(stats_tabs) - # - #table_div = HT.Div(id="statstabs-1") - #table_container = HT.Paragraph() - # - #statsTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") if this_trait.dataset: if this_trait.cellid: @@ -1015,12 +825,6 @@ class ShowTrait(object): else: self.stats_data.append(BasicStatisticsFunctions.basicStatsTable(vals=vals)) - #statsTable.append(HT.TR(HT.TD(statsTableCell))) - - #table_container.append(statsTable) - #table_div.append(table_container) - #stats_container.append(table_div) - # #normalplot_div = HT.Div(id="statstabs-5") #normalplot_container = HT.Paragraph() #normalplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") @@ -1038,49 +842,22 @@ class ShowTrait(object): #normally distributed. Different symbols represent different groups.",HT.BR(),HT.BR(), #"More about ", HT.Href(url="http://en.wikipedia.org/wiki/Normal_probability_plot", # target="_blank", text="Normal Probability Plots"), " and more about interpreting these plots from the ", HT.Href(url="/glossary.html#normal_probability", target="_blank", text="glossary")))) - #normalplot_container.append(normalplot) - #normalplot_div.append(normalplot_container) - #stats_container.append(normalplot_div) #boxplot_div = HT.Div(id="statstabs-2") #boxplot_container = HT.Paragraph() #boxplot = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") #boxplot_img, boxplot_link = BasicStatisticsFunctions.plotBoxPlot(vals) #boxplot.append(HT.TR(HT.TD(boxplot_img, HT.P(), boxplot_link, align="left"))) - #boxplot_container.append(boxplot) - #boxplot_div.append(boxplot_container) - #stats_container.append(boxplot_div) - #barName_div = HT.Div(id="statstabs-3") #barName_container = HT.Paragraph() #barName = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") #barName_img = BasicStatisticsFunctions.plotBarGraph(identification=fd.identification, group=fd.group, vals=vals, type="name") - #barName.append(HT.TR(HT.TD(barName_img))) - #barName_container.append(barName) - #barName_div.append(barName_container) - #stats_container.append(barName_div) - # + #barRank_div = HT.Div(id="statstabs-4") #barRank_container = HT.Paragraph() #barRank = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") #barRank_img = BasicStatisticsFunctions.plotBarGraph(identification=fd.identification, group=fd.group, vals=vals, type="rank") - #barRank.append(HT.TR(HT.TD(barRank_img))) - #barRank_container.append(barRank) - #barRank_div.append(barRank_container) - #stats_container.append(barRank_div) - - # stats_cell.append(stats_container) - # - #stats_script.append(stats_script_text) - # - #submitTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%", Class="target2") - #stats_row.append(stats_cell) - - #submitTable.append(stats_row) - #submitTable.append(stats_script) - - #title2Body.append(submitTable) def build_correlation_tools(self, this_trait): @@ -1095,15 +872,6 @@ class ShowTrait(object): this_group = 'BXD' if this_group: - #sample_correlation = HT.Input(type='button',name='sample_corr', value=' Compute ', Class="button sample_corr") - #lit_correlation = HT.Input(type='button',name='lit_corr', value=' Compute ', Class="button lit_corr") - #tissue_correlation = HT.Input(type='button',name='tiss_corr', value=' Compute ', Class="button tiss_corr") - #methodText = HT.Span("Calculate:", Class="ffl fwb fs12") - # - #databaseText = HT.Span("Database:", Class="ffl fwb fs12") - #databaseMenu1 = HT.Select(name='database1') - #databaseMenu2 = HT.Select(name='database2') - #databaseMenu3 = HT.Select(name='database3') dataset_menu = [] print("[tape4] webqtlConfig.PUBLICTHRESH:", webqtlConfig.PUBLICTHRESH) @@ -1128,8 +896,6 @@ class ShowTrait(object): tissues = g.db.execute("SELECT Id, Name FROM Tissue order by Name") for item in tissues.fetchall(): tissue_id, tissue_name = item - #databaseMenuSub = HT.Optgroup(label = '%s ------' % tissue_name) - #dataset_sub_menu = [] data_sets = g.db.execute('''SELECT ProbeSetFreeze.FullName,ProbeSetFreeze.Name FROM ProbeSetFreeze, ProbeFreeze, InbredSet WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = %s and ProbeSetFreeze.public > %s and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name like %s @@ -1139,149 +905,15 @@ class ShowTrait(object): if dataset_sub_menu: dataset_menu.append(dict(tissue=tissue_name, datasets=dataset_sub_menu)) - # ("**heading**", tissue_name)) - #dataset_menu.append(dataset_sub_menu) dataset_menu_selected = None if len(dataset_menu): if this_trait and this_trait.dataset: dataset_menu_selected = this_trait.dataset.name - #criteriaText = HT.Span("Return:", Class="ffl fwb fs12") - - #criteriaMenu1 = HT.Select(name='criteria1', selected='500', onMouseOver="if (NS4 || IE4) activateEl('criterias', event);") - return_results_menu = (100, 200, 500, 1000, 2000, 5000, 10000, 15000, 20000) return_results_menu_selected = 500 - #criteriaMenu1.append(('top 100','100')) - #criteriaMenu1.append(('top 200','200')) - #criteriaMenu1.append(('top 500','500')) - #criteriaMenu1.append(('top 1000','1000')) - #criteriaMenu1.append(('top 2000','2000')) - #criteriaMenu1.append(('top 5000','5000')) - #criteriaMenu1.append(('top 10000','10000')) - #criteriaMenu1.append(('top 15000','15000')) - #criteriaMenu1.append(('top 20000','20000')) - - #self.MDPRow1 = HT.TR(Class='mdp1') - #self.MDPRow2 = HT.TR(Class='mdp2') - #self.MDPRow3 = HT.TR(Class='mdp3') - - # correlationMenus1 = HT.TableLite( - # HT.TR(HT.TD(databaseText), HT.TD(databaseMenu1, colspan="3")), - # HT.TR(HT.TD(criteriaText), HT.TD(criteriaMenu1)), - # self.MDPRow1, cellspacing=0, width="619px", cellpadding=2) - # correlationMenus1.append(HT.Input(name='orderBy', value='2', type='hidden')) # to replace the orderBy menu - # correlationMenus2 = HT.TableLite( - # HT.TR(HT.TD(databaseText), HT.TD(databaseMenu2, colspan="3")), - # HT.TR(HT.TD(criteriaText), HT.TD(criteriaMenu2)), - # self.MDPRow2, cellspacing=0, width="619px", cellpadding=2) - # correlationMenus2.append(HT.Input(name='orderBy', value='2', type='hidden')) - # correlationMenus3 = HT.TableLite( - # HT.TR(HT.TD(databaseText), HT.TD(databaseMenu3, colspan="3")), - # HT.TR(HT.TD(criteriaText), HT.TD(criteriaMenu3)), - # self.MDPRow3, cellspacing=0, width="619px", cellpadding=2) - # correlationMenus3.append(HT.Input(name='orderBy', value='2', type='hidden')) - # - #else: - # correlationMenus = "" - - - #corr_row = HT.TR() - #corr_container = HT.Div(id="corr_tabs", Class="ui-tabs") - # - #if (this_trait.dataset != None and this_trait.dataset.type =='ProbeSet'): - # corr_tab_list = [HT.Href(text='Sample r', url="#corrtabs-1"), - # HT.Href(text='Literature r', url="#corrtabs-2"), - # HT.Href(text='Tissue r', url="#corrtabs-3")] - #else: - # corr_tab_list = [HT.Href(text='Sample r', url="#corrtabs-1")] - # - #corr_tabs = HT.List(corr_tab_list) - #corr_container.append(corr_tabs) - - #if correlationMenus1 or correlationMenus2 or correlationMenus3: - #sample_div = HT.Div(id="corrtabs-1") - #sample_container = HT.Span() - # - #sample_type = HT.Input(type="radio", name="sample_method", value="1", checked="checked") - #sample_type2 = HT.Input(type="radio", name="sample_method", value="2") - # - #sampleTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") - #sampleTD = HT.TD(correlationMenus1, HT.BR(), - # "Pearson", sample_type, " "*3, "Spearman Rank", sample_type2, HT.BR(), HT.BR(), - # sample_correlation, HT.BR(), HT.BR()) - # - #sampleTD.append(HT.Span("The ", - # HT.Href(url="/correlationAnnotation.html#sample_r", target="_blank", - # text="Sample Correlation")," is computed between trait data and", - # " any ",HT.BR()," other traits in the sample database selected above. Use ", - # HT.Href(url="/glossary.html#Correlations", target="_blank", text="Spearman Rank"), - # HT.BR(),"when the sample size is small (<20) or when there are influential \ - # outliers.", HT.BR(),Class="fs12")) - - #sampleTable.append(sampleTD) - - #sample_container.append(sampleTable) - #sample_div.append(sample_container) - #corr_container.append(sample_div) - # - #literature_div = HT.Div(id="corrtabs-2") - #literature_container = HT.Span() - - #literatureTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") - #literatureTD = HT.TD(correlationMenus2,HT.BR(),lit_correlation, HT.BR(), HT.BR()) - #literatureTD.append(HT.Span("The ", HT.Href(url="/correlationAnnotation.html", target="_blank",text="Literature Correlation"), " (Lit r) between this gene and all other genes is computed",HT.BR(), - # "using the ", HT.Href(url="https://grits.eecs.utk.edu/sgo/sgo.html", target="_blank", text="Semantic Gene Organizer"), - # " and human, rat, and mouse data from PubMed. ", HT.BR(),"Values are ranked by Lit r, \ - # but Sample r and Tissue r are also displayed.", HT.BR(), HT.BR(), - # HT.Href(url="/glossary.html#Literature", target="_blank", text="More on using Lit r"), Class="fs12")) - #literatureTable.append(literatureTD) - # - #literature_container.append(literatureTable) - #literature_div.append(literature_container) - # - #if this_trait.dataset != None: - # if (this_trait.dataset.type =='ProbeSet'): - # corr_container.append(literature_div) - # - #tissue_div = HT.Div(id="corrtabs-3") - #tissue_container = HT.Span() - # - #tissue_type = HT.Input(type="radio", name="tissue_method", value="4", checked="checked") - #tissue_type2 = HT.Input(type="radio", name="tissue_method", value="5") - # - #tissueTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%") - #tissueTD = HT.TD(correlationMenus3,HT.BR(), - # "Pearson", tissue_type, " "*3, "Spearman Rank", tissue_type2, HT.BR(), HT.BR(), - # tissue_correlation, HT.BR(), HT.BR()) - #tissueTD.append(HT.Span("The ", HT.Href(url="/webqtl/main.py?FormID=tissueCorrelation", target="_blank", text="Tissue Correlation"), - #" (Tissue r) estimates the similarity of expression of two genes",HT.BR()," or \ - #transcripts across different cells, tissues, or organs (",HT.Href(url="/correlationAnnotation.html#tissue_r", target="_blank", text="glossary"),"). \ - #Tissue correlations",HT.BR()," are generated by analyzing expression in multiple samples usually taken from \ - #single cases.",HT.BR(),HT.Bold("Pearson")," and ",HT.Bold("Spearman Rank")," correlations have been computed for all pairs \ - #of genes",HT.BR()," using data from mouse samples.", - #HT.BR(), Class="fs12")) - #tissueTable.append(tissueTD) - # - #tissue_container.append(tissueTable) - #tissue_div.append(tissue_container) - #if this_trait.dataset != None: - # if (this_trait.dataset.type =='ProbeSet'): - # corr_container.append(tissue_div) - # - #corr_row.append(HT.TD(corr_container)) - # - #corr_script = HT.Script(language="Javascript") - #corr_script_text = """$(function() { $("#corr_tabs").tabs(); });""" - #corr_script.append(corr_script_text) - # - #submitTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%", Class="target4") - #submitTable.append(corr_row) - #submitTable.append(corr_script) - # - #title3Body.append(submitTable) self.corr_tools = dict(dataset_menu = dataset_menu, dataset_menu_selected = dataset_menu_selected, return_results_menu = return_results_menu, @@ -1547,8 +1179,10 @@ class ShowTrait(object): all_samples_ordered = (self.dataset.group.parlist + self.dataset.group.f1list + self.dataset.group.samplelist) - else: + elif self.dataset.group.f1list: all_samples_ordered = self.dataset.group.f1list + self.dataset.group.samplelist + else: + all_samples_ordered = self.dataset.group.samplelist this_trait_samples = set(this_trait.data.keys()) diff --git a/wqflask/wqflask/static/new/css/main.css b/wqflask/wqflask/static/new/css/main.css new file mode 100644 index 00000000..017bbdb8 --- /dev/null +++ b/wqflask/wqflask/static/new/css/main.css @@ -0,0 +1,4 @@ +.security_box { + padding-left: 30px; + padding-right: 30px; +} diff --git a/wqflask/wqflask/static/new/css/marker_regression.css b/wqflask/wqflask/static/new/css/marker_regression.css index 58da563c..054ef93e 100644 --- a/wqflask/wqflask/static/new/css/marker_regression.css +++ b/wqflask/wqflask/static/new/css/marker_regression.css @@ -1,19 +1,31 @@ -.manhattan_plot_segment { - position:relative; - display:inline; - height: 400px; - width: 150px; - float: left; - clear: none; +.manhattan_plot .y_axis path, +.manhattan_plot .y_axis line { + fill: none; + stroke: black; + shape-rendering: crispEdges; +} +.manhattan_plot .y_axis text { + font-family: sans-serif; + font-size: 14px; } -.manhattan_plots { - clear: both; +.manhattan_plot .x_axis path, +.manhattan_plot .x_axis line { + fill: none; + stroke: black; + shape-rendering: crispEdges; +} +.manhattan_plot .x_axis text { + text-anchor: end; + font-family: sans-serif; + font-size: 8px; } -.permutation_histogram { - display: block; - height: 400px; - width: 900px; - clear: both; -}
\ No newline at end of file +rect { + stroke: WhiteSmoke; + fill: lightgrey; +} +/*rect { + stroke: WhiteSmoke; + fill: Azure; +}*/
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index 898ffa02..88bdcb11 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -64,14 +64,14 @@ ], "Leaf": [ [ - "B1LI0809R", - "Barley1 Leaf INOC TTKS (Aug09) RMA" - ], - [ "B1LI0809M5", "Barley1 Leaf INOC TTKS (Aug09) MAS5" ], [ + "B1LI0809R", + "Barley1 Leaf INOC TTKS (Aug09) RMA" + ], + [ "B1MI0809M5", "Barley1 Leaf MOCK TTKS (Aug09) MAS5" ], @@ -114,12 +114,12 @@ "Barley1 Leaf MAS 5.0 SCRI (Dec06)" ], [ - "B30_K_1206_Rn", - "Barley1 Leaf gcRMAn SCRI (Dec06)" - ], - [ "B30_K_1206_R", "Barley1 Leaf gcRMA SCRI (Dec06)" + ], + [ + "B30_K_1206_Rn", + "Barley1 Leaf gcRMAn SCRI (Dec06)" ] ], "Phenotypes": [ @@ -212,14 +212,14 @@ "AD-cases-controls-Myers": { "Brain": [ [ - "GSE15222_F_A_RI_0409", - "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" - ], - [ "GSE15222_F_N_RI_0409", "GSE15222 Human Brain Normal Myers (Apr09) RankInv" ], [ + "GSE15222_F_A_RI_0409", + "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" + ], + [ "GSE15222_F_RI_0409", "GSE15222 Human Brain Myers (Apr09) RankInv" ] @@ -381,43 +381,19 @@ "Amygdala": [ [ "KIN_YSM_AMY_0711", - "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Caudal Ganglionic Eminence": [ - [ - "KIN_YSM_CGE_0711", - "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Cerebellar Cortex": [ [ "KIN_YSM_CBC_0711", - "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Diencephalon": [ - [ - "KIN_YSM_DIE_0711", - "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Dorsal Thalamus": [ - [ - "KIN_YSM_DTH_0711", - "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Dorsolateral Prefrontal Cortex": [ [ "KIN_YSM_DFC_0711", - "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Frontal Cerebral Wall": [ - [ - "KIN_YSM_FC_0711", - "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Genotypes": [ @@ -429,55 +405,31 @@ "Hippocampus": [ [ "KIN_YSM_HIP_0711", - "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Inferior Temporal Cortex": [ [ "KIN_YSM_ITC_0711", - "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Lateral Ganglionic Eminence": [ - [ - "KIN_YSM_LGE_0711", - "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Medial Ganglionic Eminence": [ - [ - "KIN_YSM_MGE_0711", - "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Medial Prefrontal Cortex": [ [ "KIN_YSM_MFC_0711", - "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Mediodorsal Nucleus of Thalamus": [ [ "KIN_YSM_MD_0711", - "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Occipital Cerebral Wall": [ - [ - "KIN_YSM_OC_0711", - "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Orbital Prefrontal Cortex": [ [ "KIN_YSM_OFC_0711", - "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Parietal Cerebral Wall": [ - [ - "KIN_YSM_PC_0711", - "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Phenotypes": [ @@ -489,67 +441,49 @@ "Posterior Inferior Parietal Cortex": [ [ "KIN_YSM_IPC_0711", - "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Posterior Superior Temporal Cortex": [ [ "KIN_YSM_STC_0711", - "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Auditory (A1) Cortex": [ [ "KIN_YSM_A1C_0711", - "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Motor (M1) Cortex": [ [ "KIN_YSM_M1C_0711", - "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Somatosensory (S1) Cortex": [ [ "KIN_YSM_S1C_0711", - "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Visual Cortex": [ [ "KIN_YSM_V1C_0711", - "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Striatum": [ [ "KIN_YSM_STR_0711", - "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Temporal Cerebral Wall": [ - [ - "KIN_YSM_TC_0711", - "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Upper (Rostral) Rhombic Lip": [ - [ - "KIN_YSM_URL_0711", - "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Ventral Forebrain": [ - [ - "KIN_YSM_VF_0711", - "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Ventrolateral Prefrontal Cortex": [ [ "KIN_YSM_VFC_0711", - "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" + "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ] } @@ -558,12 +492,8 @@ "Macaca-fasicularis": { "Amygdala": [ [ - "INIA_MacFas_AMGc_RMA_0110", - "INIA Macaca fasicularis Amygdala control (Jan10) RMA **" - ], - [ - "INIA_MacFas_AMGe_RMA_0110", - "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **" + "INIA_MacFas_AMG_RMA_0110", + "INIA Macaca fasicularis Amygdala (Jan10) RMA **" ] ], "Brain": [ @@ -581,21 +511,13 @@ "Hippocampus": [ [ "INIA_MacFas_Hc_RMA_0110", - "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **" - ], - [ - "INIA_MacFas_He_RMA_0110", - "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **" + "INIA Macaca fasicularis Hippocampus (Jan10) RMA **" ] ], "Nucleus Accumbens": [ [ "INIA_MacFas_Ac_RMA_0110", - "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **" - ], - [ - "INIA_MacFas_Ae_RMA_0110", - "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **" + "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **" ] ], "Phenotypes": [ @@ -607,11 +529,7 @@ "Prefrontal Cortex": [ [ "INIA_MacFas_Pf_RMA_0110", - "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **" - ], - [ - "INIA_MacFas_PfE_RMA_0110", - "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **" + "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **" ] ] } @@ -630,12 +548,12 @@ "NCI Mammary LMT miRNA v2 (Apr09) RMA" ], [ - "MA_M_0704_R", - "NCI Mammary mRNA M430 (July04) RMA" - ], - [ "MA_M_0704_M", "NCI Mammary mRNA M430 (July04) MAS5" + ], + [ + "MA_M_0704_R", + "NCI Mammary mRNA M430 (July04) RMA" ] ], "Phenotypes": [ @@ -658,6 +576,12 @@ "AXBXA Genotypes" ] ], + "Liver": [ + [ + "GSE16780AB_UCLA_ML0911", + "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA" + ] + ], "Phenotypes": [ [ "AXBXAPublish", @@ -674,12 +598,12 @@ ], "Liver": [ [ - "LVF2_M_0704_R", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" - ], - [ "LVF2_M_0704_M", "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" + ], + [ + "LVF2_M_0704_R", + "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" ] ], "Phenotypes": [ @@ -708,12 +632,12 @@ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" ], [ - "BRF2_M_0304_R", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" - ], - [ "BRF2_M_0304_M", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" + ], + [ + "BRF2_M_0304_R", + "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" ] ], "Genotypes": [ @@ -729,6 +653,46 @@ ] ] }, + "B6D2F2-PSU": { + "Genotypes": [ + [ + "B6D2F2-PSUGeno", + "B6D2F2-PSU Genotypes" + ] + ], + "Muscle": [ + [ + "PSU-B6D2F2_0812", + "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA **" + ] + ], + "Phenotypes": [ + [ + "B6D2F2-PSUPublish", + "B6D2F2-PSU Published Phenotypes" + ] + ] + }, + "B6D2RI": { + "Genotypes": [ + [ + "B6D2RIGeno", + "B6D2RI Genotypes" + ] + ], + "Hippocampus": [ + [ + "UTHSC_B6D2RI_H_0912", + "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA **" + ] + ], + "Phenotypes": [ + [ + "B6D2RIPublish", + "B6D2RI Published Phenotypes" + ] + ] + }, "BDF2-1999": { "Genotypes": [ [ @@ -764,44 +728,44 @@ ], "Striatum": [ [ - "SA_M2_0905_R", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" - ], - [ "SA_M2_0905_M", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" ], [ "SA_M2_0905_P", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" + ], + [ + "SA_M2_0905_R", + "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" ] ] }, "BHF2": { "Adipose": [ [ - "UCLA_BHF2_ADIPOSE_MALE", - "UCLA BHF2 Adipose Male mlratio" - ], - [ "UCLA_BHF2_ADIPOSE_FEMALE", "UCLA BHF2 Adipose Female mlratio" ], [ + "UCLA_BHF2_ADIPOSE_MALE", + "UCLA BHF2 Adipose Male mlratio" + ], + [ "UCLA_BHF2_ADIPOSE_0605", "UCLA BHF2 Adipose (June05) mlratio" ] ], "Brain": [ [ - "UCLA_BHF2_BRAIN_MALE", - "UCLA BHF2 Brain Male mlratio" - ], - [ "UCLA_BHF2_BRAIN_FEMALE", "UCLA BHF2 Brain Female mlratio" ], [ + "UCLA_BHF2_BRAIN_MALE", + "UCLA BHF2 Brain Male mlratio" + ], + [ "UCLA_BHF2_BRAIN_0605", "UCLA BHF2 Brain (June05) mlratio" ] @@ -814,28 +778,28 @@ ], "Liver": [ [ - "UCLA_BHF2_LIVER_MALE", - "UCLA BHF2 Liver Male mlratio" - ], - [ "UCLA_BHF2_LIVER_FEMALE", "UCLA BHF2 Liver Female mlratio" ], [ + "UCLA_BHF2_LIVER_MALE", + "UCLA BHF2 Liver Male mlratio" + ], + [ "UCLA_BHF2_LIVER_0605", "UCLA BHF2 Liver (June05) mlratio" ] ], "Muscle": [ [ - "UCLA_BHF2_MUSCLE_MALE", - "UCLA BHF2 Muscle Male mlratio **" - ], - [ "UCLA_BHF2_MUSCLE_FEMALE", "UCLA BHF2 Muscle Female mlratio **" ], [ + "UCLA_BHF2_MUSCLE_MALE", + "UCLA BHF2 Muscle Male mlratio **" + ], + [ "UCLA_BHF2_MUSCLE_0605", "UCLA BHF2 Muscle (June05) mlratio **" ] @@ -850,30 +814,30 @@ "BHHBF2": { "Adipose": [ [ + "UCLA_BHHBF2_ADIPOSE_2005", + "UCLA BHHBF2 Adipose (2005) mlratio" + ], + [ "UCLA_BHHBF2_ADIPOSE_MALE", "UCLA BHHBF2 Adipose Male Only" ], [ "UCLA_BHHBF2_ADIPOSE_FEMALE", "UCLA BHHBF2 Adipose Female Only" - ], - [ - "UCLA_BHHBF2_ADIPOSE_2005", - "UCLA BHHBF2 Adipose (2005) mlratio **" ] ], "Brain": [ [ + "UCLA_BHHBF2_BRAIN_2005", + "UCLA BHHBF2 Brain (2005) mlratio" + ], + [ "UCLA_BHHBF2_BRAIN_MALE", "UCLA BHHBF2 Brain Male Only" ], [ "UCLA_BHHBF2_BRAIN_FEMALE", "UCLA BHHBF2 Brain Female Only" - ], - [ - "UCLA_BHHBF2_BRAIN_2005", - "UCLA BHHBF2 Brain (2005) mlratio **" ] ], "Genotypes": [ @@ -884,30 +848,30 @@ ], "Liver": [ [ + "UCLA_BHHBF2_LIVER_2005", + "UCLA BHHBF2 Liver (2005) mlratio" + ], + [ "UCLA_BHHBF2_LIVER_MALE", "UCLA BHHBF2 Liver Male Only" ], [ "UCLA_BHHBF2_LIVER_FEMALE", "UCLA BHHBF2 Liver Female Only" - ], - [ - "UCLA_BHHBF2_LIVER_2005", - "UCLA BHHBF2 Liver (2005) mlratio **" ] ], "Muscle": [ [ + "UCLA_BHHBF2_MUSCLE_2005", + "UCLA BHHBF2 Muscle (2005) mlratio" + ], + [ "UCLA_BHHBF2_MUSCLE_MALE", "UCLA BHHBF2 Muscle Male Only" ], [ "UCLA_BHHBF2_MUSCLE_FEMALE", "UCLA BHHBF2 Muscle Female Only" - ], - [ - "UCLA_BHHBF2_MUSCLE_2005", - "UCLA BHHBF2 Muscle (2005) mlratio **" ] ], "Phenotypes": [ @@ -918,6 +882,16 @@ ] }, "BXD": { + "Adrenal Gland": [ + [ + "INIA_Adrenal_RMA_0612", + "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA" + ], + [ + "INIA_Adrenal_RMA_Ex_0612", + "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level" + ] + ], "Amygdala": [ [ "INIA_AmgCoh_0311", @@ -934,6 +908,10 @@ [ "INIA_Amg_BLA_RMA_F_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" + ], + [ + "INIA_Amg_BLA_Ex-RMA_1110", + "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA" ] ], "Brain": [ @@ -946,10 +924,6 @@ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" ], [ - "BR_U_0805_M", - "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" - ], - [ "BR_U_0805_R", "UTHSC Brain mRNA U74Av2 (Aug05) RMA" ], @@ -958,6 +932,10 @@ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" ], [ + "BR_U_0805_M", + "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" + ], + [ "CB_M_0204_P", "INIA Brain mRNA M430 (Feb04) PDNN" ] @@ -978,10 +956,6 @@ ], "Cerebellum": [ [ - "CB_M_1004_M", - "SJUT Cerebellum mRNA M430 (Oct04) MAS5" - ], - [ "CB_M_1004_R", "SJUT Cerebellum mRNA M430 (Oct04) RMA" ], @@ -990,6 +964,10 @@ "SJUT Cerebellum mRNA M430 (Oct04) PDNN" ], [ + "CB_M_1004_M", + "SJUT Cerebellum mRNA M430 (Oct04) MAS5" + ], + [ "CB_M_1003_M", "SJUT Cerebellum mRNA M430 (Oct03) MAS5" ] @@ -1000,6 +978,10 @@ "Eye M430v2 (Sep08) RMA" ], [ + "gn10", + "Eye M430v2 No Mutant/Mutant (Aug12) RMA **" + ], + [ "Eye_M2_0908_R_NB", "Eye M430v2 Mutant Gpnmb (Sep08) RMA **" ], @@ -1008,14 +990,14 @@ "Eye M430v2 WT Gpnmb (Sep08) RMA **" ], [ - "Eye_M2_0908_WTWT", - "Eye M430v2 WT WT (Sep08) RMA **" - ], - [ "Eye_M2_0908_R_MT", "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" ], [ + "Eye_M2_0908_WTWT", + "Eye M430v2 WT WT (Sep08) RMA **" + ], + [ "Eye_M2_0908_R_WT", "Eye M430v2 WT Tyrp1 (Sep08) RMA **" ], @@ -1104,6 +1086,14 @@ [ "UT_ILM_BXD_hipp_RSE_0909", "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" + ], + [ + "UTHSC_BXD_HArev3_0912", + "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA **" + ], + [ + "UTHSC_BXD_H_0912", + "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level **" ] ], "Hypothalamus": [ @@ -1118,6 +1108,10 @@ [ "INIA_Hyp_F_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" + ], + [ + "INIA_Hyp_RMA_Ex-1110", + "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)" ] ], "Kidney": [ @@ -1138,12 +1132,12 @@ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" ], [ - "MA_M2_0706_P", - "Mouse Kidney M430v2 (Jul06) PDNN" - ], - [ "MA_M2_0706_R", "Mouse Kidney M430v2 (Jul06) RMA" + ], + [ + "MA_M2_0706_P", + "Mouse Kidney M430v2 (Jul06) PDNN" ] ], "Leucocytes": [ @@ -1158,6 +1152,18 @@ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" ], [ + "GenEx_BXD_liverEt_M5_0912", + "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes **" + ], + [ + "GenEx_BXD_liverEt_M5F_0912", + "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females **" + ], + [ + "GenEx_BXD_liverEt_M5M_0912", + "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males **" + ], + [ "GenEx_BXD_liverSal_RMA_F_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **" ], @@ -1194,18 +1200,22 @@ [ "HZI_0408_M", "HZI Lung M430v2 (Apr08) MAS5" + ], + [ + "HZI_PR8M_Q_0612", + "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females **" ] ], "Midbrain": [ [ - "VUBXDMouseMidBrainQ0212", - "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile" + "VUBXDMouseMidBrainQ0512", + "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile **" ] ], "Muscle": [ [ "EPFLMouseMuscleRMA1211", - "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **" + "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **" ], [ "EPFLMouseMuscleHFDRMA1211", @@ -1218,12 +1228,12 @@ ], "Neocortex": [ [ - "DevNeocortex_ILM6.2P14RInv_1111", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **" + "DevNeocortex_ILM6.2P3RInv_1111", + "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" ], [ - "DevNeocortex_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **" + "DevNeocortex_ILM6.2P14RInv_1111", + "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv" ], [ "HQFNeoc_1210v2_RankInv", @@ -1238,12 +1248,12 @@ "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" ], [ - "DevNeocortex_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **" + "DevNeocortex_ILM6.2P14RInv_1110", + "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" ], [ - "DevNeocortex_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **" + "DevNeocortex_ILM6.2P3RInv_1110", + "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" ] ], "Nucleus Accumbens": [ @@ -1266,12 +1276,24 @@ "BXD Published Phenotypes" ] ], - "Prefrontal Cortex": [ + "Pituitary Gland": [ [ - "VCUEtOH_1206_R", - "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" + "INIA_PG_RMA_0612", + "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA" ], [ + "INIA_PG_RMA_Ex_0612", + "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" + ] + ], + "Popliteal Lymph Node": [ + [ + "STJ_PLN_0912", + "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA **" + ] + ], + "Prefrontal Cortex": [ + [ "VCUSal_1206_R", "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" ], @@ -1280,6 +1302,10 @@ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" ], [ + "VCUEtOH_1206_R", + "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" + ], + [ "VCU_PF_Air_0111_R", "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **" ], @@ -1294,16 +1320,20 @@ ], "Retina": [ [ - "Illum_Retina_BXD_RankInv0410", - "HEI Retina Illumina V6.2 (April 2010) RankInv" + "G2NEI_ILM_Retina_BXD_RI0410", + "Normal HEI Retina (April 2010) RankInv" ], [ - "B6D2ONCILM_0412", - "B6D2 ONC Illumina v6.1 (Apr12) RankInv **" + "Illum_Retina_BXD_RankInv0410", + "Full HEI Retina (April 2010) RankInv" ], [ "ONCRetILM6_0412", - "ONC Retina Illumina V6.2 (Apr12) RankInv **" + "ONC HEI Retina (April 2012) RankInv" + ], + [ + "B6D2ONCILM_0412", + "B6D2 ONC Retina (April 2012) RankInv **" ], [ "HEIONCvsCRetILM6_0911", @@ -1312,26 +1342,6 @@ [ "G2HEIONCRetILM6_0911", "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ - "HEIONCRetILM6_0911", - "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ - "ILM_Retina_BXD_F_RankInv1210", - "HEI Retina Females Illumina V6.2 (Dec10) RankInv **" - ], - [ - "ILM_Retina_BXD_M_RankInv1210", - "HEI Retina Males Illumina V6.2 (Dec10) RankInv **" - ], - [ - "ILM_Retina_BXD_FM_RankInv1210", - "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **" - ], - [ - "G2NEI_ILM_Retina_BXD_RI0410", - "G2NEI Retina Illumina V6.2 (April 2010) RankInv **" ] ], "Spleen": [ @@ -1340,32 +1350,40 @@ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" ], [ + "UTHSC_SPL_RMA_1210M", + "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males" + ], + [ + "UTHSC_SPL_RMA_1210F", + "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females" + ], + [ "UTHSC_SPL_RMA_1010", "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" ], [ + "UTK_BXDSpl_VST_0110", + "UTK Spleen ILM6.1 (Jan10) VST" + ], + [ "IoP_SPL_RMA_0509", "IoP Affy MOE 430v2 Spleen (May09) RMA" ], [ "Illum_BXD_Spl_1108", "UWA Illumina Spleen (Nov08) RSN **" - ], - [ - "UTK_BXDSpl_VST_0110", - "UTK Spleen ILM6.1 (Jan10) VST" ] ], "Striatum": [ [ - "DevStriatum_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **" - ], - [ "DevStriatum_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **" ], [ + "DevStriatum_ILM6.2P3RInv_1111", + "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **" + ], + [ "UTHSC_Striatum_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" ], @@ -1430,16 +1448,16 @@ ], "Ventral Tegmental Area": [ [ - "VCUEtOH_0609_R", - "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" - ], - [ "VCUSal_0609_R", "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **" ], [ "VCUEtvsSal_0609_R", "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **" + ], + [ + "VCUEtOH_0609_R", + "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" ] ] }, @@ -1464,6 +1482,12 @@ "BXH Genotypes" ] ], + "Liver": [ + [ + "GSE16780BXH_UCLA_ML0911", + "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA" + ] + ], "Phenotypes": [ [ "BXHPublish", @@ -1474,30 +1498,30 @@ "CTB6F2": { "Adipose": [ [ - "UCLA_CTB6B6CTF2_ADIPOSE_MALE", - "UCLA CTB6B6CTF2 Adipose Male mlratio **" + "UCLA_CTB6B6CTF2_ADIPOSE_2005", + "UCLA CTB6/B6CTF2 Adipose (2005) mlratio" ], [ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", "UCLA CTB6B6CTF2 Adipose Female mlratio **" ], [ - "UCLA_CTB6B6CTF2_ADIPOSE_2005", - "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **" + "UCLA_CTB6B6CTF2_ADIPOSE_MALE", + "UCLA CTB6B6CTF2 Adipose Male mlratio **" ] ], "Brain": [ [ - "UCLA_CTB6B6CTF2_BRAIN_MALE", - "UCLA CTB6B6CTF2 Brain Male mlratio **" + "UCLA_CTB6B6CTF2_BRAIN_2005", + "UCLA CTB6/B6CTF2 Brain (2005) mlratio" ], [ "UCLA_CTB6B6CTF2_BRAIN_FEMALE", "UCLA CTB6B6CTF2 Brain Female mlratio **" ], [ - "UCLA_CTB6B6CTF2_BRAIN_2005", - "UCLA CTB6/B6CTF2 Brain (2005) mlratio **" + "UCLA_CTB6B6CTF2_BRAIN_MALE", + "UCLA CTB6B6CTF2 Brain Male mlratio **" ] ], "Genotypes": [ @@ -1508,30 +1532,30 @@ ], "Liver": [ [ - "UCLA_CTB6B6CTF2_LIVER_MALE", - "UCLA CTB6B6CTF2 Liver Male mlratio **" + "UCLA_CTB6B6CTF2_LIVER_2005", + "UCLA CTB6/B6CTF2 Liver (2005) mlratio" ], [ "UCLA_CTB6B6CTF2_LIVER_FEMALE", "UCLA CTB6B6CTF2 Liver Female mlratio **" ], [ - "UCLA_CTB6B6CTF2_LIVER_2005", - "UCLA CTB6/B6CTF2 Liver (2005) mlratio **" + "UCLA_CTB6B6CTF2_LIVER_MALE", + "UCLA CTB6B6CTF2 Liver Male mlratio **" ] ], "Muscle": [ [ - "UCLA_CTB6B6CTF2_MUSCLE_MALE", - "UCLA CTB6B6CTF2 Muscle Male mlratio **" + "UCLA_CTB6B6CTF2_MUSCLE_2005", + "UCLA CTB6/B6CTF2 Muscle (2005) mlratio" ], [ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", "UCLA CTB6B6CTF2 Muscle Female mlratio **" ], [ - "UCLA_CTB6B6CTF2_MUSCLE_2005", - "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **" + "UCLA_CTB6B6CTF2_MUSCLE_MALE", + "UCLA CTB6B6CTF2 Muscle Male mlratio **" ] ], "Phenotypes": [ @@ -1550,12 +1574,12 @@ ], "Hippocampus": [ [ - "HC_M2CB_1205_R", - "Hippocampus Consortium M430v2 CXB (Dec05) RMA" - ], - [ "HC_M2CB_1205_P", "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" + ], + [ + "HC_M2CB_1205_R", + "Hippocampus Consortium M430v2 CXB (Dec05) RMA" ] ], "Phenotypes": [ @@ -1660,10 +1684,6 @@ "Hippocampus Illumina (May07) RankInv" ], [ - "Illum_LXS_Hipp_NON_1008", - "Hippocampus Illumina NON (Oct08) RankInv beta" - ], - [ "Illum_LXS_Hipp_RSE_1008", "Hippocampus Illumina RSE (Oct08) RankInv beta" ], @@ -1678,6 +1698,10 @@ [ "Illum_LXS_Hipp_NOS_1008", "Hippocampus Illumina NOS (Oct08) RankInv beta" + ], + [ + "Illum_LXS_Hipp_NON_1008", + "Hippocampus Illumina NON (Oct08) RankInv beta" ] ], "Phenotypes": [ @@ -1688,16 +1712,16 @@ ], "Prefrontal Cortex": [ [ - "VCUEtOH_0806_R", - "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" - ], - [ "VCUSal_0806_R", "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" ], [ "VCUEt_vs_Sal_0806_R", "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **" + ], + [ + "VCUEtOH_0806_R", + "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" ] ] }, @@ -1710,16 +1734,20 @@ ], "Hippocampus": [ [ - "UMUTAffyExon_0209_RMA_MDP", - "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" - ], - [ "HC_M2_0606_MDP", "Hippocampus Consortium M430v2 (Jun06) RMA MDP" + ], + [ + "UMUTAffyExon_0209_RMA_MDP", + "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" ] ], "Liver": [ [ + "GSE16780MDP_UCLA_ML0911", + "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA" + ], + [ "JAX_CSB_L_0711", "JAX Liver Affy M430 2.0 (Jul11) MDP" ], @@ -1921,19 +1949,19 @@ "human": [ [ "AD-cases-controls", - "AD Cases & Controls (Liang)" + "Alzheimer's Disease Brain (Liang)" ], [ "AD-cases-controls-Myers", - "AD Cases & Controls (Myers)" + "Alzheimer's Disease Brain (Myers)" ], [ "CANDLE", - "CANDLE" + "CANDLE Cognitive Development (TUCI)" ], [ "CEPH-2004", - "CEPH Families" + "CEPH Families Cell Lines" ], [ "HB", @@ -1941,11 +1969,11 @@ ], [ "HLC", - "Human Liver Cohort" + "Human Liver Cohort (Merck)" ], [ "HSB", - "KIN/YSM" + "Human Brain Transcriptome (Yale/Kavli)" ] ], "macaque monkey": [ @@ -1972,6 +2000,14 @@ "B6D2F2" ], [ + "B6D2F2-PSU", + "B6D2F2 PSU" + ], + [ + "B6D2RI", + "B6D2RI Aged" + ], + [ "BDF2-1999", "BDF2 UCLA" ], @@ -2301,30 +2337,14 @@ "Amygdala mRNA" ], [ - "Caudal Ganglionic Eminence", - "Caudal Ganglionic Eminence mRNA" - ], - [ "Cerebellar Cortex", "Cerebellar Cortex mRNA" ], [ - "Diencephalon", - "Diencephalon mRNA" - ], - [ - "Dorsal Thalamus", - "Dorsal Thalamus mRNA" - ], - [ "Dorsolateral Prefrontal Cortex", "Dorsolateral Prefrontal Cortex mRNA" ], [ - "Frontal Cerebral Wall", - "Frontal Cerebral Wall mRNA" - ], - [ "Hippocampus", "Hippocampus mRNA" ], @@ -2333,14 +2353,6 @@ "Inferior Temporal Cortex mRNA" ], [ - "Lateral Ganglionic Eminence", - "Lateral Ganglionic Eminence mRNA" - ], - [ - "Medial Ganglionic Eminence", - "Medial Ganglionic Eminence mRNA" - ], - [ "Medial Prefrontal Cortex", "Medial Prefrontal Cortex mRNA" ], @@ -2349,18 +2361,10 @@ "Mediodorsal Nucleus of Thalamus mRNA" ], [ - "Occipital Cerebral Wall", - "Occipital Cerebral Wall mRNA" - ], - [ "Orbital Prefrontal Cortex", "Orbital Prefrontal Cortex mRNA" ], [ - "Parietal Cerebral Wall", - "Parietal Cerebral Wall mRNA" - ], - [ "Posterior Inferior Parietal Cortex", "Posterior Inferior Parietal Cortex mRNA" ], @@ -2389,18 +2393,6 @@ "Striatum mRNA" ], [ - "Temporal Cerebral Wall", - "Temporal Cerebral Wall mRNA" - ], - [ - "Upper (Rostral) Rhombic Lip", - "Upper (Rostral) Rhombic Lip mRNA" - ], - [ - "Ventral Forebrain", - "Ventral Forebrain mRNA" - ], - [ "Ventrolateral Prefrontal Cortex", "Ventrolateral Prefrontal Cortex mRNA" ] @@ -2465,6 +2457,10 @@ [ "Eye", "Eye mRNA" + ], + [ + "Liver", + "Liver mRNA" ] ], "B6BTBRF2": [ @@ -2495,6 +2491,34 @@ "Brain mRNA" ] ], + "B6D2F2-PSU": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ], + [ + "Muscle", + "Muscle mRNA" + ] + ], + "B6D2RI": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ], + [ + "Hippocampus", + "Hippocampus mRNA" + ] + ], "BDF2-1999": [ [ "Phenotypes", @@ -2585,6 +2609,10 @@ "Genotypes" ], [ + "Adrenal Gland", + "Adrenal Gland mRNA" + ], + [ "Amygdala", "Amygdala mRNA" ], @@ -2649,6 +2677,14 @@ "Nucleus Accumbens mRNA" ], [ + "Pituitary Gland", + "Pituitary Gland mRNA" + ], + [ + "Popliteal Lymph Node", + "Popliteal Lymph Node mRNA" + ], + [ "Prefrontal Cortex", "Prefrontal Cortex mRNA" ], @@ -2693,6 +2729,10 @@ [ "Cartilage", "Cartilage mRNA" + ], + [ + "Liver", + "Liver mRNA" ] ], "CTB6F2": [ diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js index 5e19ca46..34fa7503 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js @@ -1,4 +1,4 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { $(function() { diff --git a/wqflask/wqflask/static/new/javascript/login.coffee b/wqflask/wqflask/static/new/javascript/login.coffee new file mode 100644 index 00000000..c49353d5 --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/login.coffee @@ -0,0 +1,42 @@ +$ -> + + + modalize = (event) -> + event.preventDefault() + console.log("in modal_replace:", $(this).attr("href")) + $.colorbox( + open: true + href: this.href + onComplete: -> + $(".focused").focus() + ) + + + + + $(document).on("click", ".modalize", modalize) + + form_success = (data) -> + $.colorbox( + open: true + html: data + onComplete: -> + $("form").on("submit", submit_form) + ) + + + submit_form = (event) -> + event.preventDefault() + submit_to = $(this).attr('action') + data = $(this).serialize() + console.log("submit_to is:", submit_to) + $.ajax( + type: "POST" + url: submit_to + data: data + dataType: "html" + success: form_success + ) + + + $("form").on("submit", submit_form) diff --git a/wqflask/wqflask/static/new/javascript/login.js b/wqflask/wqflask/static/new/javascript/login.js new file mode 100644 index 00000000..6c6120ec --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/login.js @@ -0,0 +1,44 @@ +// Generated by CoffeeScript 1.4.0 +(function() { + + $(function() { + var form_success, modalize, submit_form; + modalize = function(event) { + event.preventDefault(); + console.log("in modal_replace:", $(this).attr("href")); + return $.colorbox({ + open: true, + href: this.href, + onComplete: function() { + return $(".focused").focus(); + } + }); + }; + $(document).on("click", ".modalize", modalize); + form_success = function(data) { + return $.colorbox({ + open: true, + html: data, + onComplete: function() { + return $("form").on("submit", submit_form); + } + }); + }; + submit_form = function(event) { + var data, submit_to; + event.preventDefault(); + submit_to = $(this).attr('action'); + data = $(this).serialize(); + console.log("submit_to is:", submit_to); + return $.ajax({ + type: "POST", + url: submit_to, + data: data, + dataType: "html", + success: form_success + }); + }; + return $("form").on("submit", submit_form); + }); + +}).call(this); diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.coffee b/wqflask/wqflask/static/new/javascript/marker_regression.coffee index 7eb62ec1..2f8da6dc 100644 --- a/wqflask/wqflask/static/new/javascript/marker_regression.coffee +++ b/wqflask/wqflask/static/new/javascript/marker_regression.coffee @@ -1,212 +1,302 @@ $ -> - sort_number = (a, b) -> - return a - b + class Manhattan_Plot + constructor: (@plot_height, @plot_width) -> + @qtl_results = js_data.qtl_results + console.log("qtl_results are:", @qtl_results) + @chromosomes = js_data.chromosomes + @total_length = 0 - class Permutation_Histogram - constructor: -> - @process_data() - @display_graph() - - process_data: -> - # Put the data in a format needed for graphing - # The permutation count for a particular integer range (10-11 or 12-13 for example) - # will be on the y-axis; LRS values will be on the x-axis - lrs_array = js_data.lrs_array - bars = {} - for lrs in lrs_array - floored = Math.floor(lrs) - if floored not of bars - bars[floored] = 0 - bars[floored] += 1 - - # Now we need to take the unordered hash - # And order the keys - keys = [] - for key of bars - keys.push(key) - - keys.sort(sort_number) + @max_chr = @get_max_chr() + + @x_coords = [] + @y_coords = [] + @marker_names = [] + console.time('Create coordinates') + @create_coordinates() + console.log("@x_coords: ", @x_coords) + console.timeEnd('Create coordinates') + [@chr_lengths, @cumulative_chr_lengths] = @get_chr_lengths() + + # Buffer to allow for the ticks/labels to be drawn + @x_buffer = @plot_width/30 + @y_buffer = @plot_height/20 - - # Now that we have the ordered keys above - # We can build an array of arrays that jqPlot will use - @bars_ordered = [] - for key in keys - @bars_ordered.push([parseInt(key), bars[key]]) - - console.log("bars is:", bars) - console.log("keys are:", keys) - console.log("bars_ordered are:", @bars_ordered) - #return bars_ordered - - display_graph: -> - - $.jqplot('permutation_histogram', [@bars_ordered], - title: 'Permutation Histogram' - seriesDefaults: - renderer:$.jqplot.BarRenderer - rendererOptions: - barWidth: 15 - pointLabels: - show: true - axesDefaults: - labelRenderer: $.jqplot.CanvasAxisLabelRenderer - axes: - xaxis: - min: 0 - label: "LRS" - pad: 1.1 - yaxis: - min: 0 - label: "Frequency" - ) - - #process_qtl_results = -> - # qtl_results = js_data.qtl_results - - #display_manhattan_plot = -> + #@x_max = d3.max(@x_coords) + @x_max = @total_length + @y_max = d3.max(@y_coords) * 1.2 + @svg = @create_svg() + @plot_coordinates = _.zip(@x_coords, @y_coords, @marker_names) + + @plot_height -= @y_buffer + @create_scales() + console.time('Create graph') + @create_graph() + console.timeEnd('Create graph') + get_max_chr: () -> + max_chr = 0 + for result in @qtl_results + chr = parseInt(result.chr) + if not _.isNaN(chr) + if chr > max_chr + max_chr = chr + return max_chr - #bars_ordered = process_lrs_array() - #display_permutation_histogram(bars_ordered) - - class Chromosome - constructor: (@name) -> - @max_mb = 0 - @plot_points = [] + get_chr_lengths: () -> + ### + Gets a list of both individual and cumulative (the position of one on the graph + is its own length plus the lengths of all preceding chromosomes) lengths in order + to draw the vertical lines separating chromosomes and the chromosome labels - process_point: (mb, lrs) -> - if mb > @max_mb - @max_mb = mb - @plot_points.push([mb, lrs]) + ### - display_graph: (max_lrs) -> - div_name = 'manhattan_plot_' + @name - console.log("div_name:", div_name) - - #console.log("max_lrs is", max_lrs) - - - x_axis_max = Math.ceil(@max_mb/25) * 25 - x_axis_ticks = [] - x_tick = 0 - while (x_tick <= x_axis_max) - x_axis_ticks.push(x_tick) - x_tick += 25 + cumulative_chr_lengths = [] + chr_lengths = [] + total_length = 0 + for key of @chromosomes + this_length = @chromosomes[key] + chr_lengths.push(this_length) + cumulative_chr_lengths.push(total_length + this_length) + total_length += this_length - - plot_options = - title: @name - seriesDefaults: - showLine: false - markerRenderer: $.jqplot.MarkerRenderer - markerOptions: - style: "filledCircle" - size: 3 - axesDefaults: - tickRenderer: $.jqplot.CanvasAxisTickRenderer - labelRenderer: $.jqplot.CanvasAxisLabelRenderer - axes: - xaxis: - min: 0 - max: x_axis_max - ticks: x_axis_ticks - tickOptions: - angle: 90 - showGridline: false - formatString: '%d' - label: "Megabases" + #console.log("total length is:", total_length) - - if @name == "1" - plot_options.axes.yaxis = - min: 0 - max: Math.floor(max_lrs + 0.1 * max_lrs) - tickInterval: 1 - label: "LRS" - tickOptions: - formatString: '%d' - showGridline: false + return [chr_lengths, cumulative_chr_lengths] + + create_coordinates: () -> + chr_lengths = [] + chr_seen = [] + for result in js_data.qtl_results + chr_length = @chromosomes[result.chr] + if not(result.chr in chr_seen) + chr_seen.push(result.chr) + chr_lengths.push(chr_length) + if result.chr != "1" + @total_length += chr_lengths[chr_lengths.length - 2] + @x_coords.push(@total_length + parseFloat(result.Mb)) + @y_coords.push(result.lod_score) + @marker_names.push(result.name) + @total_length += chr_lengths[chr_lengths.length-1] + + show_marker_in_table: (marker_info) -> + console.log("in show_marker_in_table") + ### Searches for the select marker in the results table below ### + if marker_info + marker_name = marker_info[2] else - plot_options.axes.yaxis = - show: false - min: 0 - max: Math.floor(max_lrs + 0.1 * max_lrs) - tickInterval: 1 - tickOptions: - formatString: '%d' - showGridline: false - - $.jqplot(div_name, [@plot_points], plot_options) + marker_name = "" + $("#qtl_results_filter").find("input:first").val(marker_name).keypress() - class Manhattan_Plot - constructor: -> - @max_lrs = 0 + create_svg: () -> + svg = d3.select("#manhattan_plots") + .append("svg") + .attr("class", "manhattan_plot") + .attr("width", @plot_width+@x_buffer) + .attr("height", @plot_height+@y_buffer) - @chromosomes = {} - @build_chromosomes() - - @display_graphs() + return svg - build_chromosomes: -> - for result in js_data.qtl_results - #if result.locus.chromosome == '1' - chromosome = result.locus.chromosome - if chromosome not of @chromosomes - @chromosomes[chromosome] = new Chromosome(chromosome) - mb = parseInt(result.locus.mb) - if result.lrs > @max_lrs - @max_lrs = result.lrs - @chromosomes[chromosome].process_point(mb, result.lrs) - - display_graphs: -> - ### Call display_graph for each chromosome ### - - # First get everything in the right order - numbered_keys = [] - extra_keys = [] - for key of @chromosomes - if isNaN(key) - extra_keys.push(key) + create_graph: () -> + @add_border() + @add_x_axis() + @add_y_axis() + @add_chr_lines() + @fill_chr_areas() + @add_chr_labels() + @add_plot_points() + + add_border: () -> + border_coords = [[@y_buffer, @plot_height, @x_buffer, @x_buffer], + [@y_buffer, @plot_height, @plot_width, @plot_width], + [@y_buffer, @y_buffer, @x_buffer, @plot_width], + [@plot_height, @plot_height, @x_buffer, @plot_width]] + + @svg.selectAll("line") + .data(border_coords) + .enter() + .append("line") + .attr("y1", (d) => + return d[0] + ) + .attr("y2", (d) => + return d[1] + ) + .attr("x1", (d) => + return d[2] + ) + .attr("x2", (d) => + return d[3] + ) + .style("stroke", "#000") + + create_scales: () -> + @x_scale = d3.scale.linear() + .domain([0, d3.max(@x_coords)]) + .range([@x_buffer, @plot_width]) + + @y_scale = d3.scale.linear() + .domain([0, @y_max]) + .range([@plot_height, @y_buffer]) + + create_x_axis_tick_values: () -> + tick_vals = [] + for val in [25..@cumulative_chr_lengths[0]] when val%25 == 0 + tick_vals.push(val) + + for length, i in @cumulative_chr_lengths + if i == 0 + continue + chr_ticks = [] + tick_count = Math.floor(@chr_lengths[i]/25) + tick_val = parseInt(@cumulative_chr_lengths[i-1]) + for tick in [0..(tick_count-1)] + tick_val += 25 + chr_ticks.push(tick_val) + Array::push.apply tick_vals, chr_ticks + + #console.log("tick_vals:", tick_vals) + return tick_vals + + add_x_axis: () -> + xAxis = d3.svg.axis() + .scale(@x_scale) + .orient("bottom") + .tickValues(@create_x_axis_tick_values()) + + next_chr = 1 + tmp_tick_val = 0 + xAxis.tickFormat((d) => + d3.format("d") #format as integer + if d < @cumulative_chr_lengths[0] + tick_val = d else - numbered_keys.push(key) - - numbered_keys.sort(sort_number) - extra_keys.sort() - keys = numbered_keys.concat(extra_keys) - console.log("keys are:", keys) - - for key in keys - this_class = "manhattan_plot_segment" - if key != "1" - this_class += " no_y_axis" - html = """<div id="manhattan_plot_#{ key }" class=#{ this_class }></div>""" - console.log("html is:", html) - $("#manhattan_plots").append(html) - @chromosomes[key].display_graph(@max_lrs) - - $('.jqplot-yaxis').hide() - $('#manhattan_plot_1').find('.jqplot-yaxis').show() - - #$(".jqplot-yaxis").hide() - #$(".jqplot-yaxis-tick").hide() - + next_chr_length = @cumulative_chr_lengths[next_chr] + if d > next_chr_length + next_chr += 1 + tmp_tick_val = 25 + tick_val = tmp_tick_val + else + tmp_tick_val += 25 + tick_val = tmp_tick_val + return (tick_val) + ) + + @svg.append("g") + .attr("class", "x_axis") + .attr("transform", "translate(0," + @plot_height + ")") + .call(xAxis) + .selectAll("text") + .attr("text-anchor", "right") + .attr("dx", "-1.6em") + .attr("transform", (d) => + return "translate(-12,0) rotate(-90)" + ) + #.attr("dy", "-1.0em") + + + add_y_axis: () -> + yAxis = d3.svg.axis() + .scale(@y_scale) + .orient("left") + .ticks(5) - #process_data: -> - # qtl_results = js_data.qtl_results - # #console.log("qtl_results: ", qtl_results) - # @plot_points = [] - # @max_mb = 0 - # for result in qtl_results - # if result.locus.chromosome == '1' - # mb = parseInt(result.locus.mb) - # if mb > @max_mb - # @max_mb = mb - # @plot_points.push([mb, result.lrs]) + @svg.append("g") + .attr("class", "y_axis") + .attr("transform", "translate(" + @x_buffer + ",0)") + .call(yAxis) + + add_chr_lines: () -> + @svg.selectAll("line") + .data(@cumulative_chr_lengths, (d) => + return d + ) + .enter() + .append("line") + .attr("x1", @x_scale) + .attr("x2", @x_scale) + .attr("y1", @y_buffer) + .attr("y2", @plot_height) + .style("stroke", "#ccc") + fill_chr_areas: () -> + @svg.selectAll("rect.chr_fill_area_1") + .data(_.zip(@chr_lengths, @cumulative_chr_lengths), (d) => + return d + ) + .enter() + .append("rect") + .attr("class", "chr_fill_area_1") + .attr("x", (d, i) => + if i == 0 + return @x_scale(0) + else + return @x_scale(@cumulative_chr_lengths[i-1]) + ) + .attr("y", @y_buffer) + .attr("width", (d) => + return @x_scale(d[0]) + ) + .attr("height", @plot_height-@y_buffer) + + add_chr_labels: () -> + chr_names = [] + for key of @chromosomes + chr_names.push(key) + chr_info = _.zip(chr_names, @chr_lengths, @cumulative_chr_lengths) + @svg.selectAll("text") + .data(chr_info, (d) => + return d + ) + .enter() + .append("text") + .text((d) => + return d[0] + ) + .attr("x", (d) => + return @x_scale(d[2] - d[1]/2) + ) + .attr("y", @plot_height * 0.1) + .attr("dx", "0em") + .attr("text-anchor", "middle") + .attr("font-family", "sans-serif") + .attr("font-size", "18px") + .attr("fill", "grey") + add_plot_points: () -> + @svg.selectAll("circle") + .data(@plot_coordinates) + .enter() + .append("circle") + .attr("cx", (d) => + return @x_buffer + ((@plot_width-@x_buffer) * d[0]/@x_max) + ) + .attr("cy", (d) => + return @plot_height - ((@plot_height-@y_buffer) * d[1]/@y_max) + ) + .attr("r", 2) + .attr("id", (d) => + return "point_" + String(d[2]) + ) + .classed("circle", true) + .on("mouseover", (d) => + console.log("d3.event is:", d3.event) + console.log("d is:", d) + this_id = "point_" + String(d[2]) + d3.select("#" + this_id).classed("d3_highlight", true) + .attr("r", 5) + .attr("fill", "yellow") + .call(@show_marker_in_table(d)) + ) + .on("mouseout", (d) => + this_id = "point_" + String(d[2]) + d3.select("#" + this_id).classed("d3_highlight", false) + .attr("r", 2) + .attr("fill", "black") + .call(@show_marker_in_table()) + ) - new Permutation_Histogram - new Manhattan_Plot
\ No newline at end of file + console.time('Create manhattan plot') + new Manhattan_Plot(600, 1200) + console.timeEnd('Create manhattan plot')
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.js b/wqflask/wqflask/static/new/javascript/marker_regression.js index 19a7d051..50578125 100644 --- a/wqflask/wqflask/static/new/javascript/marker_regression.js +++ b/wqflask/wqflask/static/new/javascript/marker_regression.js @@ -1,226 +1,276 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { + var __indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; }; $(function() { - var Chromosome, Manhattan_Plot, Permutation_Histogram, sort_number; - sort_number = function(a, b) { - return a - b; - }; - Permutation_Histogram = (function() { - - function Permutation_Histogram() { - this.process_data(); - this.display_graph(); + var Manhattan_Plot; + Manhattan_Plot = (function() { + + function Manhattan_Plot(plot_height, plot_width) { + var _ref; + this.plot_height = plot_height; + this.plot_width = plot_width; + this.qtl_results = js_data.qtl_results; + console.log("qtl_results are:", this.qtl_results); + this.chromosomes = js_data.chromosomes; + this.total_length = 0; + this.max_chr = this.get_max_chr(); + this.x_coords = []; + this.y_coords = []; + this.marker_names = []; + console.time('Create coordinates'); + this.create_coordinates(); + console.log("@x_coords: ", this.x_coords); + console.timeEnd('Create coordinates'); + _ref = this.get_chr_lengths(), this.chr_lengths = _ref[0], this.cumulative_chr_lengths = _ref[1]; + this.x_buffer = this.plot_width / 30; + this.y_buffer = this.plot_height / 20; + this.x_max = this.total_length; + this.y_max = d3.max(this.y_coords) * 1.2; + this.svg = this.create_svg(); + this.plot_coordinates = _.zip(this.x_coords, this.y_coords, this.marker_names); + this.plot_height -= this.y_buffer; + this.create_scales(); + console.time('Create graph'); + this.create_graph(); + console.timeEnd('Create graph'); } - Permutation_Histogram.prototype.process_data = function() { - var bars, floored, key, keys, lrs, lrs_array, _i, _j, _len, _len1; - lrs_array = js_data.lrs_array; - bars = {}; - for (_i = 0, _len = lrs_array.length; _i < _len; _i++) { - lrs = lrs_array[_i]; - floored = Math.floor(lrs); - if (!(floored in bars)) { - bars[floored] = 0; + Manhattan_Plot.prototype.get_max_chr = function() { + var chr, max_chr, result, _i, _len, _ref; + max_chr = 0; + _ref = this.qtl_results; + for (_i = 0, _len = _ref.length; _i < _len; _i++) { + result = _ref[_i]; + chr = parseInt(result.chr); + if (!_.isNaN(chr)) { + if (chr > max_chr) { + max_chr = chr; + } } - bars[floored] += 1; - } - keys = []; - for (key in bars) { - keys.push(key); } - keys.sort(sort_number); - this.bars_ordered = []; - for (_j = 0, _len1 = keys.length; _j < _len1; _j++) { - key = keys[_j]; - this.bars_ordered.push([parseInt(key), bars[key]]); + return max_chr; + }; + + Manhattan_Plot.prototype.get_chr_lengths = function() { + /* + Gets a list of both individual and cumulative (the position of one on the graph + is its own length plus the lengths of all preceding chromosomes) lengths in order + to draw the vertical lines separating chromosomes and the chromosome labels + */ + + var chr_lengths, cumulative_chr_lengths, key, this_length, total_length; + cumulative_chr_lengths = []; + chr_lengths = []; + total_length = 0; + for (key in this.chromosomes) { + this_length = this.chromosomes[key]; + chr_lengths.push(this_length); + cumulative_chr_lengths.push(total_length + this_length); + total_length += this_length; } - console.log("bars is:", bars); - console.log("keys are:", keys); - return console.log("bars_ordered are:", this.bars_ordered); + return [chr_lengths, cumulative_chr_lengths]; }; - Permutation_Histogram.prototype.display_graph = function() { - return $.jqplot('permutation_histogram', [this.bars_ordered], { - title: 'Permutation Histogram', - seriesDefaults: { - renderer: $.jqplot.BarRenderer, - rendererOptions: { - barWidth: 15 - }, - pointLabels: { - show: true - } - }, - axesDefaults: { - labelRenderer: $.jqplot.CanvasAxisLabelRenderer - }, - axes: { - xaxis: { - min: 0, - label: "LRS", - pad: 1.1 - }, - yaxis: { - min: 0, - label: "Frequency" + Manhattan_Plot.prototype.create_coordinates = function() { + var chr_length, chr_lengths, chr_seen, result, _i, _len, _ref, _ref1; + chr_lengths = []; + chr_seen = []; + _ref = js_data.qtl_results; + for (_i = 0, _len = _ref.length; _i < _len; _i++) { + result = _ref[_i]; + chr_length = this.chromosomes[result.chr]; + if (!(_ref1 = result.chr, __indexOf.call(chr_seen, _ref1) >= 0)) { + chr_seen.push(result.chr); + chr_lengths.push(chr_length); + if (result.chr !== "1") { + this.total_length += chr_lengths[chr_lengths.length - 2]; } } - }); + this.x_coords.push(this.total_length + parseFloat(result.Mb)); + this.y_coords.push(result.lod_score); + this.marker_names.push(result.name); + } + return this.total_length += chr_lengths[chr_lengths.length - 1]; }; - return Permutation_Histogram; - - })(); - Chromosome = (function() { - - function Chromosome(name) { - this.name = name; - this.max_mb = 0; - this.plot_points = []; - } + Manhattan_Plot.prototype.show_marker_in_table = function(marker_info) { + var marker_name; + console.log("in show_marker_in_table"); + /* Searches for the select marker in the results table below + */ - Chromosome.prototype.process_point = function(mb, lrs) { - if (mb > this.max_mb) { - this.max_mb = mb; + if (marker_info) { + marker_name = marker_info[2]; + } else { + marker_name = ""; } - return this.plot_points.push([mb, lrs]); + return $("#qtl_results_filter").find("input:first").val(marker_name).keypress(); }; - Chromosome.prototype.display_graph = function(max_lrs) { - var div_name, plot_options, x_axis_max, x_axis_ticks, x_tick; - div_name = 'manhattan_plot_' + this.name; - console.log("div_name:", div_name); - x_axis_max = Math.ceil(this.max_mb / 25) * 25; - x_axis_ticks = []; - x_tick = 0; - while (x_tick <= x_axis_max) { - x_axis_ticks.push(x_tick); - x_tick += 25; - } - plot_options = { - title: this.name, - seriesDefaults: { - showLine: false, - markerRenderer: $.jqplot.MarkerRenderer, - markerOptions: { - style: "filledCircle", - size: 3 - } - }, - axesDefaults: { - tickRenderer: $.jqplot.CanvasAxisTickRenderer, - labelRenderer: $.jqplot.CanvasAxisLabelRenderer - }, - axes: { - xaxis: { - min: 0, - max: x_axis_max, - ticks: x_axis_ticks, - tickOptions: { - angle: 90, - showGridline: false, - formatString: '%d' - }, - label: "Megabases" - } - } - }; - if (this.name === "1") { - plot_options.axes.yaxis = { - min: 0, - max: Math.floor(max_lrs + 0.1 * max_lrs), - tickInterval: 1, - label: "LRS", - tickOptions: { - formatString: '%d', - showGridline: false - } - }; - } else { - plot_options.axes.yaxis = { - show: false, - min: 0, - max: Math.floor(max_lrs + 0.1 * max_lrs), - tickInterval: 1, - tickOptions: { - formatString: '%d', - showGridline: false - } - }; - } - return $.jqplot(div_name, [this.plot_points], plot_options); + Manhattan_Plot.prototype.create_svg = function() { + var svg; + svg = d3.select("#manhattan_plots").append("svg").attr("class", "manhattan_plot").attr("width", this.plot_width + this.x_buffer).attr("height", this.plot_height + this.y_buffer); + return svg; }; - return Chromosome; + Manhattan_Plot.prototype.create_graph = function() { + this.add_border(); + this.add_x_axis(); + this.add_y_axis(); + this.add_chr_lines(); + this.fill_chr_areas(); + this.add_chr_labels(); + return this.add_plot_points(); + }; - })(); - Manhattan_Plot = (function() { + Manhattan_Plot.prototype.add_border = function() { + var border_coords, + _this = this; + border_coords = [[this.y_buffer, this.plot_height, this.x_buffer, this.x_buffer], [this.y_buffer, this.plot_height, this.plot_width, this.plot_width], [this.y_buffer, this.y_buffer, this.x_buffer, this.plot_width], [this.plot_height, this.plot_height, this.x_buffer, this.plot_width]]; + return this.svg.selectAll("line").data(border_coords).enter().append("line").attr("y1", function(d) { + return d[0]; + }).attr("y2", function(d) { + return d[1]; + }).attr("x1", function(d) { + return d[2]; + }).attr("x2", function(d) { + return d[3]; + }).style("stroke", "#000"); + }; - function Manhattan_Plot() { - this.max_lrs = 0; - this.chromosomes = {}; - this.build_chromosomes(); - this.display_graphs(); - } + Manhattan_Plot.prototype.create_scales = function() { + this.x_scale = d3.scale.linear().domain([0, d3.max(this.x_coords)]).range([this.x_buffer, this.plot_width]); + return this.y_scale = d3.scale.linear().domain([0, this.y_max]).range([this.plot_height, this.y_buffer]); + }; - Manhattan_Plot.prototype.build_chromosomes = function() { - var chromosome, mb, result, _i, _len, _ref, _results; - _ref = js_data.qtl_results; - _results = []; - for (_i = 0, _len = _ref.length; _i < _len; _i++) { - result = _ref[_i]; - chromosome = result.locus.chromosome; - if (!(chromosome in this.chromosomes)) { - this.chromosomes[chromosome] = new Chromosome(chromosome); + Manhattan_Plot.prototype.create_x_axis_tick_values = function() { + var chr_ticks, i, length, tick, tick_count, tick_val, tick_vals, val, _i, _j, _k, _len, _ref, _ref1, _ref2; + tick_vals = []; + for (val = _i = 25, _ref = this.cumulative_chr_lengths[0]; 25 <= _ref ? _i <= _ref : _i >= _ref; val = 25 <= _ref ? ++_i : --_i) { + if (val % 25 === 0) { + tick_vals.push(val); + } + } + _ref1 = this.cumulative_chr_lengths; + for (i = _j = 0, _len = _ref1.length; _j < _len; i = ++_j) { + length = _ref1[i]; + if (i === 0) { + continue; } - mb = parseInt(result.locus.mb); - if (result.lrs > this.max_lrs) { - this.max_lrs = result.lrs; + chr_ticks = []; + tick_count = Math.floor(this.chr_lengths[i] / 25); + tick_val = parseInt(this.cumulative_chr_lengths[i - 1]); + for (tick = _k = 0, _ref2 = tick_count - 1; 0 <= _ref2 ? _k <= _ref2 : _k >= _ref2; tick = 0 <= _ref2 ? ++_k : --_k) { + tick_val += 25; + chr_ticks.push(tick_val); } - _results.push(this.chromosomes[chromosome].process_point(mb, result.lrs)); + Array.prototype.push.apply(tick_vals, chr_ticks); } - return _results; + return tick_vals; }; - Manhattan_Plot.prototype.display_graphs = function() { - /* Call display_graph for each chromosome - */ - - var extra_keys, html, key, keys, numbered_keys, this_class, _i, _len; - numbered_keys = []; - extra_keys = []; - for (key in this.chromosomes) { - if (isNaN(key)) { - extra_keys.push(key); + Manhattan_Plot.prototype.add_x_axis = function() { + var next_chr, tmp_tick_val, xAxis, + _this = this; + xAxis = d3.svg.axis().scale(this.x_scale).orient("bottom").tickValues(this.create_x_axis_tick_values()); + next_chr = 1; + tmp_tick_val = 0; + xAxis.tickFormat(function(d) { + var next_chr_length, tick_val; + d3.format("d"); + if (d < _this.cumulative_chr_lengths[0]) { + tick_val = d; } else { - numbered_keys.push(key); + next_chr_length = _this.cumulative_chr_lengths[next_chr]; + if (d > next_chr_length) { + next_chr += 1; + tmp_tick_val = 25; + tick_val = tmp_tick_val; + } else { + tmp_tick_val += 25; + tick_val = tmp_tick_val; + } } - } - numbered_keys.sort(sort_number); - extra_keys.sort(); - keys = numbered_keys.concat(extra_keys); - console.log("keys are:", keys); - for (_i = 0, _len = keys.length; _i < _len; _i++) { - key = keys[_i]; - this_class = "manhattan_plot_segment"; - if (key !== "1") { - this_class += " no_y_axis"; + return tick_val; + }); + return this.svg.append("g").attr("class", "x_axis").attr("transform", "translate(0," + this.plot_height + ")").call(xAxis).selectAll("text").attr("text-anchor", "right").attr("dx", "-1.6em").attr("transform", function(d) { + return "translate(-12,0) rotate(-90)"; + }); + }; + + Manhattan_Plot.prototype.add_y_axis = function() { + var yAxis; + yAxis = d3.svg.axis().scale(this.y_scale).orient("left").ticks(5); + return this.svg.append("g").attr("class", "y_axis").attr("transform", "translate(" + this.x_buffer + ",0)").call(yAxis); + }; + + Manhattan_Plot.prototype.add_chr_lines = function() { + var _this = this; + return this.svg.selectAll("line").data(this.cumulative_chr_lengths, function(d) { + return d; + }).enter().append("line").attr("x1", this.x_scale).attr("x2", this.x_scale).attr("y1", this.y_buffer).attr("y2", this.plot_height).style("stroke", "#ccc"); + }; + + Manhattan_Plot.prototype.fill_chr_areas = function() { + var _this = this; + return this.svg.selectAll("rect.chr_fill_area_1").data(_.zip(this.chr_lengths, this.cumulative_chr_lengths), function(d) { + return d; + }).enter().append("rect").attr("class", "chr_fill_area_1").attr("x", function(d, i) { + if (i === 0) { + return _this.x_scale(0); + } else { + return _this.x_scale(_this.cumulative_chr_lengths[i - 1]); } - html = "<div id=\"manhattan_plot_" + key + "\" class=" + this_class + "></div>"; - console.log("html is:", html); - $("#manhattan_plots").append(html); - this.chromosomes[key].display_graph(this.max_lrs); + }).attr("y", this.y_buffer).attr("width", function(d) { + return _this.x_scale(d[0]); + }).attr("height", this.plot_height - this.y_buffer); + }; + + Manhattan_Plot.prototype.add_chr_labels = function() { + var chr_info, chr_names, key, + _this = this; + chr_names = []; + for (key in this.chromosomes) { + chr_names.push(key); } - $('.jqplot-yaxis').hide(); - return $('#manhattan_plot_1').find('.jqplot-yaxis').show(); + chr_info = _.zip(chr_names, this.chr_lengths, this.cumulative_chr_lengths); + return this.svg.selectAll("text").data(chr_info, function(d) { + return d; + }).enter().append("text").text(function(d) { + return d[0]; + }).attr("x", function(d) { + return _this.x_scale(d[2] - d[1] / 2); + }).attr("y", this.plot_height * 0.1).attr("dx", "0em").attr("text-anchor", "middle").attr("font-family", "sans-serif").attr("font-size", "18px").attr("fill", "grey"); + }; + + Manhattan_Plot.prototype.add_plot_points = function() { + var _this = this; + return this.svg.selectAll("circle").data(this.plot_coordinates).enter().append("circle").attr("cx", function(d) { + return _this.x_buffer + ((_this.plot_width - _this.x_buffer) * d[0] / _this.x_max); + }).attr("cy", function(d) { + return _this.plot_height - ((_this.plot_height - _this.y_buffer) * d[1] / _this.y_max); + }).attr("r", 2).attr("id", function(d) { + return "point_" + String(d[2]); + }).classed("circle", true).on("mouseover", function(d) { + var this_id; + console.log("d3.event is:", d3.event); + console.log("d is:", d); + this_id = "point_" + String(d[2]); + return d3.select("#" + this_id).classed("d3_highlight", true).attr("r", 5).attr("fill", "yellow").call(_this.show_marker_in_table(d)); + }).on("mouseout", function(d) { + var this_id; + this_id = "point_" + String(d[2]); + return d3.select("#" + this_id).classed("d3_highlight", false).attr("r", 2).attr("fill", "black").call(_this.show_marker_in_table()); + }); }; return Manhattan_Plot; })(); - new Permutation_Histogram; - return new Manhattan_Plot; + console.time('Create manhattan plot'); + new Manhattan_Plot(600, 1200); + return console.timeEnd('Create manhattan plot'); }); }).call(this); diff --git a/wqflask/wqflask/static/new/javascript/marker_regression_old.coffee b/wqflask/wqflask/static/new/javascript/marker_regression_old.coffee new file mode 100644 index 00000000..7eb62ec1 --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/marker_regression_old.coffee @@ -0,0 +1,212 @@ +$ -> + sort_number = (a, b) -> + return a - b + + + class Permutation_Histogram + constructor: -> + @process_data() + @display_graph() + + process_data: -> + # Put the data in a format needed for graphing + # The permutation count for a particular integer range (10-11 or 12-13 for example) + # will be on the y-axis; LRS values will be on the x-axis + lrs_array = js_data.lrs_array + bars = {} + for lrs in lrs_array + floored = Math.floor(lrs) + if floored not of bars + bars[floored] = 0 + bars[floored] += 1 + + # Now we need to take the unordered hash + # And order the keys + keys = [] + for key of bars + keys.push(key) + + keys.sort(sort_number) + + + # Now that we have the ordered keys above + # We can build an array of arrays that jqPlot will use + @bars_ordered = [] + for key in keys + @bars_ordered.push([parseInt(key), bars[key]]) + + console.log("bars is:", bars) + console.log("keys are:", keys) + console.log("bars_ordered are:", @bars_ordered) + #return bars_ordered + + display_graph: -> + + $.jqplot('permutation_histogram', [@bars_ordered], + title: 'Permutation Histogram' + seriesDefaults: + renderer:$.jqplot.BarRenderer + rendererOptions: + barWidth: 15 + pointLabels: + show: true + axesDefaults: + labelRenderer: $.jqplot.CanvasAxisLabelRenderer + axes: + xaxis: + min: 0 + label: "LRS" + pad: 1.1 + yaxis: + min: 0 + label: "Frequency" + ) + + #process_qtl_results = -> + # qtl_results = js_data.qtl_results + + #display_manhattan_plot = -> + + + + #bars_ordered = process_lrs_array() + #display_permutation_histogram(bars_ordered) + + class Chromosome + constructor: (@name) -> + @max_mb = 0 + @plot_points = [] + + process_point: (mb, lrs) -> + if mb > @max_mb + @max_mb = mb + @plot_points.push([mb, lrs]) + + display_graph: (max_lrs) -> + div_name = 'manhattan_plot_' + @name + console.log("div_name:", div_name) + + #console.log("max_lrs is", max_lrs) + + + x_axis_max = Math.ceil(@max_mb/25) * 25 + x_axis_ticks = [] + x_tick = 0 + while (x_tick <= x_axis_max) + x_axis_ticks.push(x_tick) + x_tick += 25 + + + plot_options = + title: @name + seriesDefaults: + showLine: false + markerRenderer: $.jqplot.MarkerRenderer + markerOptions: + style: "filledCircle" + size: 3 + axesDefaults: + tickRenderer: $.jqplot.CanvasAxisTickRenderer + labelRenderer: $.jqplot.CanvasAxisLabelRenderer + axes: + xaxis: + min: 0 + max: x_axis_max + ticks: x_axis_ticks + tickOptions: + angle: 90 + showGridline: false + formatString: '%d' + label: "Megabases" + + + if @name == "1" + plot_options.axes.yaxis = + min: 0 + max: Math.floor(max_lrs + 0.1 * max_lrs) + tickInterval: 1 + label: "LRS" + tickOptions: + formatString: '%d' + showGridline: false + else + plot_options.axes.yaxis = + show: false + min: 0 + max: Math.floor(max_lrs + 0.1 * max_lrs) + tickInterval: 1 + tickOptions: + formatString: '%d' + showGridline: false + + $.jqplot(div_name, [@plot_points], plot_options) + + class Manhattan_Plot + constructor: -> + @max_lrs = 0 + + @chromosomes = {} + @build_chromosomes() + + @display_graphs() + + build_chromosomes: -> + for result in js_data.qtl_results + #if result.locus.chromosome == '1' + chromosome = result.locus.chromosome + if chromosome not of @chromosomes + @chromosomes[chromosome] = new Chromosome(chromosome) + mb = parseInt(result.locus.mb) + if result.lrs > @max_lrs + @max_lrs = result.lrs + @chromosomes[chromosome].process_point(mb, result.lrs) + + display_graphs: -> + ### Call display_graph for each chromosome ### + + # First get everything in the right order + numbered_keys = [] + extra_keys = [] + for key of @chromosomes + if isNaN(key) + extra_keys.push(key) + else + numbered_keys.push(key) + + numbered_keys.sort(sort_number) + extra_keys.sort() + keys = numbered_keys.concat(extra_keys) + console.log("keys are:", keys) + + for key in keys + this_class = "manhattan_plot_segment" + if key != "1" + this_class += " no_y_axis" + html = """<div id="manhattan_plot_#{ key }" class=#{ this_class }></div>""" + console.log("html is:", html) + $("#manhattan_plots").append(html) + @chromosomes[key].display_graph(@max_lrs) + + $('.jqplot-yaxis').hide() + $('#manhattan_plot_1').find('.jqplot-yaxis').show() + + #$(".jqplot-yaxis").hide() + #$(".jqplot-yaxis-tick").hide() + + + #process_data: -> + # qtl_results = js_data.qtl_results + # #console.log("qtl_results: ", qtl_results) + # @plot_points = [] + # @max_mb = 0 + # for result in qtl_results + # if result.locus.chromosome == '1' + # mb = parseInt(result.locus.mb) + # if mb > @max_mb + # @max_mb = mb + # @plot_points.push([mb, result.lrs]) + + + + new Permutation_Histogram + new Manhattan_Plot
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/show_trait.coffee b/wqflask/wqflask/static/new/javascript/show_trait.coffee index eb87cf04..0f16ac68 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.coffee +++ b/wqflask/wqflask/static/new/javascript/show_trait.coffee @@ -207,7 +207,6 @@ $ -> ##Calculate Correlations Code - on_corr_method_change = -> console.log("in beginning of on_corr_method_change") corr_method = $('select[name=corr_method]').val() diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index ff705ea5..ec93727c 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -1,4 +1,4 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { var Stat_Table_Rows, is_number, __hasProp = {}.hasOwnProperty, diff --git a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee index d0fc869d..3c995441 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee +++ b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee @@ -1,3 +1,6 @@ +# http://stackoverflow.com/a/4215132/1175849 +root = exports ? this + $ -> submit_special = -> # Add submit_special class plus a data-url field to any button @@ -10,9 +13,82 @@ $ -> console.log("url is:", url) $("#trait_data_form").attr("action", url); $("#trait_data_form").submit() - - $(".submit_special").click(submit_special) + update_time_remaining = (percent_complete) -> + now = new Date() + period = now.getTime() - root.start_time + console.log("period is:", period) + if period > 8000 + total_seconds_remaining = (period / percent_complete * (100 - percent_complete))/1000 + minutes_remaining = Math.round(total_seconds_remaining / 60) + #seconds_remaining = Math.round(total_seconds_remaining % 60) + #console.log("seconds_remaining:", seconds_remaining) + if minutes_remaining < 3 + $('#time_remaining').text(Math.round(total_seconds_remaining) + " seconds remaining") + else + $('#time_remaining').text(minutes_remaining + " minutes remaining") + + get_progress = -> + console.log("temp_uuid:", $("#temp_uuid").val()) + temp_uuid = $("#temp_uuid").val() + params = { key:temp_uuid } + params_str = $.param(params) + url = "/get_temp_data?" + params_str + console.log("url:", url) + $.ajax( + type: "GET" + url: url + success: (progress_data) => + percent_complete = progress_data['percent_complete'] + console.log("in get_progress data:", progress_data) + + $('#marker_regression_progress').css("width", percent_complete + "%") + + if root.start_time + unless isNaN(percent_complete) + update_time_remaining(percent_complete) + else + root.start_time = new Date().getTime() + ) + return false + + $('#suggestive').hide() + + $('input[name=display_all]').change(() => + console.log("check") + if $('input[name=display_all]:checked').val() == "False" + $('#suggestive').show() + else + $('#suggestive').hide() + ) + + $("#marker_regression_compute").click(() => + $("#progress_bar_container").modal() + url = "/marker_regression" + form_data = $('#trait_data_form').serialize() + console.log("form_data is:", form_data) + $.ajax( + type: "POST" + url: url + data: form_data + error: (xhr, ajaxOptions, thrownError) => + alert("Sorry, an error occurred") + console.log(xhr) + clearInterval(this.my_timer) + $('#progress_bar_container').modal('hide') + $("body").html("We got an error.") + success: (data) => + clearInterval(this.my_timer) + $('#progress_bar_container').modal('hide') + $("body").html(data) + ) + console.log("settingInterval") + + this.my_timer = setInterval(get_progress, 1000) + return false + ) + + #$(".submit_special").click(submit_special) composite_mapping_fields = -> $(".composite_fields").toggle() @@ -30,4 +106,4 @@ $ -> $("#display_all_lrs").change(-> toggle_enable_disable("#suggestive_lrs") - )
\ No newline at end of file + );
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js index c6766288..329dcdd9 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js +++ b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js @@ -1,8 +1,12 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { + var root; + + root = typeof exports !== "undefined" && exports !== null ? exports : this; $(function() { - var composite_mapping_fields, submit_special, toggle_enable_disable; + var composite_mapping_fields, get_progress, submit_special, toggle_enable_disable, update_time_remaining, + _this = this; submit_special = function() { var url; console.log("In submit_special"); @@ -13,7 +17,87 @@ $("#trait_data_form").attr("action", url); return $("#trait_data_form").submit(); }; - $(".submit_special").click(submit_special); + update_time_remaining = function(percent_complete) { + var minutes_remaining, now, period, total_seconds_remaining; + now = new Date(); + period = now.getTime() - root.start_time; + console.log("period is:", period); + if (period > 8000) { + total_seconds_remaining = (period / percent_complete * (100 - percent_complete)) / 1000; + minutes_remaining = Math.round(total_seconds_remaining / 60); + if (minutes_remaining < 3) { + return $('#time_remaining').text(Math.round(total_seconds_remaining) + " seconds remaining"); + } else { + return $('#time_remaining').text(minutes_remaining + " minutes remaining"); + } + } + }; + get_progress = function() { + var params, params_str, temp_uuid, url, + _this = this; + console.log("temp_uuid:", $("#temp_uuid").val()); + temp_uuid = $("#temp_uuid").val(); + params = { + key: temp_uuid + }; + params_str = $.param(params); + url = "/get_temp_data?" + params_str; + console.log("url:", url); + $.ajax({ + type: "GET", + url: url, + success: function(progress_data) { + var percent_complete; + percent_complete = progress_data['percent_complete']; + console.log("in get_progress data:", progress_data); + $('#marker_regression_progress').css("width", percent_complete + "%"); + if (root.start_time) { + if (!isNaN(percent_complete)) { + return update_time_remaining(percent_complete); + } + } else { + return root.start_time = new Date().getTime(); + } + } + }); + return false; + }; + $('#suggestive').hide(); + $('input[name=display_all]').change(function() { + console.log("check"); + if ($('input[name=display_all]:checked').val() === "False") { + return $('#suggestive').show(); + } else { + return $('#suggestive').hide(); + } + }); + $("#marker_regression_compute").click(function() { + var form_data, url; + $("#progress_bar_container").modal(); + url = "/marker_regression"; + form_data = $('#trait_data_form').serialize(); + console.log("form_data is:", form_data); + $.ajax({ + type: "POST", + url: url, + data: form_data, + error: function(xhr, ajaxOptions, thrownError) { + alert("Sorry, an error occurred"); + console.log(xhr); + clearInterval(_this.my_timer); + $('#progress_bar_container').modal('hide'); + return $("body").html("We got an error."); + }, + success: function(data) { + clearInterval(_this.my_timer); + $('#progress_bar_container').modal('hide'); + return $("body").html(data); + } + }); + console.log("settingInterval"); + _this.my_timer = setInterval(get_progress, 1000); + return false; + }); composite_mapping_fields = function() { return $(".composite_fields").toggle(); }; diff --git a/wqflask/wqflask/static/new/javascript/stats.js b/wqflask/wqflask/static/new/javascript/stats.js index 36e96640..4cca0d13 100644 --- a/wqflask/wqflask/static/new/javascript/stats.js +++ b/wqflask/wqflask/static/new/javascript/stats.js @@ -1,4 +1,4 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { var Stats, bxd_only; diff --git a/wqflask/wqflask/static/new/javascript/validation.js b/wqflask/wqflask/static/new/javascript/validation.js index 06ed196d..2ac477b5 100644 --- a/wqflask/wqflask/static/new/javascript/validation.js +++ b/wqflask/wqflask/static/new/javascript/validation.js @@ -1,4 +1,4 @@ -// Generated by CoffeeScript 1.3.3 +// Generated by CoffeeScript 1.4.0 (function() { $(function() { diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/demo_page.css b/wqflask/wqflask/static/new/packages/DataTables/css/demo_page.css index 89c62bb7..ba5b2a6c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/css/demo_page.css +++ b/wqflask/wqflask/static/new/packages/DataTables/css/demo_page.css @@ -104,4 +104,19 @@ height: 100px; width: 100%; overflow: auto; -}
\ No newline at end of file +} + +#dt_example code { + font-family: Menlo, Monaco, Consolas, "Courier New", monospace; + padding: 2px 4px !important; + white-space: nowrap; + font-size: 0.9em; + + color: #D14; + background-color: #F7F7F9; + + border: 1px solid #E1E1E8; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/demo_table.css b/wqflask/wqflask/static/new/packages/DataTables/css/demo_table.css index f41a0042..12f352da 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/css/demo_table.css +++ b/wqflask/wqflask/static/new/packages/DataTables/css/demo_table.css @@ -201,7 +201,8 @@ table.display td.center { background: url('../images/sort_desc_disabled.png') no-repeat center right; } -th:active { +table.display thead th:active, +table.display thead td:active { outline: none; } diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/demo_table_jui.css b/wqflask/wqflask/static/new/packages/DataTables/css/demo_table_jui.css index de7c8426..a210af51 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/css/demo_table_jui.css +++ b/wqflask/wqflask/static/new/packages/DataTables/css/demo_table_jui.css @@ -82,7 +82,6 @@ div.dataTables_wrapper .ui-widget-header { table.display thead th div.DataTables_sort_wrapper { position: relative; padding-right: 20px; - padding-right: 20px; } table.display thead th div.DataTables_sort_wrapper span { @@ -147,30 +146,6 @@ table.display thead th div.DataTables_sort_wrapper span { text-align: right; } -/* Pagination nested */ -.paginate_disabled_previous, .paginate_enabled_previous, .paginate_disabled_next, .paginate_enabled_next { - height: 19px; - width: 19px; - margin-left: 3px; - float: left; -} - -.paginate_disabled_previous { - background-image: url('../images/back_disabled.jpg'); -} - -.paginate_enabled_previous { - background-image: url('../images/back_enabled.jpg'); -} - -.paginate_disabled_next { - background-image: url('../images/forward_disabled.jpg'); -} - -.paginate_enabled_next { - background-image: url('../images/forward_enabled.jpg'); -} - /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css index 83df98ea..7da7faec 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css +++ b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css @@ -201,7 +201,8 @@ table.dataTable tr.even td.sorting_3 { background-color: #F9F9FF; } .sorting_asc_disabled { background: url('../images/sort_asc_disabled.png') no-repeat center right; } .sorting_desc_disabled { background: url('../images/sort_desc_disabled.png') no-repeat center right; } -table.dataTable th:active { +table.dataTable thead th:active, +table.dataTable thead td:active { outline: none; } diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables_themeroller.css b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables_themeroller.css index 55661c6d..cf1d4ed7 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables_themeroller.css +++ b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables_themeroller.css @@ -216,7 +216,6 @@ table.dataTable tr.even td.sorting_3 { background-color: #F9F9FF; } table.dataTable thead th div.DataTables_sort_wrapper { position: relative; padding-right: 20px; - padding-right: 20px; } table.dataTable thead th div.DataTables_sort_wrapper span { diff --git a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js index ae5d1750..1d8a220b 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js +++ b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js @@ -1,7 +1,7 @@ /** * @summary DataTables * @description Paginate, search and sort HTML tables - * @version 1.9.2 + * @version 1.9.4 * @file jquery.dataTables.js * @author Allan Jardine (www.sprymedia.co.uk) * @contact www.sprymedia.co.uk/contact @@ -21,9 +21,28 @@ */ /*jslint evil: true, undef: true, browser: true */ -/*globals $, jQuery,_fnExternApiFunc,_fnInitialise,_fnInitComplete,_fnLanguageCompat,_fnAddColumn,_fnColumnOptions,_fnAddData,_fnCreateTr,_fnGatherData,_fnBuildHead,_fnDrawHead,_fnDraw,_fnReDraw,_fnAjaxUpdate,_fnAjaxParameters,_fnAjaxUpdateDraw,_fnServerParams,_fnAddOptionsHtml,_fnFeatureHtmlTable,_fnScrollDraw,_fnAdjustColumnSizing,_fnFeatureHtmlFilter,_fnFilterComplete,_fnFilterCustom,_fnFilterColumn,_fnFilter,_fnBuildSearchArray,_fnBuildSearchRow,_fnFilterCreateSearch,_fnDataToSearch,_fnSort,_fnSortAttachListener,_fnSortingClasses,_fnFeatureHtmlPaginate,_fnPageChange,_fnFeatureHtmlInfo,_fnUpdateInfo,_fnFeatureHtmlLength,_fnFeatureHtmlProcessing,_fnProcessingDisplay,_fnVisibleToColumnIndex,_fnColumnIndexToVisible,_fnNodeToDataIndex,_fnVisbleColumns,_fnCalculateEnd,_fnConvertToWidth,_fnCalculateColumnWidths,_fnScrollingWidthAdjust,_fnGetWidestNode,_fnGetMaxLenString,_fnStringToCss,_fnDetectType,_fnSettingsFromNode,_fnGetDataMaster,_fnGetTrNodes,_fnGetTdNodes,_fnEscapeRegex,_fnDeleteIndex,_fnReOrderIndex,_fnColumnOrdering,_fnLog,_fnClearTable,_fnSaveState,_fnLoadState,_fnCreateCookie,_fnReadCookie,_fnDetectHeader,_fnGetUniqueThs,_fnScrollBarWidth,_fnApplyToChildren,_fnMap,_fnGetRowData,_fnGetCellData,_fnSetCellData,_fnGetObjectDataFn,_fnSetObjectDataFn,_fnApplyColumnDefs,_fnBindAction,_fnCallbackReg,_fnCallbackFire,_fnJsonString,_fnRender,_fnNodeToColumnIndex,_fnInfoMacros*/ +/*globals $, jQuery,define,_fnExternApiFunc,_fnInitialise,_fnInitComplete,_fnLanguageCompat,_fnAddColumn,_fnColumnOptions,_fnAddData,_fnCreateTr,_fnGatherData,_fnBuildHead,_fnDrawHead,_fnDraw,_fnReDraw,_fnAjaxUpdate,_fnAjaxParameters,_fnAjaxUpdateDraw,_fnServerParams,_fnAddOptionsHtml,_fnFeatureHtmlTable,_fnScrollDraw,_fnAdjustColumnSizing,_fnFeatureHtmlFilter,_fnFilterComplete,_fnFilterCustom,_fnFilterColumn,_fnFilter,_fnBuildSearchArray,_fnBuildSearchRow,_fnFilterCreateSearch,_fnDataToSearch,_fnSort,_fnSortAttachListener,_fnSortingClasses,_fnFeatureHtmlPaginate,_fnPageChange,_fnFeatureHtmlInfo,_fnUpdateInfo,_fnFeatureHtmlLength,_fnFeatureHtmlProcessing,_fnProcessingDisplay,_fnVisibleToColumnIndex,_fnColumnIndexToVisible,_fnNodeToDataIndex,_fnVisbleColumns,_fnCalculateEnd,_fnConvertToWidth,_fnCalculateColumnWidths,_fnScrollingWidthAdjust,_fnGetWidestNode,_fnGetMaxLenString,_fnStringToCss,_fnDetectType,_fnSettingsFromNode,_fnGetDataMaster,_fnGetTrNodes,_fnGetTdNodes,_fnEscapeRegex,_fnDeleteIndex,_fnReOrderIndex,_fnColumnOrdering,_fnLog,_fnClearTable,_fnSaveState,_fnLoadState,_fnCreateCookie,_fnReadCookie,_fnDetectHeader,_fnGetUniqueThs,_fnScrollBarWidth,_fnApplyToChildren,_fnMap,_fnGetRowData,_fnGetCellData,_fnSetCellData,_fnGetObjectDataFn,_fnSetObjectDataFn,_fnApplyColumnDefs,_fnBindAction,_fnCallbackReg,_fnCallbackFire,_fnJsonString,_fnRender,_fnNodeToColumnIndex,_fnInfoMacros,_fnBrowserDetect,_fnGetColumns*/ -(/** @lends <global> */function($, window, document, undefined) { +(/** @lends <global> */function( window, document, undefined ) { + +(function( factory ) { + "use strict"; + + // Define as an AMD module if possible + if ( typeof define === 'function' && define.amd ) + { + define( ['jquery'], factory ); + } + /* Define using browser globals otherwise + * Prevent multiple instantiations if the script is loaded twice + */ + else if ( jQuery && !jQuery.fn.dataTable ) + { + factory( jQuery ); + } +} +(/** @lends <global> */function( $ ) { + "use strict"; /** * DataTables is a plug-in for the jQuery Javascript library. It is a * highly flexible tool, based upon the foundations of progressive @@ -76,7 +95,7 @@ "nTh": nTh ? nTh : document.createElement('th'), "sTitle": oDefaults.sTitle ? oDefaults.sTitle : nTh ? nTh.innerHTML : '', "aDataSort": oDefaults.aDataSort ? oDefaults.aDataSort : [iCol], - "mDataProp": oDefaults.mDataProp ? oDefaults.oDefaults : iCol + "mData": oDefaults.mData ? oDefaults.oDefaults : iCol } ); oSettings.aoColumns.push( oCol ); @@ -115,7 +134,7 @@ * Apply options for a column * @param {object} oSettings dataTables settings object * @param {int} iCol column index to consider - * @param {object} oOptions object with sType, bVisible and bSearchable + * @param {object} oOptions object with sType, bVisible and bSearchable etc * @memberof DataTable#oApi */ function _fnColumnOptions( oSettings, iCol, oOptions ) @@ -125,6 +144,12 @@ /* User specified column options */ if ( oOptions !== undefined && oOptions !== null ) { + /* Backwards compatibility for mDataProp */ + if ( oOptions.mDataProp && !oOptions.mData ) + { + oOptions.mData = oOptions.mDataProp; + } + if ( oOptions.sType !== undefined ) { oCol.sType = oOptions.sType; @@ -145,8 +170,19 @@ } /* Cache the data get and set functions for speed */ - oCol.fnGetData = _fnGetObjectDataFn( oCol.mDataProp ); - oCol.fnSetData = _fnSetObjectDataFn( oCol.mDataProp ); + var mRender = oCol.mRender ? _fnGetObjectDataFn( oCol.mRender ) : null; + var mData = _fnGetObjectDataFn( oCol.mData ); + + oCol.fnGetData = function (oData, sSpecific) { + var innerData = mData( oData, sSpecific ); + + if ( oCol.mRender && (sSpecific && sSpecific !== '') ) + { + return mRender( innerData, sSpecific, oData ); + } + return innerData; + }; + oCol.fnSetData = _fnSetObjectDataFn( oCol.mData ); /* Feature sorting overrides column specific when off */ if ( !oSettings.oFeatures.bSort ) @@ -161,11 +197,10 @@ oCol.sSortingClass = oSettings.oClasses.sSortableNone; oCol.sSortingClassJUI = ""; } - else if ( oCol.bSortable || - ($.inArray('asc', oCol.asSorting) == -1 && $.inArray('desc', oCol.asSorting) == -1) ) + else if ( $.inArray('asc', oCol.asSorting) == -1 && $.inArray('desc', oCol.asSorting) == -1 ) { - oCol.sSortingClass = oSettings.oClasses.sSortable; - oCol.sSortingClassJUI = oSettings.oClasses.sSortJUI; + oCol.sSortingClass = oSettings.oClasses.sSortable; + oCol.sSortingClassJUI = oSettings.oClasses.sSortJUI; } else if ( $.inArray('asc', oCol.asSorting) != -1 && $.inArray('desc', oCol.asSorting) == -1 ) { @@ -188,7 +223,7 @@ */ function _fnAdjustColumnSizing ( oSettings ) { - /* Not interested in doing column width calculation if autowidth is disabled */ + /* Not interested in doing column width calculation if auto-width is disabled */ if ( oSettings.oFeatures.bAutoWidth === false ) { return false; @@ -212,22 +247,11 @@ */ function _fnVisibleToColumnIndex( oSettings, iMatch ) { - var iColumn = -1; - - for ( var i=0 ; i<oSettings.aoColumns.length ; i++ ) - { - if ( oSettings.aoColumns[i].bVisible === true ) - { - iColumn++; - } - - if ( iColumn == iMatch ) - { - return i; - } - } - - return null; + var aiVis = _fnGetColumns( oSettings, 'bVisible' ); + + return typeof aiVis[iMatch] === 'number' ? + aiVis[iMatch] : + null; } @@ -241,41 +265,44 @@ */ function _fnColumnIndexToVisible( oSettings, iMatch ) { - var iVisible = -1; - for ( var i=0 ; i<oSettings.aoColumns.length ; i++ ) - { - if ( oSettings.aoColumns[i].bVisible === true ) - { - iVisible++; - } - - if ( i == iMatch ) - { - return oSettings.aoColumns[i].bVisible === true ? iVisible : null; - } - } - - return null; + var aiVis = _fnGetColumns( oSettings, 'bVisible' ); + var iPos = $.inArray( iMatch, aiVis ); + + return iPos !== -1 ? iPos : null; } /** * Get the number of visible columns + * @param {object} oSettings dataTables settings object * @returns {int} i the number of visible columns - * @param {object} oS dataTables settings object * @memberof DataTable#oApi */ - function _fnVisbleColumns( oS ) + function _fnVisbleColumns( oSettings ) { - var iVis = 0; - for ( var i=0 ; i<oS.aoColumns.length ; i++ ) - { - if ( oS.aoColumns[i].bVisible === true ) - { - iVis++; + return _fnGetColumns( oSettings, 'bVisible' ).length; + } + + + /** + * Get an array of column indexes that match a given property + * @param {object} oSettings dataTables settings object + * @param {string} sParam Parameter in aoColumns to look for - typically + * bVisible or bSearchable + * @returns {array} Array of indexes with matched properties + * @memberof DataTable#oApi + */ + function _fnGetColumns( oSettings, sParam ) + { + var a = []; + + $.map( oSettings.aoColumns, function(val, i) { + if ( val[sParam] ) { + a.push( i ); } - } - return iVis; + } ); + + return a; } @@ -423,8 +450,6 @@ } } - - /** * Add a data array to the table, creating DOM node etc. This is the parallel to * _fnGatherData, but for adding rows from a Javascript source, rather than a @@ -455,8 +480,8 @@ { oCol = oSettings.aoColumns[i]; - /* Use rendered data for filtering/sorting */ - if ( typeof oCol.fnRender === 'function' && oCol.bUseRendered && oCol.mDataProp !== null ) + /* Use rendered data for filtering / sorting */ + if ( typeof oCol.fnRender === 'function' && oCol.bUseRendered && oCol.mData !== null ) { _fnSetCellData( oSettings, iRow, i, _fnRender(oSettings, iRow, i) ); } @@ -489,7 +514,7 @@ /* Add to the display array */ oSettings.aiDisplayMaster.push( iRow ); - /* Create the DOM imformation */ + /* Create the DOM information */ if ( !oSettings.oFeatures.bDeferRender ) { _fnCreateTr( oSettings, iRow ); @@ -507,7 +532,7 @@ function _fnGatherData( oSettings ) { var iLoop, i, iLen, j, jLen, jInner, - nTds, nTrs, nTd, aLocalData, iThisIndex, + nTds, nTrs, nTd, nTr, aLocalData, iThisIndex, iRow, iRows, iColumn, iColumns, sNodeName, oCol, oData; @@ -518,31 +543,32 @@ */ if ( oSettings.bDeferLoading || oSettings.sAjaxSource === null ) { - nTrs = oSettings.nTBody.childNodes; - for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) + nTr = oSettings.nTBody.firstChild; + while ( nTr ) { - if ( nTrs[i].nodeName.toUpperCase() == "TR" ) + if ( nTr.nodeName.toUpperCase() == "TR" ) { iThisIndex = oSettings.aoData.length; - nTrs[i]._DT_RowIndex = iThisIndex; + nTr._DT_RowIndex = iThisIndex; oSettings.aoData.push( $.extend( true, {}, DataTable.models.oRow, { - "nTr": nTrs[i] + "nTr": nTr } ) ); - + oSettings.aiDisplayMaster.push( iThisIndex ); - nTds = nTrs[i].childNodes; + nTd = nTr.firstChild; jInner = 0; - - for ( j=0, jLen=nTds.length ; j<jLen ; j++ ) + while ( nTd ) { - sNodeName = nTds[j].nodeName.toUpperCase(); + sNodeName = nTd.nodeName.toUpperCase(); if ( sNodeName == "TD" || sNodeName == "TH" ) { - _fnSetCellData( oSettings, iThisIndex, jInner, $.trim(nTds[j].innerHTML) ); + _fnSetCellData( oSettings, iThisIndex, jInner, $.trim(nTd.innerHTML) ); jInner++; } + nTd = nTd.nextSibling; } } + nTr = nTr.nextSibling; } } @@ -554,14 +580,15 @@ nTds = []; for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { - for ( j=0, jLen=nTrs[i].childNodes.length ; j<jLen ; j++ ) + nTd = nTrs[i].firstChild; + while ( nTd ) { - nTd = nTrs[i].childNodes[j]; sNodeName = nTd.nodeName.toUpperCase(); if ( sNodeName == "TD" || sNodeName == "TH" ) { nTds.push( nTd ); } + nTd = nTd.nextSibling; } } @@ -611,8 +638,16 @@ } } - if ( typeof oCol.mDataProp === 'function' ) + if ( oCol.mRender ) + { + // mRender has been defined, so we need to get the value and set it + nCell.innerHTML = _fnGetCellData( oSettings, iRow, iColumn, 'display' ); + } + else if ( oCol.mData !== iColumn ) { + // If mData is not the same as the column number, then we need to + // get the dev set value. If it is the column, no point in wasting + // time setting the value that is already there! nCell.innerHTML = _fnGetCellData( oSettings, iRow, iColumn, 'display' ); } @@ -623,7 +658,7 @@ nCell.innerHTML = sRendered; if ( oCol.bUseRendered ) { - /* Use the rendered data for filtering/sorting */ + /* Use the rendered data for filtering / sorting */ _fnSetCellData( oSettings, iRow, iColumn, sRendered ); } } @@ -634,7 +669,7 @@ nCell.className += ' '+oCol.sClass; } - /* Column visability */ + /* Column visibility */ if ( !bVisible ) { oData._anHidden[iColumn] = nCell; @@ -708,15 +743,16 @@ * @param {object} oSettings dataTables settings object * @param {int} iRow aoData row id * @param {string} sSpecific data get type ('type' 'filter' 'sort') + * @param {array} aiColumns Array of column indexes to get data from * @returns {array} Data array * @memberof DataTable#oApi */ - function _fnGetRowData( oSettings, iRow, sSpecific ) + function _fnGetRowData( oSettings, iRow, sSpecific, aiColumns ) { var out = []; - for ( var i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) + for ( var i=0, iLen=aiColumns.length ; i<iLen ; i++ ) { - out.push( _fnGetCellData( oSettings, iRow, i, sSpecific ) ); + out.push( _fnGetCellData( oSettings, iRow, aiColumns[i], sSpecific ) ); } return out; } @@ -742,7 +778,7 @@ if ( oSettings.iDrawError != oSettings.iDraw && oCol.sDefaultContent === null ) { _fnLog( oSettings, 0, "Requested unknown parameter "+ - (typeof oCol.mDataProp=='function' ? '{mDataprop function}' : "'"+oCol.mDataProp+"'")+ + (typeof oCol.mData=='function' ? '{mData function}' : "'"+oCol.mData+"'")+ " from the data source for row "+iRow ); oSettings.iDrawError = oSettings.iDraw; } @@ -785,6 +821,9 @@ } + // Private variable that is used to match array syntax in the data property object + var __reArray = /\[.*?\]$/; + /** * Return a function that can be used to get data from a source object, taking * into account the ability to use nested objects as a source @@ -803,30 +842,71 @@ } else if ( typeof mSource === 'function' ) { - return function (data, type) { - return mSource( data, type ); + return function (data, type, extra) { + return mSource( data, type, extra ); }; } - else if ( typeof mSource === 'string' && mSource.indexOf('.') != -1 ) + else if ( typeof mSource === 'string' && (mSource.indexOf('.') !== -1 || mSource.indexOf('[') !== -1) ) { /* If there is a . in the source string then the data source is in a * nested object so we loop over the data for each level to get the next - * level down. On each loop we test for undefined, and if found immediatly + * level down. On each loop we test for undefined, and if found immediately * return. This allows entire objects to be missing and sDefaultContent to * be used if defined, rather than throwing an error */ - var a = mSource.split('.'); - return function (data, type) { - for ( var i=0, iLen=a.length ; i<iLen ; i++ ) + var fetchData = function (data, type, src) { + var a = src.split('.'); + var arrayNotation, out, innerSrc; + + if ( src !== "" ) { - data = data[ a[i] ]; - if ( data === undefined ) + for ( var i=0, iLen=a.length ; i<iLen ; i++ ) { - return undefined; + // Check if we are dealing with an array notation request + arrayNotation = a[i].match(__reArray); + + if ( arrayNotation ) { + a[i] = a[i].replace(__reArray, ''); + + // Condition allows simply [] to be passed in + if ( a[i] !== "" ) { + data = data[ a[i] ]; + } + out = []; + + // Get the remainder of the nested object to get + a.splice( 0, i+1 ); + innerSrc = a.join('.'); + + // Traverse each entry in the array getting the properties requested + for ( var j=0, jLen=data.length ; j<jLen ; j++ ) { + out.push( fetchData( data[j], type, innerSrc ) ); + } + + // If a string is given in between the array notation indicators, that + // is used to join the strings together, otherwise an array is returned + var join = arrayNotation[0].substring(1, arrayNotation[0].length-1); + data = (join==="") ? out : out.join(join); + + // The inner call to fetchData has already traversed through the remainder + // of the source requested, so we exit from the loop + break; + } + + if ( data === null || data[ a[i] ] === undefined ) + { + return undefined; + } + data = data[ a[i] ]; } } + return data; }; + + return function (data, type) { + return fetchData( data, type, mSource ); + }; } else { @@ -858,22 +938,57 @@ mSource( data, 'set', val ); }; } - else if ( typeof mSource === 'string' && mSource.indexOf('.') != -1 ) + else if ( typeof mSource === 'string' && (mSource.indexOf('.') !== -1 || mSource.indexOf('[') !== -1) ) { - /* Like the get, we need to get data from a nested object. */ - var a = mSource.split('.'); - return function (data, val) { + /* Like the get, we need to get data from a nested object */ + var setData = function (data, val, src) { + var a = src.split('.'), b; + var arrayNotation, o, innerSrc; + for ( var i=0, iLen=a.length-1 ; i<iLen ; i++ ) { + // Check if we are dealing with an array notation request + arrayNotation = a[i].match(__reArray); + + if ( arrayNotation ) + { + a[i] = a[i].replace(__reArray, ''); + data[ a[i] ] = []; + + // Get the remainder of the nested object to set so we can recurse + b = a.slice(); + b.splice( 0, i+1 ); + innerSrc = b.join('.'); + + // Traverse each entry in the array setting the properties requested + for ( var j=0, jLen=val.length ; j<jLen ; j++ ) + { + o = {}; + setData( o, val[j], innerSrc ); + data[ a[i] ].push( o ); + } + + // The inner call to setData has already traversed through the remainder + // of the source and has set the data, thus we can exit here + return; + } + // If the nested object doesn't currently exist - since we are // trying to set the value - create it - if ( data[ a[i] ] === undefined ) + if ( data[ a[i] ] === null || data[ a[i] ] === undefined ) { data[ a[i] ] = {}; } data = data[ a[i] ]; } - data[ a[a.length-1] ] = val; + + // If array notation is used, we just want to strip it and use the property name + // and assign the value. If it isn't used, then we get the result we want anyway + data[ a[a.length-1].replace(__reArray, '') ] = val; + }; + + return function (data, val) { + return setData( data, val, mSource ); }; } else @@ -966,10 +1081,9 @@ "iDataColumn": iCol, "oSettings": oSettings, "aData": oSettings.aoData[iRow]._aData, - "mDataProp": oCol.mDataProp + "mDataProp": oCol.mData }, _fnGetCellData(oSettings, iRow, iCol, 'display') ); } - /** * Create a new TR element (and it's TD children) for a row * @param {object} oSettings dataTables settings object @@ -998,7 +1112,7 @@ if ( oData._aData.DT_RowClass ) { - $(oData.nTr).addClass( oData._aData.DT_RowClass ); + oData.nTr.className = oData._aData.DT_RowClass; } /* Process each column */ @@ -1010,7 +1124,7 @@ /* Render if needed - if bUseRendered is true then we already have the rendered * value in the data source - so can just use that */ - nTd.innerHTML = (typeof oCol.fnRender === 'function' && (!oCol.bUseRendered || oCol.mDataProp === null)) ? + nTd.innerHTML = (typeof oCol.fnRender === 'function' && (!oCol.bUseRendered || oCol.mData === null)) ? _fnRender( oSettings, iRow, i ) : _fnGetCellData( oSettings, iRow, i, 'display' ); @@ -1051,7 +1165,7 @@ function _fnBuildHead( oSettings ) { var i, nTh, iLen, j, jLen; - var iThs = oSettings.nTHead.getElementsByTagName('th').length; + var iThs = $('th, td', oSettings.nTHead).length; var iCorrector = 0; var jqChildren; @@ -1350,7 +1464,7 @@ } } - /* Row callback functions - might want to manipule the row */ + /* Row callback functions - might want to manipulate the row */ _fnCallbackFire( oSettings, 'aoRowCallback', null, [nRow, oSettings.aoData[ oSettings.aiDisplay[j] ]._aData, iRowCount, j] ); @@ -1662,10 +1776,12 @@ function _fnDetectHeader ( aLayout, nThead ) { var nTrs = $(nThead).children('tr'); - var nCell; - var i, j, k, l, iLen, jLen, iColShifted; + var nTr, nCell; + var i, k, l, iLen, jLen, iColShifted, iColumn, iColspan, iRowspan; + var bUnique; var fnShiftCol = function ( a, i, j ) { - while ( a[i][j] ) { + var k = a[i]; + while ( k[j] ) { j++; } return j; @@ -1682,19 +1798,18 @@ /* Calculate a layout array */ for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { - var iColumn = 0; + nTr = nTrs[i]; + iColumn = 0; /* For every cell in the row... */ - for ( j=0, jLen=nTrs[i].childNodes.length ; j<jLen ; j++ ) - { - nCell = nTrs[i].childNodes[j]; - + nCell = nTr.firstChild; + while ( nCell ) { if ( nCell.nodeName.toUpperCase() == "TD" || nCell.nodeName.toUpperCase() == "TH" ) { /* Get the col and rowspan attributes from the DOM and sanitise them */ - var iColspan = nCell.getAttribute('colspan') * 1; - var iRowspan = nCell.getAttribute('rowspan') * 1; + iColspan = nCell.getAttribute('colspan') * 1; + iRowspan = nCell.getAttribute('rowspan') * 1; iColspan = (!iColspan || iColspan===0 || iColspan===1) ? 1 : iColspan; iRowspan = (!iRowspan || iRowspan===0 || iRowspan===1) ? 1 : iRowspan; @@ -1703,6 +1818,9 @@ */ iColShifted = fnShiftCol( aLayout, i, iColumn ); + /* Cache calculation for unique columns */ + bUnique = iColspan === 1 ? true : false; + /* If there is col / rowspan, copy the information into the layout grid */ for ( l=0 ; l<iColspan ; l++ ) { @@ -1710,12 +1828,13 @@ { aLayout[i+k][iColShifted+l] = { "cell": nCell, - "unique": iColspan == 1 ? true : false + "unique": bUnique }; - aLayout[i+k].nTr = nTrs[i]; + aLayout[i+k].nTr = nTr; } } } + nCell = nCell.nextSibling; } } } @@ -1726,7 +1845,7 @@ * @param {object} oSettings dataTables settings object * @param {node} nHeader automatically detect the layout from this node - optional * @param {array} aLayout thead/tfoot layout from _fnDetectHeader - optional - * @returns array {node} aReturn list of unique ths + * @returns array {node} aReturn list of unique th's * @memberof DataTable#oApi */ function _fnGetUniqueThs ( oSettings, nHeader, aLayout ) @@ -1809,7 +1928,7 @@ for ( i=0 ; i<iColumns ; i++ ) { - mDataProp = oSettings.aoColumns[i].mDataProp; + mDataProp = oSettings.aoColumns[i].mData; aoData.push( { "name": "mDataProp_"+i, "value": typeof(mDataProp)==="function" ? 'function' : mDataProp } ); } @@ -1859,7 +1978,7 @@ /** - * Add Ajax parameters from plugins + * Add Ajax parameters from plug-ins * @param {object} oSettings dataTables settings object * @param array {objects} aoData name/value pairs to send to the server * @memberof DataTable#oApi @@ -1886,7 +2005,7 @@ if ( json.sEcho !== undefined ) { /* Protect against old returns over-writing a new one. Possible when you get - * very fast interaction, and later queires are completed much faster + * very fast interaction, and later queries are completed much faster */ if ( json.sEcho*1 < oSettings.iDraw ) { @@ -2077,15 +2196,22 @@ function _fnFilterCustom( oSettings ) { var afnFilters = DataTable.ext.afnFiltering; + var aiFilterColumns = _fnGetColumns( oSettings, 'bSearchable' ); + for ( var i=0, iLen=afnFilters.length ; i<iLen ; i++ ) { var iCorrector = 0; for ( var j=0, jLen=oSettings.aiDisplay.length ; j<jLen ; j++ ) { var iDisIndex = oSettings.aiDisplay[j-iCorrector]; + var bTest = afnFilters[i]( + oSettings, + _fnGetRowData( oSettings, iDisIndex, 'filter', aiFilterColumns ), + iDisIndex + ); /* Check if we should use this row based on the filtering function */ - if ( !afnFilters[i]( oSettings, _fnGetRowData( oSettings, iDisIndex, 'filter' ), iDisIndex ) ) + if ( !bTest ) { oSettings.aiDisplay.splice( j-iCorrector, 1 ); iCorrector++; @@ -2224,15 +2350,19 @@ if ( !oSettings.oFeatures.bServerSide ) { /* Clear out the old data */ - oSettings.asDataSearch.splice( 0, oSettings.asDataSearch.length ); - - var aArray = (iMaster && iMaster===1) ? - oSettings.aiDisplayMaster : oSettings.aiDisplay; + oSettings.asDataSearch = []; + + var aiFilterColumns = _fnGetColumns( oSettings, 'bSearchable' ); + var aiIndex = (iMaster===1) ? + oSettings.aiDisplayMaster : + oSettings.aiDisplay; - for ( var i=0, iLen=aArray.length ; i<iLen ; i++ ) + for ( var i=0, iLen=aiIndex.length ; i<iLen ; i++ ) { - oSettings.asDataSearch[i] = _fnBuildSearchRow( oSettings, - _fnGetRowData( oSettings, aArray[i], 'filter' ) ); + oSettings.asDataSearch[i] = _fnBuildSearchRow( + oSettings, + _fnGetRowData( oSettings, aiIndex[i], 'filter', aiFilterColumns ) + ); } } } @@ -2246,33 +2376,16 @@ */ function _fnBuildSearchRow( oSettings, aData ) { - var sSearch = ''; - if ( oSettings.__nTmpFilter === undefined ) - { - oSettings.__nTmpFilter = document.createElement('div'); - } - var nTmp = oSettings.__nTmpFilter; - - for ( var j=0, jLen=oSettings.aoColumns.length ; j<jLen ; j++ ) - { - if ( oSettings.aoColumns[j].bSearchable ) - { - var sData = aData[j]; - sSearch += _fnDataToSearch( sData, oSettings.aoColumns[j].sType )+' '; - } - } + var sSearch = aData.join(' '); /* If it looks like there is an HTML entity in the string, attempt to decode it */ if ( sSearch.indexOf('&') !== -1 ) { - nTmp.innerHTML = sSearch; - sSearch = nTmp.textContent ? nTmp.textContent : nTmp.innerText; - - /* IE and Opera appear to put an newline where there is a <br> tag - remove it */ - sSearch = sSearch.replace(/\n/g," ").replace(/\r/g,""); + sSearch = $('<div>').html(sSearch).text(); } - return sSearch; + // Strip newline characters + return sSearch.replace( /[\n\r]/g, " " ); } /** @@ -2280,7 +2393,7 @@ * @param {string} sSearch string to search for * @param {bool} bRegex treat as a regular expression or not * @param {bool} bSmart perform smart filtering or not - * @param {bool} bCaseInsensitive Do case insenstive matching or not + * @param {bool} bCaseInsensitive Do case insensitive matching or not * @returns {RegExp} constructed object * @memberof DataTable#oApi */ @@ -2335,7 +2448,7 @@ /** - * scape a string stuch that it can be used in a regular expression + * scape a string such that it can be used in a regular expression * @param {string} sVal string to escape * @returns {string} escaped string * @memberof DataTable#oApi @@ -2348,7 +2461,6 @@ } - /** * Generate the node required for the info display * @param {object} oSettings dataTables settings object @@ -2399,25 +2511,20 @@ iTotal = oSettings.fnRecordsDisplay(), sOut; - if ( iTotal === 0 && iTotal == iMax ) + if ( iTotal === 0 ) { /* Empty record set */ sOut = oLang.sInfoEmpty; } - else if ( iTotal === 0 ) - { - /* Empty record set after filtering */ - sOut = oLang.sInfoEmpty +' '+ oLang.sInfoFiltered; - } - else if ( iTotal == iMax ) - { + else { /* Normal record set */ sOut = oLang.sInfo; } - else + + if ( iTotal != iMax ) { /* Record set after filtering */ - sOut = oLang.sInfo +' '+ oLang.sInfoFiltered; + sOut += ' ' + oLang.sInfoFiltered; } // Convert the macros @@ -2458,10 +2565,10 @@ } return str. - replace('_START_', sStart). - replace('_END_', sEnd). - replace('_TOTAL_', sTotal). - replace('_MAX_', sMax); + replace(/_START_/g, sStart). + replace(/_END_/g, sEnd). + replace(/_TOTAL_/g, sTotal). + replace(/_MAX_/g, sMax); } @@ -2712,7 +2819,7 @@ /** - * Rcalculate the end point based on the start point + * Recalculate the end point based on the start point * @param {object} oSettings dataTables settings object * @memberof DataTable#oApi */ @@ -2816,7 +2923,7 @@ oSettings._iDisplayStart - oSettings._iDisplayLength : 0; - /* Correct for underrun */ + /* Correct for under-run */ if ( oSettings._iDisplayStart < 0 ) { oSettings._iDisplayStart = 0; @@ -2902,8 +3009,6 @@ $(oSettings.oInstance).trigger('processing', [oSettings, bShow]); } - - /** * Add any control elements for the table - specifically scrolling * @param {object} oSettings dataTables settings object @@ -3012,7 +3117,7 @@ /* * Sizing */ - /* When xscrolling add the width and a scroller to move the header with the body */ + /* When x-scrolling add the width and a scroller to move the header with the body */ if ( oSettings.oScroll.sX !== "" ) { nScrollHead.style.width = _fnStringToCss( oSettings.oScroll.sX ); @@ -3095,10 +3200,18 @@ nScrollBody = o.nTable.parentNode, i, iLen, j, jLen, anHeadToSize, anHeadSizers, anFootSizers, anFootToSize, oStyle, iVis, nTheadSize, nTfootSize, - iWidth, aApplied=[], iSanityWidth, + iWidth, aApplied=[], aAppliedFooter=[], iSanityWidth, nScrollFootInner = (o.nTFoot !== null) ? o.nScrollFoot.getElementsByTagName('div')[0] : null, nScrollFootTable = (o.nTFoot !== null) ? nScrollFootInner.getElementsByTagName('table')[0] : null, - ie67 = $.browser.msie && $.browser.version <= 7; + ie67 = o.oBrowser.bScrollOversize, + zeroOut = function(nSizer) { + oStyle = nSizer.style; + oStyle.paddingTop = "0"; + oStyle.paddingBottom = "0"; + oStyle.borderTopWidth = "0"; + oStyle.borderBottomWidth = "0"; + oStyle.height = 0; + }; /* * 1. Re-create the table inside the scrolling div @@ -3110,11 +3223,15 @@ /* Clone the current header and footer elements and then place it into the inner table */ nTheadSize = $(o.nTHead).clone()[0]; o.nTable.insertBefore( nTheadSize, o.nTable.childNodes[0] ); + anHeadToSize = o.nTHead.getElementsByTagName('tr'); + anHeadSizers = nTheadSize.getElementsByTagName('tr'); if ( o.nTFoot !== null ) { nTfootSize = $(o.nTFoot).clone()[0]; o.nTable.insertBefore( nTfootSize, o.nTable.childNodes[1] ); + anFootToSize = o.nTFoot.getElementsByTagName('tr'); + anFootSizers = nTfootSize.getElementsByTagName('tr'); } /* @@ -3123,7 +3240,7 @@ /* Remove old sizing and apply the calculated column widths * Get the unique column headers in the newly created (cloned) header. We want to apply the - * calclated sizes to this header + * calculated sizes to this header */ if ( o.oScroll.sX === "" ) { @@ -3142,7 +3259,7 @@ { _fnApplyToChildren( function(n) { n.style.width = ""; - }, nTfootSize.getElementsByTagName('tr') ); + }, anFootSizers ); } // If scroll collapse is enabled, when we put the headers back into the body for sizing, we @@ -3204,41 +3321,38 @@ /* We want the hidden header to have zero height, so remove padding and borders. Then * set the width based on the real headers */ - anHeadToSize = o.nTHead.getElementsByTagName('tr'); - anHeadSizers = nTheadSize.getElementsByTagName('tr'); - _fnApplyToChildren( function(nSizer, nToSize) { - oStyle = nSizer.style; - oStyle.paddingTop = "0"; - oStyle.paddingBottom = "0"; - oStyle.borderTopWidth = "0"; - oStyle.borderBottomWidth = "0"; - oStyle.height = 0; - - iWidth = $(nSizer).width(); - nToSize.style.width = _fnStringToCss( iWidth ); - aApplied.push( iWidth ); - }, anHeadSizers, anHeadToSize ); + // Apply all styles in one pass. Invalidates layout only once because we don't read any + // DOM properties. + _fnApplyToChildren( zeroOut, anHeadSizers ); + + // Read all widths in next pass. Forces layout only once because we do not change + // any DOM properties. + _fnApplyToChildren( function(nSizer) { + aApplied.push( _fnStringToCss( $(nSizer).width() ) ); + }, anHeadSizers ); + + // Apply all widths in final pass. Invalidates layout only once because we do not + // read any DOM properties. + _fnApplyToChildren( function(nToSize, i) { + nToSize.style.width = aApplied[i]; + }, anHeadToSize ); + $(anHeadSizers).height(0); + /* Same again with the footer if we have one */ if ( o.nTFoot !== null ) { - /* Clone the current footer and then place it into the body table as a "hidden header" */ - anFootSizers = nTfootSize.getElementsByTagName('tr'); - anFootToSize = o.nTFoot.getElementsByTagName('tr'); - - _fnApplyToChildren( function(nSizer, nToSize) { - oStyle = nSizer.style; - oStyle.paddingTop = "0"; - oStyle.paddingBottom = "0"; - oStyle.borderTopWidth = "0"; - oStyle.borderBottomWidth = "0"; - oStyle.height = 0; - - iWidth = $(nSizer).width(); - nToSize.style.width = _fnStringToCss( iWidth ); - aApplied.push( iWidth ); - }, anFootSizers, anFootToSize ); + _fnApplyToChildren( zeroOut, anFootSizers ); + + _fnApplyToChildren( function(nSizer) { + aAppliedFooter.push( _fnStringToCss( $(nSizer).width() ) ); + }, anFootSizers ); + + _fnApplyToChildren( function(nToSize, i) { + nToSize.style.width = aAppliedFooter[i]; + }, anFootToSize ); + $(anFootSizers).height(0); } @@ -3249,16 +3363,16 @@ /* "Hide" the header and footer that we used for the sizing. We want to also fix their width * to what they currently are */ - _fnApplyToChildren( function(nSizer) { + _fnApplyToChildren( function(nSizer, i) { nSizer.innerHTML = ""; - nSizer.style.width = _fnStringToCss( aApplied.shift() ); + nSizer.style.width = aApplied[i]; }, anHeadSizers ); if ( o.nTFoot !== null ) { - _fnApplyToChildren( function(nSizer) { + _fnApplyToChildren( function(nSizer, i) { nSizer.innerHTML = ""; - nSizer.style.width = _fnStringToCss( aApplied.shift() ); + nSizer.style.width = aAppliedFooter[i]; }, anFootSizers ); } @@ -3281,11 +3395,11 @@ /* Apply the calculated minimum width to the table wrappers */ nScrollBody.style.width = _fnStringToCss( iCorrection ); - nScrollHeadInner.parentNode.style.width = _fnStringToCss( iCorrection ); + o.nScrollHead.style.width = _fnStringToCss( iCorrection ); if ( o.nTFoot !== null ) { - nScrollFootInner.parentNode.style.width = _fnStringToCss( iCorrection ); + o.nScrollFoot.style.width = _fnStringToCss( iCorrection ); } /* And give the user a warning that we've stopped the table getting too small */ @@ -3304,11 +3418,11 @@ else { nScrollBody.style.width = _fnStringToCss( '100%' ); - nScrollHeadInner.parentNode.style.width = _fnStringToCss( '100%' ); + o.nScrollHead.style.width = _fnStringToCss( '100%' ); if ( o.nTFoot !== null ) { - nScrollFootInner.parentNode.style.width = _fnStringToCss( '100%' ); + o.nScrollFoot.style.width = _fnStringToCss( '100%' ); } } @@ -3357,7 +3471,7 @@ nScrollFootInner.style.paddingRight = bScrolling ? o.oScroll.iBarWidth+"px" : "0px"; } - /* Adjust the position of the header incase we loose the y-scrollbar */ + /* Adjust the position of the header in case we loose the y-scrollbar */ $(nScrollBody).scroll(); /* If sorting or filtering has occurred, jump the scrolling back to the top */ @@ -3378,27 +3492,34 @@ */ function _fnApplyToChildren( fn, an1, an2 ) { - for ( var i=0, iLen=an1.length ; i<iLen ; i++ ) + var index=0, i=0, iLen=an1.length; + var nNode1, nNode2; + + while ( i < iLen ) { - for ( var j=0, jLen=an1[i].childNodes.length ; j<jLen ; j++ ) + nNode1 = an1[i].firstChild; + nNode2 = an2 ? an2[i].firstChild : null; + while ( nNode1 ) { - if ( an1[i].childNodes[j].nodeType == 1 ) + if ( nNode1.nodeType === 1 ) { if ( an2 ) { - fn( an1[i].childNodes[j], an2[i].childNodes[j] ); + fn( nNode1, nNode2, index ); } else { - fn( an1[i].childNodes[j] ); + fn( nNode1, index ); } + index++; } + nNode1 = nNode1.nextSibling; + nNode2 = an2 ? nNode2.nextSibling : null; } + i++; } } - - /** * Convert a CSS unit width to pixels (e.g. 2em) * @param {string} sWidth width to be converted @@ -3415,7 +3536,7 @@ if ( !nParent ) { - nParent = document.getElementsByTagName('body')[0]; + nParent = document.body; } var iWidth; @@ -3445,6 +3566,7 @@ var i, iIndex, iCorrector, iWidth; var oHeaders = $('th', oSettings.nTHead); var widthAttr = oSettings.nTable.getAttribute('width'); + var nWrapper = oSettings.nTable.parentNode; /* Convert any user input sizes into pixel sizes */ for ( i=0 ; i<iColums ; i++ ) @@ -3456,7 +3578,7 @@ if ( oSettings.aoColumns[i].sWidth !== null ) { iTmpWidth = _fnConvertToWidth( oSettings.aoColumns[i].sWidthOrig, - oSettings.nTable.parentNode ); + nWrapper ); if ( iTmpWidth !== null ) { oSettings.aoColumns[i].sWidth = _fnStringToCss( iTmpWidth ); @@ -3556,7 +3678,6 @@ } /* Build the table and 'display' it */ - var nWrapper = oSettings.nTable.parentNode; nWrapper.appendChild( nCalcTmp ); /* When scrolling (X or Y) we want to set the width of the table as appropriate. However, @@ -3683,7 +3804,7 @@ * Get the widest node * @param {object} oSettings dataTables settings object * @param {int} iCol column of interest - * @returns {string} max strlens for each column + * @returns {node} widest table node * @memberof DataTable#oApi */ function _fnGetWidestNode( oSettings, iCol ) @@ -3708,7 +3829,7 @@ * Get the maximum strlen for each data column * @param {object} oSettings dataTables settings object * @param {int} iCol column of interest - * @returns {string} max strlens for each column + * @returns {string} max string length for each column * @memberof DataTable#oApi */ function _fnGetMaxLenString( oSettings, iCol ) @@ -3802,8 +3923,6 @@ return (w1 - w2); } - - /** * Change the order of the table * @param {object} oSettings dataTables settings object @@ -3830,7 +3949,7 @@ oSettings.aaSortingFixed.concat( oSettings.aaSorting ) : oSettings.aaSorting.slice(); - /* If there is a sorting data type, and a fuction belonging to it, then we need to + /* If there is a sorting data type, and a function belonging to it, then we need to * get the data from the developer's function and apply it for this column */ for ( i=0 ; i<aaSort.length ; i++ ) @@ -4012,17 +4131,17 @@ * twice - once for when bProcessing is enabled, and another time for when it is * disabled, as we need to perform slightly different actions. * Basically the issue here is that the Javascript engine in modern browsers don't - * appear to allow the rendering engine to update the display while it is still excuting + * appear to allow the rendering engine to update the display while it is still executing * it's thread (well - it does but only after long intervals). This means that the * 'processing' display doesn't appear for a table sort. To break the js thread up a bit * I force an execution break by using setTimeout - but this breaks the expected * thread continuation for the end-developer's point of view (their code would execute - * too early), so we on;y do it when we absolutely have to. + * too early), so we only do it when we absolutely have to. */ var fnInnerSorting = function () { var iColumn, iNextSort; - /* If the shift key is pressed then we are multipe column sorting */ + /* If the shift key is pressed then we are multiple column sorting */ if ( e.shiftKey ) { /* Are we already doing some kind of sort on this column? */ @@ -4195,10 +4314,10 @@ * Apply the required classes to the table body * Note that this is given as a feature switch since it can significantly slow down a sort * on large data sets (adding and removing of classes is always slow at the best of times..) - * Further to this, note that this code is admitadly fairly ugly. It could be made a lot - * simpiler using jQuery selectors and add/removeClass, but that is significantly slower + * Further to this, note that this code is admittedly fairly ugly. It could be made a lot + * simpler using jQuery selectors and add/removeClass, but that is significantly slower * (on the order of 5 times slower) - hence the direct DOM manipulation here. - * Note that for defered drawing we do use jQuery - the reason being that taking the first + * Note that for deferred drawing we do use jQuery - the reason being that taking the first * row found to see if the whole column needs processed can miss classes since the first * column might be new. */ @@ -4207,56 +4326,49 @@ if ( oSettings.oFeatures.bSort && oSettings.oFeatures.bSortClasses ) { var nTds = _fnGetTdNodes( oSettings ); - - /* Remove the old classes */ - if ( oSettings.oFeatures.bDeferRender ) + + /* Determine what the sorting class for each column should be */ + var iClass, iTargetCol; + var asClasses = []; + for (i = 0; i < iColumns; i++) { - $(nTds).removeClass(sClass+'1 '+sClass+'2 '+sClass+'3'); + asClasses.push(""); } - else if ( nTds.length >= iColumns ) + for (i = 0, iClass = 1; i < aaSort.length; i++) { - for ( i=0 ; i<iColumns ; i++ ) + iTargetCol = parseInt( aaSort[i][0], 10 ); + asClasses[iTargetCol] = sClass + iClass; + + if ( iClass < 3 ) { - if ( nTds[i].className.indexOf(sClass+"1") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( sClass+"1", "" ) ); - } - } - else if ( nTds[i].className.indexOf(sClass+"2") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( sClass+"2", "" ) ); - } - } - else if ( nTds[i].className.indexOf(sClass+"3") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( " "+sClass+"3", "" ) ); - } - } + iClass++; } } - /* Add the new classes to the table */ - var iClass = 1, iTargetCol; - for ( i=0 ; i<aaSort.length ; i++ ) + /* Make changes to the classes for each cell as needed */ + var reClass = new RegExp(sClass + "[123]"); + var sTmpClass, sCurrentClass, sNewClass; + for ( i=0, iLen=nTds.length; i<iLen; i++ ) { - iTargetCol = parseInt( aaSort[i][0], 10 ); - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) + /* Determine which column we're looking at */ + iTargetCol = i % iColumns; + + /* What is the full list of classes now */ + sCurrentClass = nTds[i].className; + /* What sorting class should be applied? */ + sNewClass = asClasses[iTargetCol]; + /* What would the new full list be if we did a replacement? */ + sTmpClass = sCurrentClass.replace(reClass, sNewClass); + + if ( sTmpClass != sCurrentClass ) { - nTds[(iColumns*j)+iTargetCol].className += " "+sClass+iClass; + /* We changed something */ + nTds[i].className = $.trim( sTmpClass ); } - - if ( iClass < 3 ) + else if ( sNewClass.length > 0 && sCurrentClass.indexOf(sNewClass) == -1 ) { - iClass++; + /* We need to add a class */ + nTds[i].className = sCurrentClass + " " + sNewClass; } } } @@ -4344,7 +4456,7 @@ $.extend( true, oSettings.aoPreSearchCols, oData.aoSearchCols ); /* Column visibility state - * Pass back visibiliy settings to the init handler, but to do not here override + * Pass back visibility settings to the init handler, but to do not here override * the init object that the user might have passed in */ oInit.saved_aoColumns = []; @@ -4396,35 +4508,50 @@ } /* Are we going to go over the cookie limit of 4KiB? If so, try to delete a cookies - * belonging to DataTables. This is FAR from bullet proof + * belonging to DataTables. */ - var sOldName="", iOldTime=9999999999999; - var iLength = _fnReadCookie( sNameFile )!==null ? document.cookie.length : - sFullCookie.length + document.cookie.length; + var + aCookies =document.cookie.split(';'), + iNewCookieLen = sFullCookie.split(';')[0].length, + aOldCookies = []; - if ( iLength+10 > 4096 ) /* Magic 10 for padding */ + if ( iNewCookieLen+document.cookie.length+10 > 4096 ) /* Magic 10 for padding */ { - var aCookies =document.cookie.split(';'); for ( var i=0, iLen=aCookies.length ; i<iLen ; i++ ) { if ( aCookies[i].indexOf( sBaseName ) != -1 ) { /* It's a DataTables cookie, so eval it and check the time stamp */ var aSplitCookie = aCookies[i].split('='); - try { oData = eval( '('+decodeURIComponent(aSplitCookie[1])+')' ); } - catch( e ) { continue; } - - if ( oData.iCreate && oData.iCreate < iOldTime ) - { - sOldName = aSplitCookie[0]; - iOldTime = oData.iCreate; + try { + oData = eval( '('+decodeURIComponent(aSplitCookie[1])+')' ); + + if ( oData && oData.iCreate ) + { + aOldCookies.push( { + "name": aSplitCookie[0], + "time": oData.iCreate + } ); + } } + catch( e ) {} } } - - if ( sOldName !== "" ) - { - document.cookie = sOldName+"=; expires=Thu, 01-Jan-1970 00:00:01 GMT; path="+ + + // Make sure we delete the oldest ones first + aOldCookies.sort( function (a, b) { + return b.time - a.time; + } ); + + // Eliminate as many old DataTables cookies as we need to + while ( iNewCookieLen + document.cookie.length + 10 > 4096 ) { + if ( aOldCookies.length === 0 ) { + // Deleted all DT cookies and still not enough space. Can't state save + return; + } + + var old = aOldCookies.pop(); + document.cookie = old.name+"=; expires=Thu, 01-Jan-1970 00:00:01 GMT; path="+ aParts.join('/') + "/"; } } @@ -4464,7 +4591,6 @@ } - /** * Return the settings object for a particular table * @param {node} nTable table we are using as a dataTable @@ -4518,7 +4644,7 @@ { var anReturn = []; var iCorrector; - var anTds; + var anTds, nTd; var iRow, iRows=oSettings.aoData.length, iColumn, iColumns, oData, sNodeName, iStart=0, iEnd=iRows; @@ -4536,13 +4662,15 @@ { /* get the TD child nodes - taking into account text etc nodes */ anTds = []; - for ( iColumn=0, iColumns=oData.nTr.childNodes.length ; iColumn<iColumns ; iColumn++ ) + nTd = oData.nTr.firstChild; + while ( nTd ) { - sNodeName = oData.nTr.childNodes[iColumn].nodeName.toLowerCase(); + sNodeName = nTd.nodeName.toLowerCase(); if ( sNodeName == 'td' || sNodeName == 'th' ) { - anTds.push( oData.nTr.childNodes[iColumn] ); + anTds.push( nTd ); } + nTd = nTd.nextSibling; } iCorrector = 0; @@ -4631,17 +4759,21 @@ */ function _fnExtend( oOut, oExtender ) { + var val; + for ( var prop in oExtender ) { if ( oExtender.hasOwnProperty(prop) ) { - if ( typeof oInit[prop] === 'object' && $.isArray(oExtender[prop]) === false ) + val = oExtender[prop]; + + if ( typeof oInit[prop] === 'object' && val !== null && $.isArray(val) === false ) { - $.extend( true, oOut[prop], oExtender[prop] ); + $.extend( true, oOut[prop], val ); } else { - oOut[prop] = oExtender[prop]; + oOut[prop] = val; } } } @@ -4652,7 +4784,7 @@ /** * Bind an event handers to allow a click or return key to activate the callback. - * This is good for accessability since a return on the keyboard will have the + * This is good for accessibility since a return on the keyboard will have the * same effect as a click, if the element has focus. * @param {element} n Element to bind the action to * @param {object} oData Data object to pass to the triggered function @@ -4681,7 +4813,7 @@ * Register a callback function. Easily allows a callback function to be added to * an array store of callback functions that can then all be called together. * @param {object} oSettings dataTables settings object - * @param {string} sStore Name of the array storeage for the callbacks in oSettings + * @param {string} sStore Name of the array storage for the callbacks in oSettings * @param {function} fn Function to be called back * @param {string} sName Identifying name for the callback (i.e. a label) * @memberof DataTable#oApi @@ -4703,7 +4835,7 @@ * array store is done backwards! Further note that you do not want to fire off triggers * in time sensitive applications (for example cell creation) as its slow. * @param {object} oSettings dataTables settings object - * @param {string} sStore Name of the array storeage for the callbacks in oSettings + * @param {string} sStore Name of the array storage for the callbacks in oSettings * @param {string} sTrigger Name of the jQuery custom event to trigger. If null no trigger * is fired * @param {array} aArgs Array of arguments to pass to the callback function / trigger @@ -4731,7 +4863,7 @@ /** * JSON stringify. If JSON.stringify it provided by the browser, json2.js or any other * library, then we use that as it is fast, safe and accurate. If the function isn't - * available then we need to built it ourselves - the insperation for this function comes + * available then we need to built it ourselves - the inspiration for this function comes * from Craig Buckler ( http://www.sitepoint.com/javascript-json-serialization/ ). It is * not perfect and absolutely should not be used as a replacement to json2.js - but it does * do what we need, without requiring a dependency for DataTables. @@ -4779,9 +4911,32 @@ return (bArr ? "[" : "{") + json + (bArr ? "]" : "}"); }; - + /** + * From some browsers (specifically IE6/7) we need special handling to work around browser + * bugs - this function is used to detect when these workarounds are needed. + * @param {object} oSettings dataTables settings object + * @memberof DataTable#oApi + */ + function _fnBrowserDetect( oSettings ) + { + /* IE6/7 will oversize a width 100% element inside a scrolling element, to include the + * width of the scrollbar, while other browsers ensure the inner element is contained + * without forcing scrolling + */ + var n = $( + '<div style="position:absolute; top:0; left:0; height:1px; width:1px; overflow:hidden">'+ + '<div style="position:absolute; top:1px; left:1px; width:100px; overflow:scroll;">'+ + '<div id="DT_BrowserTest" style="width:100%; height:10px;"></div>'+ + '</div>'+ + '</div>')[0]; + + document.body.appendChild( n ); + oSettings.oBrowser.bScrollOversize = $('#DT_BrowserTest', n)[0].offsetWidth === 100 ? true : false; + document.body.removeChild( n ); + } + /** * Perform a jQuery selector action on the table's TR elements (from the tbody) and * return the resulting jQuery object. @@ -4913,11 +5068,11 @@ /** * Almost identical to $ in operation, but in this case returns the data for the matched * rows - as such, the jQuery selector used should match TR row nodes or TD/TH cell nodes - * rather than any decendents, so the data can be obtained for the row/cell. If matching + * rather than any descendants, so the data can be obtained for the row/cell. If matching * rows are found, the data returned is the original data array/object that was used to * create the row (or a generated array if from a DOM source). * - * This method is often useful incombination with $ where both functions are given the + * This method is often useful in-combination with $ where both functions are given the * same parameters and the array indexes will match identically. * @param {string|node|jQuery} sSelector jQuery selector or node collection to act on * @param {object} [oOpts] Optional parameters for modifying the rows to be included @@ -4981,8 +5136,8 @@ * <ul> * <li>1D array of data - add a single row with the data provided</li> * <li>2D array of arrays - add multiple rows in a single call</li> - * <li>object - data object when using <i>mDataProp</i></li> - * <li>array of objects - multiple data objects when using <i>mDataProp</i></li> + * <li>object - data object when using <i>mData</i></li> + * <li>array of objects - multiple data objects when using <i>mData</i></li> * </ul> * @param {bool} [bRedraw=true] redraw the table or not * @returns {array} An array of integers, representing the list of indexes in @@ -5256,20 +5411,23 @@ var nBody = oSettings.nTBody; var i, iLen; - bRemove = (bRemove===undefined) ? false : true; + bRemove = (bRemove===undefined) ? false : bRemove; /* Flag to note that the table is currently being destroyed - no action should be taken */ oSettings.bDestroying = true; /* Fire off the destroy callbacks for plug-ins etc */ _fnCallbackFire( oSettings, "aoDestroyCallback", "destroy", [oSettings] ); - - /* Restore hidden columns */ - for ( i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) + + /* If the table is not being removed, restore the hidden columns */ + if ( !bRemove ) { - if ( oSettings.aoColumns[i].bVisible === false ) + for ( i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) { - this.fnSetColumnVis( i, true ); + if ( oSettings.aoColumns[i].bVisible === false ) + { + this.fnSetColumnVis( i, true ); + } } } @@ -5345,12 +5503,19 @@ oSettings.nTable.style.width = _fnStringToCss(oSettings.sDestroyWidth); } - /* If the were originally odd/even type classes - then we add them back here. Note - * this is not fool proof (for example if not all rows as odd/even classes - but + /* If the were originally stripe classes - then we add them back here. Note + * this is not fool proof (for example if not all rows had stripe classes - but * it's a good effort without getting carried away */ - $(nBody).children('tr:even').addClass( oSettings.asDestroyStripes[0] ); - $(nBody).children('tr:odd').addClass( oSettings.asDestroyStripes[1] ); + iLen = oSettings.asDestroyStripes.length; + if (iLen) + { + var anRows = $(nBody).children('tr'); + for ( i=0 ; i<iLen ; i++ ) + { + anRows.filter(':nth-child(' + iLen + 'n + ' + i + ')').addClass( oSettings.asDestroyStripes[i] ); + } + } /* Remove the settings object from the settings array */ for ( i=0, iLen=DataTable.settings.length ; i<iLen ; i++ ) @@ -5363,6 +5528,7 @@ /* End it all */ oSettings = null; + oInit = null; }; @@ -5456,7 +5622,17 @@ var n = oSettings.aanFeatures.f; for ( var i=0, iLen=n.length ; i<iLen ; i++ ) { - $(n[i]._DT_Input).val( sInput ); + // IE9 throws an 'unknown error' if document.activeElement is used + // inside an iframe or frame... + try { + if ( n[i]._DT_Input != document.activeElement ) + { + $(n[i]._DT_Input).val( sInput ); + } + } + catch ( e ) { + $(n[i]._DT_Input).val( sInput ); + } } } } @@ -5576,7 +5752,8 @@ * and column index including hidden columns * @param {node} nNode this can either be a TR, TD or TH in the table's body * @returns {int} If nNode is given as a TR, then a single index is returned, or - * if given as a cell, an array of [row index, column index (visible)] is given. + * if given as a cell, an array of [row index, column index (visible), + * column index (all)] is given. * @dtopt API * * @example @@ -5950,7 +6127,7 @@ * @param {node|int} mRow TR element you want to update or the aoData index * @param {int} [iColumn] The column to update (not used of mData is an array or object) * @param {bool} [bRedraw=true] Redraw the table or not - * @param {bool} [bAction=true] Perform predraw actions or not + * @param {bool} [bAction=true] Perform pre-draw actions or not * @returns {int} 0 on success, 1 on error * @dtopt API * @@ -5968,30 +6145,26 @@ var iRow = (typeof mRow === 'object') ? _fnNodeToDataIndex(oSettings, mRow) : mRow; - if ( oSettings.__fnUpdateDeep === undefined && $.isArray(mData) && typeof mData === 'object' ) + if ( $.isArray(mData) && iColumn === undefined ) { /* Array update - update the whole row */ oSettings.aoData[iRow]._aData = mData.slice(); /* Flag to the function that we are recursing */ - oSettings.__fnUpdateDeep = true; for ( i=0 ; i<oSettings.aoColumns.length ; i++ ) { this.fnUpdate( _fnGetCellData( oSettings, iRow, i ), iRow, i, false, false ); } - oSettings.__fnUpdateDeep = undefined; } - else if ( oSettings.__fnUpdateDeep === undefined && mData !== null && typeof mData === 'object' ) + else if ( $.isPlainObject(mData) && iColumn === undefined ) { /* Object update - update the whole row - assume the developer gets the object right */ oSettings.aoData[iRow]._aData = $.extend( true, {}, mData ); - oSettings.__fnUpdateDeep = true; for ( i=0 ; i<oSettings.aoColumns.length ; i++ ) { this.fnUpdate( _fnGetCellData( oSettings, iRow, i ), iRow, i, false, false ); } - oSettings.__fnUpdateDeep = undefined; } else { @@ -6020,8 +6193,10 @@ * will rebuild the search array - however, the redraw might be disabled by the user) */ var iDisplayIndex = $.inArray( iRow, oSettings.aiDisplay ); - oSettings.asDataSearch[iDisplayIndex] = _fnBuildSearchRow( oSettings, - _fnGetRowData( oSettings, iRow, 'filter' ) ); + oSettings.asDataSearch[iDisplayIndex] = _fnBuildSearchRow( + oSettings, + _fnGetRowData( oSettings, iRow, 'filter', _fnGetColumns( oSettings, 'bSearchable' ) ) + ); /* Perform pre-draw actions */ if ( bAction === undefined || bAction ) @@ -6059,7 +6234,7 @@ /* * This is really a good bit rubbish this method of exposing the internal methods - * publically... - To be fixed in 2.0 using methods on the prototype + * publicly... - To be fixed in 2.0 using methods on the prototype */ @@ -6171,7 +6346,9 @@ "_fnJsonString": _fnJsonString, "_fnRender": _fnRender, "_fnNodeToColumnIndex": _fnNodeToColumnIndex, - "_fnInfoMacros": _fnInfoMacros + "_fnInfoMacros": _fnInfoMacros, + "_fnBrowserDetect": _fnBrowserDetect, + "_fnGetColumns": _fnGetColumns }; $.extend( DataTable.ext.oApi, this.oApi ); @@ -6186,8 +6363,7 @@ var _that = this; - return this.each(function() { - + this.each(function() { var i=0, iLen, j, jLen, k, kLen; var sId = this.getAttribute( 'id' ); var bInitHandedOff = false; @@ -6429,42 +6605,29 @@ } /* Remove row stripe classes if they are already on the table row */ - var bStripeRemove = false; - var anRows = $(this).children('tbody').children('tr'); - for ( i=0, iLen=oSettings.asStripeClasses.length ; i<iLen ; i++ ) + iLen=oSettings.asStripeClasses.length; + oSettings.asDestroyStripes = []; + if (iLen) { - if ( anRows.filter(":lt(2)").hasClass( oSettings.asStripeClasses[i]) ) + var bStripeRemove = false; + var anRows = $(this).children('tbody').children('tr:lt(' + iLen + ')'); + for ( i=0 ; i<iLen ; i++ ) { - bStripeRemove = true; - break; - } - } - - if ( bStripeRemove ) - { - /* Store the classes which we are about to remove so they can be readded on destroy */ - oSettings.asDestroyStripes = [ '', '' ]; - if ( $(anRows[0]).hasClass(oSettings.oClasses.sStripeOdd) ) - { - oSettings.asDestroyStripes[0] += oSettings.oClasses.sStripeOdd+" "; - } - if ( $(anRows[0]).hasClass(oSettings.oClasses.sStripeEven) ) - { - oSettings.asDestroyStripes[0] += oSettings.oClasses.sStripeEven; - } - if ( $(anRows[1]).hasClass(oSettings.oClasses.sStripeOdd) ) - { - oSettings.asDestroyStripes[1] += oSettings.oClasses.sStripeOdd+" "; + if ( anRows.hasClass( oSettings.asStripeClasses[i] ) ) + { + bStripeRemove = true; + + /* Store the classes which we are about to remove so they can be re-added on destroy */ + oSettings.asDestroyStripes.push( oSettings.asStripeClasses[i] ); + } } - if ( $(anRows[1]).hasClass(oSettings.oClasses.sStripeEven) ) + + if ( bStripeRemove ) { - oSettings.asDestroyStripes[1] += oSettings.oClasses.sStripeEven; + anRows.removeClass( oSettings.asStripeClasses.join(' ') ); } - - anRows.removeClass( oSettings.asStripeClasses.join(' ') ); } - /* * Columns * See if we should load columns automatically or use defined ones @@ -6560,6 +6723,9 @@ * Cache the header, body and footer as required, creating them if needed */ + /* Browser support detection */ + _fnBrowserDetect( oSettings ); + // Work around for Webkit bug 83867 - store the caption-side before removing from doc var captions = $(this).children('caption').each( function () { this._captionSide = $(this).css('caption-side'); @@ -6627,6 +6793,8 @@ _fnInitialise( oSettings ); } } ); + _that = null; + return this; }; @@ -6736,7 +6904,7 @@ * @type string * @default Version number */ - DataTable.version = "1.9.2"; + DataTable.version = "1.9.4"; /** * Private data store, containing all of the settings objects that are created for the @@ -6852,8 +7020,8 @@ * </il> * </ul> * - * Note that as of v1.9, it is typically preferable to use <i>mDataProp</i> to prepare data for - * the different uses that DataTables can put the data to. Specifically <i>mDataProp</i> when + * Note that as of v1.9, it is typically preferable to use <i>mData</i> to prepare data for + * the different uses that DataTables can put the data to. Specifically <i>mData</i> when * used as a function will give you a 'type' (sorting, filtering etc) that you can use to * prepare the data as required for the different types. As such, this method is deprecated. * @type array @@ -7018,8 +7186,8 @@ * </il> * </ul> * - * Note that as of v1.9, it is typically preferable to use <i>mDataProp</i> to prepare data for - * the different uses that DataTables can put the data to. Specifically <i>mDataProp</i> when + * Note that as of v1.9, it is typically preferable to use <i>mData</i> to prepare data for + * the different uses that DataTables can put the data to. Specifically <i>mData</i> when * used as a function will give you a 'type' (sorting, filtering etc) that you can use to * prepare the data as required for the different types. As such, this method is deprecated. * @type object @@ -7346,7 +7514,7 @@ /** * Data object from the original data source for the row. This is either * an array if using the traditional form of DataTables, or an object if - * using mDataProp options. The exact type will depend on the passed in + * using mData options. The exact type will depend on the passed in * data from the data source, or will be an array if using DOM a data * source. * @type array|object @@ -7440,14 +7608,14 @@ "bSortable": null, /** - * When using fnRender, you have two options for what to do with the data, - * and this property serves as the switch. Firstly, you can have the sorting - * and filtering use the rendered value (true - default), or you can have - * the sorting and filtering us the original value (false). - * - * *NOTE* It is it is advisable now to use mDataProp as a function and make - * use of the 'type' that it gives, allowing (potentially) different data to - * be used for sorting, filtering, display and type detection. + * <code>Deprecated</code> When using fnRender, you have two options for what + * to do with the data, and this property serves as the switch. Firstly, you + * can have the sorting and filtering use the rendered value (true - default), + * or you can have the sorting and filtering us the original value (false). + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type boolean * @deprecated */ @@ -7470,9 +7638,9 @@ /** * Developer definable function that is called whenever a cell is created (Ajax source, - * etc) or processed for input (DOM source). This can be used as a compliment to fnRender + * etc) or processed for input (DOM source). This can be used as a compliment to mRender * allowing you to modify the DOM element (add background colour for example) when the - * element is available (since it is not when fnRender is called). + * element is available. * @type function * @param {element} nTd The TD node that has been created * @param {*} sData The Data for the cell @@ -7485,7 +7653,7 @@ /** * Function to get data from a cell in a column. You should <b>never</b> * access data directly through _aData internally in DataTables - always use - * the method attached to this property. It allows mDataProp to function as + * the method attached to this property. It allows mData to function as * required. This function is automatically assigned by the column * initialisation method * @type function @@ -7499,8 +7667,12 @@ "fnGetData": null, /** - * Custom display function that will be called for the display of each cell - * in this column. + * <code>Deprecated</code> Custom display function that will be called for the + * display of each cell in this column. + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type function * @param {object} o Object with the following parameters: * @param {int} o.iDataRow The row in aoData @@ -7509,13 +7681,14 @@ * @param {object} o.oSettings The settings object for this DataTables instance * @returns {string} The string you which to use in the display * @default null + * @deprecated */ "fnRender": null, /** * Function to set data for a cell in the column. You should <b>never</b> * set the data directly to _aData internally in DataTables - always use - * this method. It allows mDataProp to function as required. This function + * this method. It allows mData to function as required. This function * is automatically assigned by the column initialisation method * @type function * @param {array|object} oData The data array/object for the array @@ -7532,7 +7705,17 @@ * @type function|int|string|null * @default null */ - "mDataProp": null, + "mData": null, + + /** + * Partner property to mData which is used (only when defined) to get + * the data - i.e. it is basically the same as mData, but without the + * 'set' option, and also the data fed to it is the result from mData. + * This is the rendering method to match the data method of mData. + * @type function|int|string|null + * @default null + */ + "mRender": null, /** * Unique header TH/TD element for this column - this is what the sorting @@ -7573,7 +7756,7 @@ /** * Allows a default value to be given for a column's data, and will be used - * whenever a null data source is encountered (this can be because mDataProp + * whenever a null data source is encountered (this can be because mData * is set to null, or because the data source itself is null). * @type string * @default null @@ -7674,7 +7857,7 @@ * } ); * * @example - * // Using an array of objects as a data source (mDataProp) + * // Using an array of objects as a data source (mData) * $(document).ready( function () { * $('#example').dataTable( { * "aaData": [ @@ -7694,11 +7877,11 @@ * } * ], * "aoColumns": [ - * { "sTitle": "Engine", "mDataProp": "engine" }, - * { "sTitle": "Browser", "mDataProp": "browser" }, - * { "sTitle": "Platform", "mDataProp": "platform" }, - * { "sTitle": "Version", "mDataProp": "version" }, - * { "sTitle": "Grade", "mDataProp": "grade" } + * { "sTitle": "Engine", "mData": "engine" }, + * { "sTitle": "Browser", "mData": "browser" }, + * { "sTitle": "Platform", "mData": "platform" }, + * { "sTitle": "Version", "mData": "version" }, + * { "sTitle": "Grade", "mData": "grade" } * ] * } ); * } ); @@ -7767,7 +7950,7 @@ * @dtopt Option * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aLengthMenu": [[10, 25, 50, -1], [10, 25, 50, "All"]] * } ); @@ -7777,7 +7960,7 @@ * // Setting the default display length as well as length menu * // This is likely to be wanted if you remove the '10' option which * // is the iDisplayLength default. - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "iDisplayLength": 25, * "aLengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]] @@ -7849,7 +8032,7 @@ * array may be of any length, and DataTables will apply each class * sequentially, looping when required. * @type array - * @default null <i>Will take the values determinted by the oClasses.sStripe* + * @default null <i>Will take the values determined by the oClasses.sStripe* * options</i> * @dtopt Option * @@ -7892,7 +8075,7 @@ * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/arrays.txt", * "bDeferRender": true @@ -7912,7 +8095,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200px", * "bPaginate": false @@ -8051,7 +8234,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * initTable(); * tableActions(); * } ); @@ -8083,7 +8266,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollAutoCss": false, * "sScrollY": "200px" @@ -8105,7 +8288,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200", * "bScrollCollapse": true @@ -8127,7 +8310,7 @@ * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollInfinite": true, * "bScrollCollapse": true, @@ -8184,7 +8367,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bSortCellsTop": true * } ); @@ -8271,7 +8454,7 @@ * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnCreatedRow": function( nRow, aData, iDataIndex ) { * // Bold the grade for all 'A' grade browsers @@ -8344,7 +8527,7 @@ * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnFormatNumber": function ( iIn ) { * if ( iIn < 1000 ) { @@ -8503,7 +8686,7 @@ * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnRowCallback": function( nRow, aData, iDisplayIndex, iDisplayIndexFull ) { * // Bold the grade for all 'A' grade browsers @@ -8536,7 +8719,7 @@ * * @example * // POST data to server - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bProcessing": true, * "bServerSide": true, @@ -8558,7 +8741,11 @@ "url": sUrl, "data": aoData, "success": function (json) { - $(oSettings.oInstance).trigger('xhr', oSettings); + if ( json.sError ) { + oSettings.oApi._fnLog( oSettings, 0, json.sError ); + } + + $(oSettings.oInstance).trigger('xhr', [oSettings, json]); fnCallback( json ); }, "dataType": "json", @@ -8592,7 +8779,7 @@ * @dtopt Server-side * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bProcessing": true, * "bServerSide": true, @@ -8617,7 +8804,7 @@ * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoad": function (oSettings) { @@ -8667,21 +8854,23 @@ * * @example * // Remove a saved filter, so filtering is never loaded - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoadParams": function (oSettings, oData) { * oData.oSearch.sSearch = ""; + * } * } ); * } ); * * @example * // Disallow state loading by returning false - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoadParams": function (oSettings, oData) { * return false; + * } * } ); * } ); */ @@ -8698,11 +8887,12 @@ * * @example * // Show an alert with the filtering value that was saved - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoaded": function (oSettings, oData) { * alert( 'Saved filter was: '+oData.oSearch.sSearch ); + * } * } ); * } ); */ @@ -8720,7 +8910,7 @@ * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateSave": function (oSettings, oData) { @@ -8760,11 +8950,12 @@ * * @example * // Remove a saved filter, so filtering is never saved - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateSaveParams": function (oSettings, oData) { * oData.oSearch.sSearch = ""; + * } * } ); * } ); */ @@ -8781,7 +8972,7 @@ * @example * $(document).ready( function() { * $('#example').dataTable( { - * "iCookieDuration": 60*60*24 // 1 day + * "iCookieDuration": 60*60*24; // 1 day * } ); * } ) */ @@ -8806,7 +8997,7 @@ * * @example * // 57 records available in the table, no filtering applied - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/server_processing.php", @@ -8816,7 +9007,7 @@ * * @example * // 57 records after filtering, 100 without filtering (an initial filter applied) - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/server_processing.php", @@ -8877,7 +9068,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollInfinite": true, * "bScrollCollapse": true, @@ -8901,7 +9092,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "iTabIndex": 1 * } ); @@ -8933,7 +9124,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oAria": { @@ -8954,7 +9145,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oAria": { @@ -8981,7 +9172,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -9002,7 +9193,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -9016,14 +9207,14 @@ /** - * Text to use when using the 'full_numbers' type of pagination for the - * button to take the user to the next page. + * Text to use for the 'next' pagination button (to take the user to the + * next page). * @type string * @default Next * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -9037,14 +9228,14 @@ /** - * Text to use when using the 'full_numbers' type of pagination for the - * button to take the user to the previous page. + * Text to use for the 'previous' pagination button (to take the user to + * the previous page). * @type string * @default Previous * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -9067,7 +9258,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sEmptyTable": "No data available in table" @@ -9088,7 +9279,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfo": "Got a total of _TOTAL_ entries to show (_START_ to _END_)" @@ -9107,7 +9298,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoEmpty": "No entries to show" @@ -9127,7 +9318,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoFiltered": " - filtering from _MAX_ records" @@ -9148,7 +9339,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoPostFix": "All records shown are derived from real information." @@ -9169,7 +9360,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoThousands": "'" @@ -9191,7 +9382,7 @@ * * @example * // Language change only - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sLengthMenu": "Display _MENU_ records" @@ -9201,7 +9392,7 @@ * * @example * // Language and options change - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sLengthMenu": 'Display <select>'+ @@ -9249,7 +9440,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sProcessing": "DataTables is currently busy" @@ -9272,7 +9463,7 @@ * * @example * // Input text box will be appended at the end automatically - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sSearch": "Filter records:" @@ -9282,7 +9473,7 @@ * * @example * // Specify where the filter should appear - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sSearch": "Apply filter _INPUT_ to table" @@ -9305,7 +9496,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sUrl": "http://www.sprymedia.co.uk/dataTables/lang.txt" @@ -9325,7 +9516,7 @@ * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sZeroRecords": "No records to display" @@ -9371,7 +9562,7 @@ * * @example * // Get data from { "data": [...] } - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/data.txt", * "sAjaxDataProp": "data" @@ -9380,7 +9571,7 @@ * * @example * // Get data from { "data": { "inner": [...] } } - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/data.txt", * "sAjaxDataProp": "data.inner" @@ -9418,7 +9609,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sCookiePrefix": "my_datatable_", * } ); @@ -9470,7 +9661,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sDom": '<"top"i>rt<"bottom"flp><"clear">' * } ); @@ -9508,7 +9699,7 @@ * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollX": "100%", * "bScrollCollapse": true @@ -9530,7 +9721,7 @@ * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollX": "100%", * "sScrollXInner": "110%" @@ -9552,7 +9743,7 @@ * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200px", * "bPaginate": false @@ -9571,7 +9762,7 @@ * @dtopt Server-side * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/post.php", @@ -9599,7 +9790,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "aDataSort": [ 0, 1 ], "aTargets": [ 0 ] }, @@ -9611,7 +9802,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "aDataSort": [ 0, 1 ] }, @@ -9636,7 +9827,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "asSorting": [ "asc" ], "aTargets": [ 1 ] }, @@ -9648,7 +9839,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -9671,7 +9862,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bSearchable": false, "aTargets": [ 0 ] } @@ -9680,7 +9871,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bSearchable": false }, @@ -9702,7 +9893,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bSortable": false, "aTargets": [ 0 ] } @@ -9711,7 +9902,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bSortable": false }, @@ -9726,51 +9917,18 @@ /** - * When using fnRender() for a column, you may wish to use the original data - * (before rendering) for sorting and filtering (the default is to used the - * rendered data that the user can see). This may be useful for dates etc. + * <code>Deprecated</code> When using fnRender() for a column, you may wish + * to use the original data (before rendering) for sorting and filtering + * (the default is to used the rendered data that the user can see). This + * may be useful for dates etc. * - * *NOTE* It is it is advisable now to use mDataProp as a function and make - * use of the 'type' that it gives, allowing (potentially) different data to - * be used for sorting, filtering, display and type detection. + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type boolean * @default true * @dtopt Columns - * - * @example - * // Using aoColumnDefs - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumnDefs": [ - * { - * "fnRender": function ( oObj ) { - * return oObj.aData[0] +' '+ oObj.aData[3]; - * }, - * "bUseRendered": false, - * "aTargets": [ 0 ] - * } - * ] - * } ); - * } ); - * - * @example - * // Using aoColumns - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumns": [ - * { - * "fnRender": function ( oObj ) { - * return oObj.aData[0] +' '+ oObj.aData[3]; - * }, - * "bUseRendered": false - * }, - * null, - * null, - * null, - * null - * ] - * } ); - * } ); + * @deprecated */ "bUseRendered": true, @@ -9783,7 +9941,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bVisible": false, "aTargets": [ 0 ] } @@ -9792,7 +9950,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bVisible": false }, @@ -9808,9 +9966,9 @@ /** * Developer definable function that is called whenever a cell is created (Ajax source, - * etc) or processed for input (DOM source). This can be used as a compliment to fnRender + * etc) or processed for input (DOM source). This can be used as a compliment to mRender * allowing you to modify the DOM element (add background colour for example) when the - * element is available (since it is not when fnRender is called). + * element is available. * @type function * @param {element} nTd The TD node that has been created * @param {*} sData The Data for the cell @@ -9820,7 +9978,7 @@ * @dtopt Columns * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ { * "aTargets": [3], @@ -9837,8 +9995,12 @@ /** - * Custom display function that will be called for the display of each cell in - * this column. + * <code>Deprecated</code> Custom display function that will be called for the + * display of each cell in this column. + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type function * @param {object} o Object with the following parameters: * @param {int} o.iDataRow The row in aoData @@ -9849,37 +10011,7 @@ * @param {*} val The current cell value * @returns {string} The string you which to use in the display * @dtopt Columns - * - * @example - * // Using aoColumnDefs - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumnDefs": [ - * { - * "fnRender": function ( o, val ) { - * return o.aData[0] +' '+ o.aData[3]; - * }, - * "aTargets": [ 0 ] - * } - * ] - * } ); - * } ); - * - * @example - * // Using aoColumns - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumns": [ - * { "fnRender": function ( o, val ) { - * return o.aData[0] +' '+ o.aData[3]; - * } }, - * null, - * null, - * null, - * null - * ] - * } ); - * } ); + * @deprecated */ "fnRender": null, @@ -9894,7 +10026,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "iDataSort": 1, "aTargets": [ 0 ] } @@ -9904,7 +10036,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "iDataSort": 1 }, @@ -9920,14 +10052,23 @@ /** + * This parameter has been replaced by mData in DataTables to ensure naming + * consistency. mDataProp can still be used, as there is backwards compatibility + * in DataTables for this option, but it is strongly recommended that you use + * mData in preference to mDataProp. + * @name DataTable.defaults.columns.mDataProp + */ + + + /** * This property can be used to read data from any JSON data source property, - * including deeply nested objects / properties. mDataProp can be given in a + * including deeply nested objects / properties. mData can be given in a * number of different ways which effect its behaviour: * <ul> * <li>integer - treated as an array index for the data source. This is the * default that DataTables uses (incrementally increased for each column).</li> * <li>string - read an object property from the data source. Note that you can - * use Javascript dotted notation to read deep properties/arrays from the + * use Javascript dotted notation to read deep properties / arrays from the * data source.</li> * <li>null - the sDefaultContent option will be used for the cell (null * by default, so you will need to specify the default content you want - @@ -9948,34 +10089,38 @@ * of call, but otherwise the return is what will be used for the data * requested.</li> * </ul> + * + * Note that prior to DataTables 1.9.2 mData was called mDataProp. The name change + * reflects the flexibility of this property and is consistent with the naming of + * mRender. If 'mDataProp' is given, then it will still be used by DataTables, as + * it automatically maps the old name to the new if required. * @type string|int|function|null * @default null <i>Use automatically calculated column index</i> * @dtopt Columns * * @example * // Read table data from objects - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/deep.txt", * "aoColumns": [ - * { "mDataProp": "engine" }, - * { "mDataProp": "browser" }, - * { "mDataProp": "platform.inner" }, - * { "mDataProp": "platform.details.0" }, - * { "mDataProp": "platform.details.1" } + * { "mData": "engine" }, + * { "mData": "browser" }, + * { "mData": "platform.inner" }, + * { "mData": "platform.details.0" }, + * { "mData": "platform.details.1" } * ] * } ); * } ); * * @example - * // Using mDataProp as a function to provide different information for + * // Using mData as a function to provide different information for * // sorting, filtering and display. In this case, currency (price) - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { - * "aoColumnDefs": [ - * { + * "aoColumnDefs": [ { * "aTargets": [ 0 ], - * "mDataProp": function ( source, type, val ) { + * "mData": function ( source, type, val ) { * if (type === 'set') { * source.price = val; * // Store the computed dislay and filter values for efficiency @@ -9992,11 +10137,80 @@ * // 'sort', 'type' and undefined all just use the integer * return source.price; * } + * } ] + * } ); + * } ); + */ + "mData": null, + + + /** + * This property is the rendering partner to mData and it is suggested that + * when you want to manipulate data for display (including filtering, sorting etc) + * but not altering the underlying data for the table, use this property. mData + * can actually do everything this property can and more, but this parameter is + * easier to use since there is no 'set' option. Like mData is can be given + * in a number of different ways to effect its behaviour, with the addition of + * supporting array syntax for easy outputting of arrays (including arrays of + * objects): + * <ul> + * <li>integer - treated as an array index for the data source. This is the + * default that DataTables uses (incrementally increased for each column).</li> + * <li>string - read an object property from the data source. Note that you can + * use Javascript dotted notation to read deep properties / arrays from the + * data source and also array brackets to indicate that the data reader should + * loop over the data source array. When characters are given between the array + * brackets, these characters are used to join the data source array together. + * For example: "accounts[, ].name" would result in a comma separated list with + * the 'name' value from the 'accounts' array of objects.</li> + * <li>function - the function given will be executed whenever DataTables + * needs to set or get the data for a cell in the column. The function + * takes three parameters: + * <ul> + * <li>{array|object} The data source for the row (based on mData)</li> + * <li>{string} The type call data requested - this will be 'filter', 'display', + * 'type' or 'sort'.</li> + * <li>{array|object} The full data source for the row (not based on mData)</li> + * </ul> + * The return value from the function is what will be used for the data + * requested.</li> + * </ul> + * @type string|int|function|null + * @default null <i>Use mData</i> + * @dtopt Columns + * + * @example + * // Create a comma separated list from an array of objects + * $(document).ready( function() { + * var oTable = $('#example').dataTable( { + * "sAjaxSource": "sources/deep.txt", + * "aoColumns": [ + * { "mData": "engine" }, + * { "mData": "browser" }, + * { + * "mData": "platform", + * "mRender": "[, ].name" + * } + * ] + * } ); + * } ); + * + * @example + * // Use as a function to create a link from the data source + * $(document).ready( function() { + * var oTable = $('#example').dataTable( { + * "aoColumnDefs": [ + * { + * "aTargets": [ 0 ], + * "mData": "download_link", + * "mRender": function ( data, type, full ) { + * return '<a href="'+data+'">Download</a>'; + * } * ] * } ); * } ); */ - "mDataProp": null, + "mRender": null, /** @@ -10009,13 +10223,12 @@ * * @example * // Make the first column use TH cells - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { - * "aoColumnDefs": [ - * { + * "aoColumnDefs": [ { * "aTargets": [ 0 ], * "sCellType": "th" - * ] + * } ] * } ); * } ); */ @@ -10030,7 +10243,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sClass": "my_class", "aTargets": [ 0 ] } @@ -10040,7 +10253,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sClass": "my_class" }, @@ -10071,7 +10284,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -10089,7 +10302,7 @@ /** * Allows a default value to be given for a column's data, and will be used - * whenever a null data source is encountered (this can be because mDataProp + * whenever a null data source is encountered (this can be because mData * is set to null, or because the data source itself is null). * @type string * @default null @@ -10097,11 +10310,11 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { - * "mDataProp": null, + * "mData": null, * "sDefaultContent": "Edit", * "aTargets": [ -1 ] * } @@ -10111,14 +10324,14 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, * null, * null, * { - * "mDataProp": null, + * "mData": null, * "sDefaultContent": "Edit" * } * ] @@ -10141,7 +10354,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sName": "engine", "aTargets": [ 0 ] }, @@ -10155,7 +10368,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sName": "engine" }, @@ -10172,7 +10385,7 @@ /** * Defines a data source type for the sorting which can be used to read - * realtime information from the table (updating the internally cached + * real-time information from the table (updating the internally cached * version) prior to sorting. This allows sorting to occur on user editable * elements such as form inputs. * @type string @@ -10181,7 +10394,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sSortDataType": "dom-text", "aTargets": [ 2, 3 ] }, @@ -10194,7 +10407,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -10219,7 +10432,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sTitle": "My column title", "aTargets": [ 0 ] } @@ -10229,7 +10442,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sTitle": "My column title" }, @@ -10258,7 +10471,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sType": "html", "aTargets": [ 0 ] } @@ -10268,7 +10481,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sType": "html" }, @@ -10285,7 +10498,7 @@ /** * Defining the width of the column, this parameter may take any CSS value - * (3em, 20px etc). DataTables applys 'smart' widths to columns which have not + * (3em, 20px etc). DataTables apples 'smart' widths to columns which have not * been given a specific width through this interface ensuring that the table * remains readable. * @type string @@ -10294,7 +10507,7 @@ * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sWidth": "20%", "aTargets": [ 0 ] } @@ -10304,7 +10517,7 @@ * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sWidth": "20%" }, @@ -10544,12 +10757,26 @@ * Information callback function. See * {@link DataTable.defaults.fnInfoCallback} * @type function - * @default + * @default null */ "fnInfoCallback": null }, /** + * Browser support parameters + * @namespace + */ + "oBrowser": { + /** + * Indicate if the browser incorrectly calculates width:100% inside a + * scrolling element (IE6/7) + * @type boolean + * @default false + */ + "bScrollOversize": false + }, + + /** * Array referencing the nodes which are used for the features. The * parameters of this object match what is allowed by sDom - i.e. * <ul> @@ -11310,7 +11537,6 @@ "sJUIFooter": "fg-toolbar ui-toolbar ui-widget-header ui-corner-bl ui-corner-br ui-helper-clearfix" } ); - /* * Variable: oPagination * Purpose: @@ -11385,17 +11611,22 @@ var oClasses = oSettings.oClasses; var an = oSettings.aanFeatures.p; + var nNode; /* Loop over each instance of the pager */ for ( var i=0, iLen=an.length ; i<iLen ; i++ ) { - if ( an[i].childNodes.length !== 0 ) + nNode = an[i].firstChild; + if ( nNode ) { - an[i].childNodes[0].className = ( oSettings._iDisplayStart === 0 ) ? - oClasses.sPagePrevDisabled : oClasses.sPagePrevEnabled; - - an[i].childNodes[1].className = ( oSettings.fnDisplayEnd() == oSettings.fnRecordsDisplay() ) ? - oClasses.sPageNextDisabled : oClasses.sPageNextEnabled; + /* Previous page */ + nNode.className = ( oSettings._iDisplayStart === 0 ) ? + oClasses.sPagePrevDisabled : oClasses.sPagePrevEnabled; + + /* Next page */ + nNode = nNode.nextSibling; + nNode.className = ( oSettings.fnDisplayEnd() == oSettings.fnRecordsDisplay() ) ? + oClasses.sPageNextDisabled : oClasses.sPageNextEnabled; } } } @@ -11484,7 +11715,7 @@ var sList = ""; var iStartButton, iEndButton, i, iLen; var oClasses = oSettings.oClasses; - var anButtons, anStatic, nPaginateList; + var anButtons, anStatic, nPaginateList, nNode; var an = oSettings.aanFeatures.p; var fnBind = function (j) { oSettings.oApi._fnBindAction( this, {"page": j+iStartButton-1}, function(e) { @@ -11535,18 +11766,19 @@ /* Loop over each instance of the pager */ for ( i=0, iLen=an.length ; i<iLen ; i++ ) { - if ( an[i].childNodes.length === 0 ) + nNode = an[i]; + if ( !nNode.hasChildNodes() ) { continue; } - /* Build up the dynamic list forst - html and listeners */ - $('span:eq(0)', an[i]) + /* Build up the dynamic list first - html and listeners */ + $('span:eq(0)', nNode) .html( sList ) .children('a').each( fnBind ); - /* Update the premanent botton's classes */ - anButtons = an[i].getElementsByTagName('a'); + /* Update the permanent button's classes */ + anButtons = nNode.getElementsByTagName('a'); anStatic = [ anButtons[0], anButtons[1], anButtons[anButtons.length-2], anButtons[anButtons.length-1] @@ -11849,6 +12081,7 @@ * @event * @param {event} e jQuery event object * @param {object} o DataTables settings object {@link DataTable.models.oSettings} + * @param {object} json JSON returned from the server */ /** @@ -11860,4 +12093,7 @@ * @param {event} e jQuery event object * @param {object} o DataTables settings object {@link DataTable.models.oSettings} */ -}(jQuery, window, document, undefined)); +})); + +}(window, document)); + diff --git a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.min.js b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.min.js index ce18c935..02694a4a 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.min.js +++ b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.min.js @@ -1,6 +1,6 @@ /* * File: jquery.dataTables.min.js - * Version: 1.9.2 + * Version: 1.9.4 * Author: Allan Jardine (www.sprymedia.co.uk) * Info: www.datatables.net * @@ -15,140 +15,141 @@ * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. 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-aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,sPaginationType:"two_button",iCookieDuration:0,sCookiePrefix:"",fnCookieCallback:null,aoStateSave:[],aoStateLoad:[],oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,fnServerData:null,aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null, -iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iDisplayEnd:10,_iRecordsTotal:0,_iRecordsDisplay:0,bJUI:null,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return this.oFeatures.bServerSide?parseInt(this._iRecordsTotal,10):this.aiDisplayMaster.length},fnRecordsDisplay:function(){return this.oFeatures.bServerSide?parseInt(this._iRecordsDisplay,10):this.aiDisplay.length},fnDisplayEnd:function(){return this.oFeatures.bServerSide? -!1===this.oFeatures.bPaginate||-1==this._iDisplayLength?this._iDisplayStart+this.aiDisplay.length:Math.min(this._iDisplayStart+this._iDisplayLength,this._iRecordsDisplay):this._iDisplayEnd},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null};j.ext=i.extend(!0,{},j.models.ext);i.extend(j.ext.oStdClasses,{sTable:"dataTable",sPagePrevEnabled:"paginate_enabled_previous",sPagePrevDisabled:"paginate_disabled_previous",sPageNextEnabled:"paginate_enabled_next",sPageNextDisabled:"paginate_disabled_next", -sPageJUINext:"",sPageJUIPrev:"",sPageButton:"paginate_button",sPageButtonActive:"paginate_active",sPageButtonStaticDisabled:"paginate_button paginate_button_disabled",sPageFirst:"first",sPagePrevious:"previous",sPageNext:"next",sPageLast:"last",sStripeOdd:"odd",sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc", -sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner", -sFooterTH:"",sJUIHeader:"",sJUIFooter:""});i.extend(j.ext.oJUIClasses,j.ext.oStdClasses,{sPagePrevEnabled:"fg-button ui-button ui-state-default ui-corner-left",sPagePrevDisabled:"fg-button ui-button ui-state-default ui-corner-left ui-state-disabled",sPageNextEnabled:"fg-button ui-button ui-state-default ui-corner-right",sPageNextDisabled:"fg-button ui-button ui-state-default ui-corner-right ui-state-disabled",sPageJUINext:"ui-icon ui-icon-circle-arrow-e",sPageJUIPrev:"ui-icon ui-icon-circle-arrow-w", -sPageButton:"fg-button ui-button ui-state-default",sPageButtonActive:"fg-button ui-button ui-state-default ui-state-disabled",sPageButtonStaticDisabled:"fg-button ui-button ui-state-default ui-state-disabled",sPageFirst:"first ui-corner-tl ui-corner-bl",sPageLast:"last ui-corner-tr ui-corner-br",sPaging:"dataTables_paginate fg-buttonset ui-buttonset fg-buttonset-multi ui-buttonset-multi paging_",sSortAsc:"ui-state-default",sSortDesc:"ui-state-default",sSortable:"ui-state-default",sSortableAsc:"ui-state-default", -sSortableDesc:"ui-state-default",sSortableNone:"ui-state-default",sSortJUIAsc:"css_right ui-icon ui-icon-triangle-1-n",sSortJUIDesc:"css_right ui-icon ui-icon-triangle-1-s",sSortJUI:"css_right ui-icon ui-icon-carat-2-n-s",sSortJUIAscAllowed:"css_right ui-icon ui-icon-carat-1-n",sSortJUIDescAllowed:"css_right ui-icon ui-icon-carat-1-s",sSortJUIWrapper:"DataTables_sort_wrapper",sSortIcon:"DataTables_sort_icon",sScrollHead:"dataTables_scrollHead ui-state-default",sScrollFoot:"dataTables_scrollFoot ui-state-default", -sFooterTH:"ui-state-default",sJUIHeader:"fg-toolbar ui-toolbar ui-widget-header ui-corner-tl ui-corner-tr ui-helper-clearfix",sJUIFooter:"fg-toolbar ui-toolbar ui-widget-header ui-corner-bl ui-corner-br ui-helper-clearfix"});i.extend(j.ext.oPagination,{two_button:{fnInit:function(e,j,n){var k=e.oLanguage.oPaginate,l=function(i){e.oApi._fnPageChange(e,i.data.action)&&n(e)},k=!e.bJUI?'<a class="'+e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sPrevious+'</a><a class="'+ -e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sNext+"</a>":'<a class="'+e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUIPrev+'"></span></a><a class="'+e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUINext+'"></span></a>';i(j).append(k);var t=i("a",j),k=t[0],t=t[1];e.oApi._fnBindAction(k,{action:"previous"},l);e.oApi._fnBindAction(t,{action:"next"},l); -e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_previous",t.id=e.sTableId+"_next",k.setAttribute("aria-controls",e.sTableId),t.setAttribute("aria-controls",e.sTableId))},fnUpdate:function(e){if(e.aanFeatures.p)for(var i=e.oClasses,j=e.aanFeatures.p,k=0,n=j.length;k<n;k++)0!==j[k].childNodes.length&&(j[k].childNodes[0].className=0===e._iDisplayStart?i.sPagePrevDisabled:i.sPagePrevEnabled,j[k].childNodes[1].className=e.fnDisplayEnd()==e.fnRecordsDisplay()?i.sPageNextDisabled:i.sPageNextEnabled)}}, -iFullNumbersShowPages:5,full_numbers:{fnInit:function(e,j,n){var k=e.oLanguage.oPaginate,l=e.oClasses,t=function(i){e.oApi._fnPageChange(e,i.data.action)&&n(e)};i(j).append('<a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageFirst+'">'+k.sFirst+'</a><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPagePrevious+'">'+k.sPrevious+'</a><span></span><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageNext+'">'+k.sNext+'</a><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+ -" "+l.sPageLast+'">'+k.sLast+"</a>");var v=i("a",j),k=v[0],l=v[1],z=v[2],v=v[3];e.oApi._fnBindAction(k,{action:"first"},t);e.oApi._fnBindAction(l,{action:"previous"},t);e.oApi._fnBindAction(z,{action:"next"},t);e.oApi._fnBindAction(v,{action:"last"},t);e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_first",l.id=e.sTableId+"_previous",z.id=e.sTableId+"_next",v.id=e.sTableId+"_last")},fnUpdate:function(e,o){if(e.aanFeatures.p){var l=j.ext.oPagination.iFullNumbersShowPages,k=Math.floor(l/ -2),n=Math.ceil(e.fnRecordsDisplay()/e._iDisplayLength),t=Math.ceil(e._iDisplayStart/e._iDisplayLength)+1,v="",z,D=e.oClasses,x,J=e.aanFeatures.p,H=function(i){e.oApi._fnBindAction(this,{page:i+z-1},function(i){e.oApi._fnPageChange(e,i.data.page);o(e);i.preventDefault()})};-1===e._iDisplayLength?t=k=z=1:n<l?(z=1,k=n):t<=k?(z=1,k=l):t>=n-k?(z=n-l+1,k=n):(z=t-Math.ceil(l/2)+1,k=z+l-1);for(l=z;l<=k;l++)v+=t!==l?'<a tabindex="'+e.iTabIndex+'" class="'+D.sPageButton+'">'+e.fnFormatNumber(l)+"</a>":'<a tabindex="'+ -e.iTabIndex+'" class="'+D.sPageButtonActive+'">'+e.fnFormatNumber(l)+"</a>";l=0;for(k=J.length;l<k;l++)0!==J[l].childNodes.length&&(i("span:eq(0)",J[l]).html(v).children("a").each(H),x=J[l].getElementsByTagName("a"),x=[x[0],x[1],x[x.length-2],x[x.length-1]],i(x).removeClass(D.sPageButton+" "+D.sPageButtonActive+" "+D.sPageButtonStaticDisabled),i([x[0],x[1]]).addClass(1==t?D.sPageButtonStaticDisabled:D.sPageButton),i([x[2],x[3]]).addClass(0===n||t===n||-1===e._iDisplayLength?D.sPageButtonStaticDisabled: -D.sPageButton))}}}});i.extend(j.ext.oSort,{"string-pre":function(e){"string"!=typeof e&&(e=null!==e&&e.toString?e.toString():"");return e.toLowerCase()},"string-asc":function(e,i){return e<i?-1:e>i?1:0},"string-desc":function(e,i){return e<i?1:e>i?-1:0},"html-pre":function(e){return e.replace(/<.*?>/g,"").toLowerCase()},"html-asc":function(e,i){return e<i?-1:e>i?1:0},"html-desc":function(e,i){return e<i?1:e>i?-1:0},"date-pre":function(e){e=Date.parse(e);if(isNaN(e)||""===e)e=Date.parse("01/01/1970 00:00:00"); -return e},"date-asc":function(e,i){return e-i},"date-desc":function(e,i){return i-e},"numeric-pre":function(e){return"-"==e||""===e?0:1*e},"numeric-asc":function(e,i){return e-i},"numeric-desc":function(e,i){return i-e}});i.extend(j.ext.aTypes,[function(e){if("number"===typeof e)return"numeric";if("string"!==typeof e)return null;var i,j=!1;i=e.charAt(0);if(-1=="0123456789-".indexOf(i))return null;for(var k=1;k<e.length;k++){i=e.charAt(k);if(-1=="0123456789.".indexOf(i))return null;if("."==i){if(j)return null; -j=!0}}return"numeric"},function(e){var i=Date.parse(e);return null!==i&&!isNaN(i)||"string"===typeof e&&0===e.length?"date":null},function(e){return"string"===typeof e&&-1!=e.indexOf("<")&&-1!=e.indexOf(">")?"html":null}]);i.fn.DataTable=j;i.fn.dataTable=j;i.fn.dataTableSettings=j.settings;i.fn.dataTableExt=j.ext})(jQuery,window,document,void 0); +(function(X,l,n){var L=function(h){var j=function(e){function o(a,b){var c=j.defaults.columns,d=a.aoColumns.length,c=h.extend({},j.models.oColumn,c,{sSortingClass:a.oClasses.sSortable,sSortingClassJUI:a.oClasses.sSortJUI,nTh:b?b:l.createElement("th"),sTitle:c.sTitle?c.sTitle:b?b.innerHTML:"",aDataSort:c.aDataSort?c.aDataSort:[d],mData:c.mData?c.oDefaults:d});a.aoColumns.push(c);if(a.aoPreSearchCols[d]===n||null===a.aoPreSearchCols[d])a.aoPreSearchCols[d]=h.extend({},j.models.oSearch);else if(c=a.aoPreSearchCols[d], +c.bRegex===n&&(c.bRegex=!0),c.bSmart===n&&(c.bSmart=!0),c.bCaseInsensitive===n)c.bCaseInsensitive=!0;m(a,d,null)}function m(a,b,c){var d=a.aoColumns[b];c!==n&&null!==c&&(c.mDataProp&&!c.mData&&(c.mData=c.mDataProp),c.sType!==n&&(d.sType=c.sType,d._bAutoType=!1),h.extend(d,c),p(d,c,"sWidth","sWidthOrig"),c.iDataSort!==n&&(d.aDataSort=[c.iDataSort]),p(d,c,"aDataSort"));var i=d.mRender?Q(d.mRender):null,f=Q(d.mData);d.fnGetData=function(a,b){var c=f(a,b);return d.mRender&&b&&""!==b?i(c,b,a):c};d.fnSetData= +L(d.mData);a.oFeatures.bSort||(d.bSortable=!1);!d.bSortable||-1==h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortableNone,d.sSortingClassJUI=""):-1==h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortable,d.sSortingClassJUI=a.oClasses.sSortJUI):-1!=h.inArray("asc",d.asSorting)&&-1==h.inArray("desc",d.asSorting)?(d.sSortingClass=a.oClasses.sSortableAsc,d.sSortingClassJUI=a.oClasses.sSortJUIAscAllowed):-1== +h.inArray("asc",d.asSorting)&&-1!=h.inArray("desc",d.asSorting)&&(d.sSortingClass=a.oClasses.sSortableDesc,d.sSortingClassJUI=a.oClasses.sSortJUIDescAllowed)}function k(a){if(!1===a.oFeatures.bAutoWidth)return!1;da(a);for(var b=0,c=a.aoColumns.length;b<c;b++)a.aoColumns[b].nTh.style.width=a.aoColumns[b].sWidth}function G(a,b){var c=r(a,"bVisible");return"number"===typeof c[b]?c[b]:null}function R(a,b){var c=r(a,"bVisible"),c=h.inArray(b,c);return-1!==c?c:null}function t(a){return r(a,"bVisible").length} +function r(a,b){var c=[];h.map(a.aoColumns,function(a,i){a[b]&&c.push(i)});return c}function B(a){for(var b=j.ext.aTypes,c=b.length,d=0;d<c;d++){var i=b[d](a);if(null!==i)return i}return"string"}function u(a,b){for(var c=b.split(","),d=[],i=0,f=a.aoColumns.length;i<f;i++)for(var g=0;g<f;g++)if(a.aoColumns[i].sName==c[g]){d.push(g);break}return d}function M(a){for(var b="",c=0,d=a.aoColumns.length;c<d;c++)b+=a.aoColumns[c].sName+",";return b.length==d?"":b.slice(0,-1)}function ta(a,b,c,d){var i,f, +g,e,w;if(b)for(i=b.length-1;0<=i;i--){var j=b[i].aTargets;h.isArray(j)||D(a,1,"aTargets must be an array of targets, not a "+typeof j);f=0;for(g=j.length;f<g;f++)if("number"===typeof j[f]&&0<=j[f]){for(;a.aoColumns.length<=j[f];)o(a);d(j[f],b[i])}else if("number"===typeof j[f]&&0>j[f])d(a.aoColumns.length+j[f],b[i]);else if("string"===typeof 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b,c,d,i,f,g,e;if(a.bDeferLoading||null===a.sAjaxSource)for(b=a.nTBody.firstChild;b;){if("TR"==b.nodeName.toUpperCase()){c=a.aoData.length;b._DT_RowIndex=c;a.aoData.push(h.extend(!0,{},j.models.oRow,{nTr:b}));a.aiDisplayMaster.push(c);f=b.firstChild;for(d=0;f;){g=f.nodeName.toUpperCase();if("TD"==g||"TH"==g)F(a,c,d,h.trim(f.innerHTML)),d++;f=f.nextSibling}}b=b.nextSibling}i=T(a);d=[];b=0;for(c=i.length;b<c;b++)for(f=i[b].firstChild;f;)g=f.nodeName.toUpperCase(),("TD"== +g||"TH"==g)&&d.push(f),f=f.nextSibling;c=0;for(i=a.aoColumns.length;c<i;c++){e=a.aoColumns[c];null===e.sTitle&&(e.sTitle=e.nTh.innerHTML);var w=e._bAutoType,o="function"===typeof e.fnRender,k=null!==e.sClass,n=e.bVisible,m,p;if(w||o||k||!n){g=0;for(b=a.aoData.length;g<b;g++)f=a.aoData[g],m=d[g*i+c],w&&"string"!=e.sType&&(p=v(a,g,c,"type"),""!==p&&(p=B(p),null===e.sType?e.sType=p:e.sType!=p&&"html"!=e.sType&&(e.sType="string"))),e.mRender?m.innerHTML=v(a,g,c,"display"):e.mData!==c&&(m.innerHTML=v(a, +g,c,"display")),o&&(p=S(a,g,c),m.innerHTML=p,e.bUseRendered&&F(a,g,c,p)),k&&(m.className+=" "+e.sClass),n?f._anHidden[c]=null:(f._anHidden[c]=m,m.parentNode.removeChild(m)),e.fnCreatedCell&&e.fnCreatedCell.call(a.oInstance,m,v(a,g,c,"display"),f._aData,g,c)}}if(0!==a.aoRowCreatedCallback.length){b=0;for(c=a.aoData.length;b<c;b++)f=a.aoData[b],A(a,"aoRowCreatedCallback",null,[f.nTr,f._aData,b])}}function I(a,b){return b._DT_RowIndex!==n?b._DT_RowIndex:null}function fa(a,b,c){for(var b=J(a,b),d=0,a= +a.aoColumns.length;d<a;d++)if(b[d]===c)return d;return-1}function Y(a,b,c,d){for(var i=[],f=0,g=d.length;f<g;f++)i.push(v(a,b,d[f],c));return i}function v(a,b,c,d){var i=a.aoColumns[c];if((c=i.fnGetData(a.aoData[b]._aData,d))===n)return a.iDrawError!=a.iDraw&&null===i.sDefaultContent&&(D(a,0,"Requested unknown parameter "+("function"==typeof i.mData?"{mData function}":"'"+i.mData+"'")+" from the data source for row 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j},fnHeaderCallback:null,fnInfoCallback:null,fnInitComplete:null,fnPreDrawCallback:null, +fnRowCallback:null,fnServerData:function(e,j,m,k){k.jqXHR=h.ajax({url:e,data:j,success:function(e){e.sError&&k.oApi._fnLog(k,0,e.sError);h(k.oInstance).trigger("xhr",[k,e]);m(e)},dataType:"json",cache:!1,type:k.sServerMethod,error:function(e,h){"parsererror"==h&&k.oApi._fnLog(k,0,"DataTables warning: JSON data from server could not be parsed. This is caused by a JSON formatting error.")}})},fnServerParams:null,fnStateLoad:function(e){var e=this.oApi._fnReadCookie(e.sCookiePrefix+e.sInstance),j;try{j= +"function"===typeof h.parseJSON?h.parseJSON(e):eval("("+e+")")}catch(m){j=null}return j},fnStateLoadParams:null,fnStateLoaded:null,fnStateSave:function(e,h){this.oApi._fnCreateCookie(e.sCookiePrefix+e.sInstance,this.oApi._fnJsonString(h),e.iCookieDuration,e.sCookiePrefix,e.fnCookieCallback)},fnStateSaveParams:null,iCookieDuration:7200,iDeferLoading:null,iDisplayLength:10,iDisplayStart:0,iScrollLoadGap:100,iTabIndex:0,oLanguage:{oAria:{sSortAscending:": activate to sort column ascending",sSortDescending:": activate to sort column descending"}, +oPaginate:{sFirst:"First",sLast:"Last",sNext:"Next",sPrevious:"Previous"},sEmptyTable:"No data available in table",sInfo:"Showing _START_ to _END_ of _TOTAL_ entries",sInfoEmpty:"Showing 0 to 0 of 0 entries",sInfoFiltered:"(filtered from _MAX_ total 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this.oFeatures.bServerSide?parseInt(this._iRecordsTotal,10):this.aiDisplayMaster.length}, +fnRecordsDisplay:function(){return this.oFeatures.bServerSide?parseInt(this._iRecordsDisplay,10):this.aiDisplay.length},fnDisplayEnd:function(){return this.oFeatures.bServerSide?!1===this.oFeatures.bPaginate||-1==this._iDisplayLength?this._iDisplayStart+this.aiDisplay.length:Math.min(this._iDisplayStart+this._iDisplayLength,this._iRecordsDisplay):this._iDisplayEnd},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null};j.ext=h.extend(!0,{},j.models.ext);h.extend(j.ext.oStdClasses, +{sTable:"dataTable",sPagePrevEnabled:"paginate_enabled_previous",sPagePrevDisabled:"paginate_disabled_previous",sPageNextEnabled:"paginate_enabled_next",sPageNextDisabled:"paginate_disabled_next",sPageJUINext:"",sPageJUIPrev:"",sPageButton:"paginate_button",sPageButtonActive:"paginate_active",sPageButtonStaticDisabled:"paginate_button paginate_button_disabled",sPageFirst:"first",sPagePrevious:"previous",sPageNext:"next",sPageLast:"last",sStripeOdd:"odd",sStripeEven:"even",sRowEmpty:"dataTables_empty", +sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"", +sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sFooterTH:"",sJUIHeader:"",sJUIFooter:""});h.extend(j.ext.oJUIClasses,j.ext.oStdClasses,{sPagePrevEnabled:"fg-button ui-button ui-state-default ui-corner-left",sPagePrevDisabled:"fg-button ui-button ui-state-default ui-corner-left ui-state-disabled",sPageNextEnabled:"fg-button ui-button ui-state-default ui-corner-right", +sPageNextDisabled:"fg-button ui-button ui-state-default ui-corner-right ui-state-disabled",sPageJUINext:"ui-icon ui-icon-circle-arrow-e",sPageJUIPrev:"ui-icon ui-icon-circle-arrow-w",sPageButton:"fg-button ui-button ui-state-default",sPageButtonActive:"fg-button ui-button ui-state-default ui-state-disabled",sPageButtonStaticDisabled:"fg-button ui-button ui-state-default ui-state-disabled",sPageFirst:"first ui-corner-tl ui-corner-bl",sPageLast:"last ui-corner-tr ui-corner-br",sPaging:"dataTables_paginate fg-buttonset ui-buttonset fg-buttonset-multi ui-buttonset-multi paging_", +sSortAsc:"ui-state-default",sSortDesc:"ui-state-default",sSortable:"ui-state-default",sSortableAsc:"ui-state-default",sSortableDesc:"ui-state-default",sSortableNone:"ui-state-default",sSortJUIAsc:"css_right ui-icon ui-icon-triangle-1-n",sSortJUIDesc:"css_right ui-icon ui-icon-triangle-1-s",sSortJUI:"css_right ui-icon ui-icon-carat-2-n-s",sSortJUIAscAllowed:"css_right ui-icon ui-icon-carat-1-n",sSortJUIDescAllowed:"css_right ui-icon ui-icon-carat-1-s",sSortJUIWrapper:"DataTables_sort_wrapper",sSortIcon:"DataTables_sort_icon", +sScrollHead:"dataTables_scrollHead ui-state-default",sScrollFoot:"dataTables_scrollFoot ui-state-default",sFooterTH:"ui-state-default",sJUIHeader:"fg-toolbar ui-toolbar ui-widget-header ui-corner-tl ui-corner-tr ui-helper-clearfix",sJUIFooter:"fg-toolbar ui-toolbar ui-widget-header ui-corner-bl ui-corner-br ui-helper-clearfix"});h.extend(j.ext.oPagination,{two_button:{fnInit:function(e,j,m){var k=e.oLanguage.oPaginate,n=function(h){e.oApi._fnPageChange(e,h.data.action)&&m(e)},k=!e.bJUI?'<a class="'+ +e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sPrevious+'</a><a class="'+e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button">'+k.sNext+"</a>":'<a class="'+e.oClasses.sPagePrevDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUIPrev+'"></span></a><a class="'+e.oClasses.sPageNextDisabled+'" tabindex="'+e.iTabIndex+'" role="button"><span class="'+e.oClasses.sPageJUINext+'"></span></a>';h(j).append(k);var l=h("a",j), +k=l[0],l=l[1];e.oApi._fnBindAction(k,{action:"previous"},n);e.oApi._fnBindAction(l,{action:"next"},n);e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_previous",l.id=e.sTableId+"_next",k.setAttribute("aria-controls",e.sTableId),l.setAttribute("aria-controls",e.sTableId))},fnUpdate:function(e){if(e.aanFeatures.p)for(var h=e.oClasses,j=e.aanFeatures.p,k,l=0,n=j.length;l<n;l++)if(k=j[l].firstChild)k.className=0===e._iDisplayStart?h.sPagePrevDisabled:h.sPagePrevEnabled,k=k.nextSibling, +k.className=e.fnDisplayEnd()==e.fnRecordsDisplay()?h.sPageNextDisabled:h.sPageNextEnabled}},iFullNumbersShowPages:5,full_numbers:{fnInit:function(e,j,m){var k=e.oLanguage.oPaginate,l=e.oClasses,n=function(h){e.oApi._fnPageChange(e,h.data.action)&&m(e)};h(j).append('<a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageFirst+'">'+k.sFirst+'</a><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPagePrevious+'">'+k.sPrevious+'</a><span></span><a tabindex="'+e.iTabIndex+'" class="'+ +l.sPageButton+" "+l.sPageNext+'">'+k.sNext+'</a><a tabindex="'+e.iTabIndex+'" class="'+l.sPageButton+" "+l.sPageLast+'">'+k.sLast+"</a>");var t=h("a",j),k=t[0],l=t[1],r=t[2],t=t[3];e.oApi._fnBindAction(k,{action:"first"},n);e.oApi._fnBindAction(l,{action:"previous"},n);e.oApi._fnBindAction(r,{action:"next"},n);e.oApi._fnBindAction(t,{action:"last"},n);e.aanFeatures.p||(j.id=e.sTableId+"_paginate",k.id=e.sTableId+"_first",l.id=e.sTableId+"_previous",r.id=e.sTableId+"_next",t.id=e.sTableId+"_last")}, +fnUpdate:function(e,o){if(e.aanFeatures.p){var m=j.ext.oPagination.iFullNumbersShowPages,k=Math.floor(m/2),l=Math.ceil(e.fnRecordsDisplay()/e._iDisplayLength),n=Math.ceil(e._iDisplayStart/e._iDisplayLength)+1,t="",r,B=e.oClasses,u,M=e.aanFeatures.p,L=function(h){e.oApi._fnBindAction(this,{page:h+r-1},function(h){e.oApi._fnPageChange(e,h.data.page);o(e);h.preventDefault()})};-1===e._iDisplayLength?n=k=r=1:l<m?(r=1,k=l):n<=k?(r=1,k=m):n>=l-k?(r=l-m+1,k=l):(r=n-Math.ceil(m/2)+1,k=r+m-1);for(m=r;m<=k;m++)t+= +n!==m?'<a tabindex="'+e.iTabIndex+'" class="'+B.sPageButton+'">'+e.fnFormatNumber(m)+"</a>":'<a tabindex="'+e.iTabIndex+'" class="'+B.sPageButtonActive+'">'+e.fnFormatNumber(m)+"</a>";m=0;for(k=M.length;m<k;m++)u=M[m],u.hasChildNodes()&&(h("span:eq(0)",u).html(t).children("a").each(L),u=u.getElementsByTagName("a"),u=[u[0],u[1],u[u.length-2],u[u.length-1]],h(u).removeClass(B.sPageButton+" "+B.sPageButtonActive+" "+B.sPageButtonStaticDisabled),h([u[0],u[1]]).addClass(1==n?B.sPageButtonStaticDisabled: +B.sPageButton),h([u[2],u[3]]).addClass(0===l||n===l||-1===e._iDisplayLength?B.sPageButtonStaticDisabled:B.sPageButton))}}}});h.extend(j.ext.oSort,{"string-pre":function(e){"string"!=typeof e&&(e=null!==e&&e.toString?e.toString():"");return e.toLowerCase()},"string-asc":function(e,h){return e<h?-1:e>h?1:0},"string-desc":function(e,h){return e<h?1:e>h?-1:0},"html-pre":function(e){return e.replace(/<.*?>/g,"").toLowerCase()},"html-asc":function(e,h){return e<h?-1:e>h?1:0},"html-desc":function(e,h){return e< +h?1:e>h?-1:0},"date-pre":function(e){e=Date.parse(e);if(isNaN(e)||""===e)e=Date.parse("01/01/1970 00:00:00");return e},"date-asc":function(e,h){return e-h},"date-desc":function(e,h){return h-e},"numeric-pre":function(e){return"-"==e||""===e?0:1*e},"numeric-asc":function(e,h){return e-h},"numeric-desc":function(e,h){return h-e}});h.extend(j.ext.aTypes,[function(e){if("number"===typeof e)return"numeric";if("string"!==typeof e)return null;var 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\ No newline at end of file diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/DataTables.js b/wqflask/wqflask/static/new/packages/DataTables/src/DataTables.js index a72368f8..111e7db8 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/DataTables.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/DataTables.js @@ -1,7 +1,7 @@ /** * @summary DataTables * @description Paginate, search and sort HTML tables - * @version 1.9.2 + * @version 1.9.4 * @file jquery.dataTables.js * @author Allan Jardine (www.sprymedia.co.uk) * @contact www.sprymedia.co.uk/contact @@ -21,9 +21,28 @@ */ /*jslint evil: true, undef: true, browser: true */ -/*globals $, jQuery,_fnExternApiFunc,_fnInitialise,_fnInitComplete,_fnLanguageCompat,_fnAddColumn,_fnColumnOptions,_fnAddData,_fnCreateTr,_fnGatherData,_fnBuildHead,_fnDrawHead,_fnDraw,_fnReDraw,_fnAjaxUpdate,_fnAjaxParameters,_fnAjaxUpdateDraw,_fnServerParams,_fnAddOptionsHtml,_fnFeatureHtmlTable,_fnScrollDraw,_fnAdjustColumnSizing,_fnFeatureHtmlFilter,_fnFilterComplete,_fnFilterCustom,_fnFilterColumn,_fnFilter,_fnBuildSearchArray,_fnBuildSearchRow,_fnFilterCreateSearch,_fnDataToSearch,_fnSort,_fnSortAttachListener,_fnSortingClasses,_fnFeatureHtmlPaginate,_fnPageChange,_fnFeatureHtmlInfo,_fnUpdateInfo,_fnFeatureHtmlLength,_fnFeatureHtmlProcessing,_fnProcessingDisplay,_fnVisibleToColumnIndex,_fnColumnIndexToVisible,_fnNodeToDataIndex,_fnVisbleColumns,_fnCalculateEnd,_fnConvertToWidth,_fnCalculateColumnWidths,_fnScrollingWidthAdjust,_fnGetWidestNode,_fnGetMaxLenString,_fnStringToCss,_fnDetectType,_fnSettingsFromNode,_fnGetDataMaster,_fnGetTrNodes,_fnGetTdNodes,_fnEscapeRegex,_fnDeleteIndex,_fnReOrderIndex,_fnColumnOrdering,_fnLog,_fnClearTable,_fnSaveState,_fnLoadState,_fnCreateCookie,_fnReadCookie,_fnDetectHeader,_fnGetUniqueThs,_fnScrollBarWidth,_fnApplyToChildren,_fnMap,_fnGetRowData,_fnGetCellData,_fnSetCellData,_fnGetObjectDataFn,_fnSetObjectDataFn,_fnApplyColumnDefs,_fnBindAction,_fnCallbackReg,_fnCallbackFire,_fnJsonString,_fnRender,_fnNodeToColumnIndex,_fnInfoMacros*/ +/*globals $, jQuery,define,_fnExternApiFunc,_fnInitialise,_fnInitComplete,_fnLanguageCompat,_fnAddColumn,_fnColumnOptions,_fnAddData,_fnCreateTr,_fnGatherData,_fnBuildHead,_fnDrawHead,_fnDraw,_fnReDraw,_fnAjaxUpdate,_fnAjaxParameters,_fnAjaxUpdateDraw,_fnServerParams,_fnAddOptionsHtml,_fnFeatureHtmlTable,_fnScrollDraw,_fnAdjustColumnSizing,_fnFeatureHtmlFilter,_fnFilterComplete,_fnFilterCustom,_fnFilterColumn,_fnFilter,_fnBuildSearchArray,_fnBuildSearchRow,_fnFilterCreateSearch,_fnDataToSearch,_fnSort,_fnSortAttachListener,_fnSortingClasses,_fnFeatureHtmlPaginate,_fnPageChange,_fnFeatureHtmlInfo,_fnUpdateInfo,_fnFeatureHtmlLength,_fnFeatureHtmlProcessing,_fnProcessingDisplay,_fnVisibleToColumnIndex,_fnColumnIndexToVisible,_fnNodeToDataIndex,_fnVisbleColumns,_fnCalculateEnd,_fnConvertToWidth,_fnCalculateColumnWidths,_fnScrollingWidthAdjust,_fnGetWidestNode,_fnGetMaxLenString,_fnStringToCss,_fnDetectType,_fnSettingsFromNode,_fnGetDataMaster,_fnGetTrNodes,_fnGetTdNodes,_fnEscapeRegex,_fnDeleteIndex,_fnReOrderIndex,_fnColumnOrdering,_fnLog,_fnClearTable,_fnSaveState,_fnLoadState,_fnCreateCookie,_fnReadCookie,_fnDetectHeader,_fnGetUniqueThs,_fnScrollBarWidth,_fnApplyToChildren,_fnMap,_fnGetRowData,_fnGetCellData,_fnSetCellData,_fnGetObjectDataFn,_fnSetObjectDataFn,_fnApplyColumnDefs,_fnBindAction,_fnCallbackReg,_fnCallbackFire,_fnJsonString,_fnRender,_fnNodeToColumnIndex,_fnInfoMacros,_fnBrowserDetect,_fnGetColumns*/ -(/** @lends <global> */function($, window, document, undefined) { +(/** @lends <global> */function( window, document, undefined ) { + +(function( factory ) { + "use strict"; + + // Define as an AMD module if possible + if ( typeof define === 'function' && define.amd ) + { + define( ['jquery'], factory ); + } + /* Define using browser globals otherwise + * Prevent multiple instantiations if the script is loaded twice + */ + else if ( jQuery && !jQuery.fn.dataTable ) + { + factory( jQuery ); + } +} +(/** @lends <global> */function( $ ) { + "use strict"; /** * DataTables is a plug-in for the jQuery Javascript library. It is a * highly flexible tool, based upon the foundations of progressive @@ -78,9 +97,11 @@ require('api.internal.js'); var _that = this; - return this.each(function() { + this.each(function() { require('core.constructor.js'); } ); + _that = null; + return this; }; require('api.static.js'); @@ -93,7 +114,7 @@ * @type string * @default Version number */ - DataTable.version = "1.9.2"; + DataTable.version = "1.9.4"; /** * Private data store, containing all of the settings objects that are created for the @@ -245,6 +266,7 @@ * @event * @param {event} e jQuery event object * @param {object} o DataTables settings object {@link DataTable.models.oSettings} + * @param {object} json JSON returned from the server */ /** @@ -256,4 +278,7 @@ * @param {event} e jQuery event object * @param {object} o DataTables settings object {@link DataTable.models.oSettings} */ -}(jQuery, window, document, undefined)); +})); + +}(window, document)); + diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/api/api.internal.js b/wqflask/wqflask/static/new/packages/DataTables/src/api/api.internal.js index 1cbc8ee1..04a176db 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/api/api.internal.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/api/api.internal.js @@ -1,7 +1,7 @@ /* * This is really a good bit rubbish this method of exposing the internal methods - * publically... - To be fixed in 2.0 using methods on the prototype + * publicly... - To be fixed in 2.0 using methods on the prototype */ @@ -113,7 +113,9 @@ this.oApi = { "_fnJsonString": _fnJsonString, "_fnRender": _fnRender, "_fnNodeToColumnIndex": _fnNodeToColumnIndex, - "_fnInfoMacros": _fnInfoMacros + "_fnInfoMacros": _fnInfoMacros, + "_fnBrowserDetect": _fnBrowserDetect, + "_fnGetColumns": _fnGetColumns }; $.extend( DataTable.ext.oApi, this.oApi ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/api/api.methods.js b/wqflask/wqflask/static/new/packages/DataTables/src/api/api.methods.js index 9e33c3f8..55cd85e3 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/api/api.methods.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/api/api.methods.js @@ -1,5 +1,3 @@ - - /** * Perform a jQuery selector action on the table's TR elements (from the tbody) and * return the resulting jQuery object. @@ -131,11 +129,11 @@ this.$ = function ( sSelector, oOpts ) /** * Almost identical to $ in operation, but in this case returns the data for the matched * rows - as such, the jQuery selector used should match TR row nodes or TD/TH cell nodes - * rather than any decendents, so the data can be obtained for the row/cell. If matching + * rather than any descendants, so the data can be obtained for the row/cell. If matching * rows are found, the data returned is the original data array/object that was used to * create the row (or a generated array if from a DOM source). * - * This method is often useful incombination with $ where both functions are given the + * This method is often useful in-combination with $ where both functions are given the * same parameters and the array indexes will match identically. * @param {string|node|jQuery} sSelector jQuery selector or node collection to act on * @param {object} [oOpts] Optional parameters for modifying the rows to be included @@ -199,8 +197,8 @@ this._ = function ( sSelector, oOpts ) * <ul> * <li>1D array of data - add a single row with the data provided</li> * <li>2D array of arrays - add multiple rows in a single call</li> - * <li>object - data object when using <i>mDataProp</i></li> - * <li>array of objects - multiple data objects when using <i>mDataProp</i></li> + * <li>object - data object when using <i>mData</i></li> + * <li>array of objects - multiple data objects when using <i>mData</i></li> * </ul> * @param {bool} [bRedraw=true] redraw the table or not * @returns {array} An array of integers, representing the list of indexes in @@ -474,20 +472,23 @@ this.fnDestroy = function ( bRemove ) var nBody = oSettings.nTBody; var i, iLen; - bRemove = (bRemove===undefined) ? false : true; + bRemove = (bRemove===undefined) ? false : bRemove; /* Flag to note that the table is currently being destroyed - no action should be taken */ oSettings.bDestroying = true; /* Fire off the destroy callbacks for plug-ins etc */ _fnCallbackFire( oSettings, "aoDestroyCallback", "destroy", [oSettings] ); - - /* Restore hidden columns */ - for ( i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) + + /* If the table is not being removed, restore the hidden columns */ + if ( !bRemove ) { - if ( oSettings.aoColumns[i].bVisible === false ) + for ( i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) { - this.fnSetColumnVis( i, true ); + if ( oSettings.aoColumns[i].bVisible === false ) + { + this.fnSetColumnVis( i, true ); + } } } @@ -563,12 +564,19 @@ this.fnDestroy = function ( bRemove ) oSettings.nTable.style.width = _fnStringToCss(oSettings.sDestroyWidth); } - /* If the were originally odd/even type classes - then we add them back here. Note - * this is not fool proof (for example if not all rows as odd/even classes - but + /* If the were originally stripe classes - then we add them back here. Note + * this is not fool proof (for example if not all rows had stripe classes - but * it's a good effort without getting carried away */ - $(nBody).children('tr:even').addClass( oSettings.asDestroyStripes[0] ); - $(nBody).children('tr:odd').addClass( oSettings.asDestroyStripes[1] ); + iLen = oSettings.asDestroyStripes.length; + if (iLen) + { + var anRows = $(nBody).children('tr'); + for ( i=0 ; i<iLen ; i++ ) + { + anRows.filter(':nth-child(' + iLen + 'n + ' + i + ')').addClass( oSettings.asDestroyStripes[i] ); + } + } /* Remove the settings object from the settings array */ for ( i=0, iLen=DataTable.settings.length ; i<iLen ; i++ ) @@ -581,6 +589,7 @@ this.fnDestroy = function ( bRemove ) /* End it all */ oSettings = null; + oInit = null; }; @@ -674,7 +683,17 @@ this.fnFilter = function( sInput, iColumn, bRegex, bSmart, bShowGlobal, bCaseIns var n = oSettings.aanFeatures.f; for ( var i=0, iLen=n.length ; i<iLen ; i++ ) { - $(n[i]._DT_Input).val( sInput ); + // IE9 throws an 'unknown error' if document.activeElement is used + // inside an iframe or frame... + try { + if ( n[i]._DT_Input != document.activeElement ) + { + $(n[i]._DT_Input).val( sInput ); + } + } + catch ( e ) { + $(n[i]._DT_Input).val( sInput ); + } } } } @@ -794,7 +813,8 @@ this.fnGetNodes = function( iRow ) * and column index including hidden columns * @param {node} nNode this can either be a TR, TD or TH in the table's body * @returns {int} If nNode is given as a TR, then a single index is returned, or - * if given as a cell, an array of [row index, column index (visible)] is given. + * if given as a cell, an array of [row index, column index (visible), + * column index (all)] is given. * @dtopt API * * @example @@ -1168,7 +1188,7 @@ this.fnSortListener = function( nNode, iColumn, fnCallback ) * @param {node|int} mRow TR element you want to update or the aoData index * @param {int} [iColumn] The column to update (not used of mData is an array or object) * @param {bool} [bRedraw=true] Redraw the table or not - * @param {bool} [bAction=true] Perform predraw actions or not + * @param {bool} [bAction=true] Perform pre-draw actions or not * @returns {int} 0 on success, 1 on error * @dtopt API * @@ -1186,30 +1206,26 @@ this.fnUpdate = function( mData, mRow, iColumn, bRedraw, bAction ) var iRow = (typeof mRow === 'object') ? _fnNodeToDataIndex(oSettings, mRow) : mRow; - if ( oSettings.__fnUpdateDeep === undefined && $.isArray(mData) && typeof mData === 'object' ) + if ( $.isArray(mData) && iColumn === undefined ) { /* Array update - update the whole row */ oSettings.aoData[iRow]._aData = mData.slice(); /* Flag to the function that we are recursing */ - oSettings.__fnUpdateDeep = true; for ( i=0 ; i<oSettings.aoColumns.length ; i++ ) { this.fnUpdate( _fnGetCellData( oSettings, iRow, i ), iRow, i, false, false ); } - oSettings.__fnUpdateDeep = undefined; } - else if ( oSettings.__fnUpdateDeep === undefined && mData !== null && typeof mData === 'object' ) + else if ( $.isPlainObject(mData) && iColumn === undefined ) { /* Object update - update the whole row - assume the developer gets the object right */ oSettings.aoData[iRow]._aData = $.extend( true, {}, mData ); - oSettings.__fnUpdateDeep = true; for ( i=0 ; i<oSettings.aoColumns.length ; i++ ) { this.fnUpdate( _fnGetCellData( oSettings, iRow, i ), iRow, i, false, false ); } - oSettings.__fnUpdateDeep = undefined; } else { @@ -1238,8 +1254,10 @@ this.fnUpdate = function( mData, mRow, iColumn, bRedraw, bAction ) * will rebuild the search array - however, the redraw might be disabled by the user) */ var iDisplayIndex = $.inArray( iRow, oSettings.aiDisplay ); - oSettings.asDataSearch[iDisplayIndex] = _fnBuildSearchRow( oSettings, - _fnGetRowData( oSettings, iRow, 'filter' ) ); + oSettings.asDataSearch[iDisplayIndex] = _fnBuildSearchRow( + oSettings, + _fnGetRowData( oSettings, iRow, 'filter', _fnGetColumns( oSettings, 'bSearchable' ) ) + ); /* Perform pre-draw actions */ if ( bAction === undefined || bAction ) diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.ajax.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.ajax.js index f3799f1d..d775feae 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.ajax.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.ajax.js @@ -50,7 +50,7 @@ function _fnAjaxParameters( oSettings ) for ( i=0 ; i<iColumns ; i++ ) { - mDataProp = oSettings.aoColumns[i].mDataProp; + mDataProp = oSettings.aoColumns[i].mData; aoData.push( { "name": "mDataProp_"+i, "value": typeof(mDataProp)==="function" ? 'function' : mDataProp } ); } @@ -100,7 +100,7 @@ function _fnAjaxParameters( oSettings ) /** - * Add Ajax parameters from plugins + * Add Ajax parameters from plug-ins * @param {object} oSettings dataTables settings object * @param array {objects} aoData name/value pairs to send to the server * @memberof DataTable#oApi @@ -127,7 +127,7 @@ function _fnAjaxUpdateDraw ( oSettings, json ) if ( json.sEcho !== undefined ) { /* Protect against old returns over-writing a new one. Possible when you get - * very fast interaction, and later queires are completed much faster + * very fast interaction, and later queries are completed much faster */ if ( json.sEcho*1 < oSettings.iDraw ) { diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.columns.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.columns.js index aef8abe8..b39e6198 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.columns.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.columns.js @@ -16,7 +16,7 @@ function _fnAddColumn( oSettings, nTh ) "nTh": nTh ? nTh : document.createElement('th'), "sTitle": oDefaults.sTitle ? oDefaults.sTitle : nTh ? nTh.innerHTML : '', "aDataSort": oDefaults.aDataSort ? oDefaults.aDataSort : [iCol], - "mDataProp": oDefaults.mDataProp ? oDefaults.oDefaults : iCol + "mData": oDefaults.mData ? oDefaults.oDefaults : iCol } ); oSettings.aoColumns.push( oCol ); @@ -55,7 +55,7 @@ function _fnAddColumn( oSettings, nTh ) * Apply options for a column * @param {object} oSettings dataTables settings object * @param {int} iCol column index to consider - * @param {object} oOptions object with sType, bVisible and bSearchable + * @param {object} oOptions object with sType, bVisible and bSearchable etc * @memberof DataTable#oApi */ function _fnColumnOptions( oSettings, iCol, oOptions ) @@ -65,6 +65,12 @@ function _fnColumnOptions( oSettings, iCol, oOptions ) /* User specified column options */ if ( oOptions !== undefined && oOptions !== null ) { + /* Backwards compatibility for mDataProp */ + if ( oOptions.mDataProp && !oOptions.mData ) + { + oOptions.mData = oOptions.mDataProp; + } + if ( oOptions.sType !== undefined ) { oCol.sType = oOptions.sType; @@ -85,8 +91,19 @@ function _fnColumnOptions( oSettings, iCol, oOptions ) } /* Cache the data get and set functions for speed */ - oCol.fnGetData = _fnGetObjectDataFn( oCol.mDataProp ); - oCol.fnSetData = _fnSetObjectDataFn( oCol.mDataProp ); + var mRender = oCol.mRender ? _fnGetObjectDataFn( oCol.mRender ) : null; + var mData = _fnGetObjectDataFn( oCol.mData ); + + oCol.fnGetData = function (oData, sSpecific) { + var innerData = mData( oData, sSpecific ); + + if ( oCol.mRender && (sSpecific && sSpecific !== '') ) + { + return mRender( innerData, sSpecific, oData ); + } + return innerData; + }; + oCol.fnSetData = _fnSetObjectDataFn( oCol.mData ); /* Feature sorting overrides column specific when off */ if ( !oSettings.oFeatures.bSort ) @@ -101,11 +118,10 @@ function _fnColumnOptions( oSettings, iCol, oOptions ) oCol.sSortingClass = oSettings.oClasses.sSortableNone; oCol.sSortingClassJUI = ""; } - else if ( oCol.bSortable || - ($.inArray('asc', oCol.asSorting) == -1 && $.inArray('desc', oCol.asSorting) == -1) ) + else if ( $.inArray('asc', oCol.asSorting) == -1 && $.inArray('desc', oCol.asSorting) == -1 ) { - oCol.sSortingClass = oSettings.oClasses.sSortable; - oCol.sSortingClassJUI = oSettings.oClasses.sSortJUI; + oCol.sSortingClass = oSettings.oClasses.sSortable; + oCol.sSortingClassJUI = oSettings.oClasses.sSortJUI; } else if ( $.inArray('asc', oCol.asSorting) != -1 && $.inArray('desc', oCol.asSorting) == -1 ) { @@ -128,7 +144,7 @@ function _fnColumnOptions( oSettings, iCol, oOptions ) */ function _fnAdjustColumnSizing ( oSettings ) { - /* Not interested in doing column width calculation if autowidth is disabled */ + /* Not interested in doing column width calculation if auto-width is disabled */ if ( oSettings.oFeatures.bAutoWidth === false ) { return false; @@ -152,22 +168,11 @@ function _fnAdjustColumnSizing ( oSettings ) */ function _fnVisibleToColumnIndex( oSettings, iMatch ) { - var iColumn = -1; - - for ( var i=0 ; i<oSettings.aoColumns.length ; i++ ) - { - if ( oSettings.aoColumns[i].bVisible === true ) - { - iColumn++; - } - - if ( iColumn == iMatch ) - { - return i; - } - } - - return null; + var aiVis = _fnGetColumns( oSettings, 'bVisible' ); + + return typeof aiVis[iMatch] === 'number' ? + aiVis[iMatch] : + null; } @@ -181,41 +186,44 @@ function _fnVisibleToColumnIndex( oSettings, iMatch ) */ function _fnColumnIndexToVisible( oSettings, iMatch ) { - var iVisible = -1; - for ( var i=0 ; i<oSettings.aoColumns.length ; i++ ) - { - if ( oSettings.aoColumns[i].bVisible === true ) - { - iVisible++; - } - - if ( i == iMatch ) - { - return oSettings.aoColumns[i].bVisible === true ? iVisible : null; - } - } - - return null; + var aiVis = _fnGetColumns( oSettings, 'bVisible' ); + var iPos = $.inArray( iMatch, aiVis ); + + return iPos !== -1 ? iPos : null; } /** * Get the number of visible columns + * @param {object} oSettings dataTables settings object * @returns {int} i the number of visible columns - * @param {object} oS dataTables settings object * @memberof DataTable#oApi */ -function _fnVisbleColumns( oS ) +function _fnVisbleColumns( oSettings ) { - var iVis = 0; - for ( var i=0 ; i<oS.aoColumns.length ; i++ ) - { - if ( oS.aoColumns[i].bVisible === true ) - { - iVis++; + return _fnGetColumns( oSettings, 'bVisible' ).length; +} + + +/** + * Get an array of column indexes that match a given property + * @param {object} oSettings dataTables settings object + * @param {string} sParam Parameter in aoColumns to look for - typically + * bVisible or bSearchable + * @returns {array} Array of indexes with matched properties + * @memberof DataTable#oApi + */ +function _fnGetColumns( oSettings, sParam ) +{ + var a = []; + + $.map( oSettings.aoColumns, function(val, i) { + if ( val[sParam] ) { + a.push( i ); } - } - return iVis; + } ); + + return a; } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.constructor.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.constructor.js index ed0756d9..8af48d54 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.constructor.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.constructor.js @@ -1,4 +1,3 @@ - var i=0, iLen, j, jLen, k, kLen; var sId = this.getAttribute( 'id' ); var bInitHandedOff = false; @@ -240,42 +239,29 @@ if ( oInit.asStripeClasses === null ) } /* Remove row stripe classes if they are already on the table row */ -var bStripeRemove = false; -var anRows = $(this).children('tbody').children('tr'); -for ( i=0, iLen=oSettings.asStripeClasses.length ; i<iLen ; i++ ) -{ - if ( anRows.filter(":lt(2)").hasClass( oSettings.asStripeClasses[i]) ) - { - bStripeRemove = true; - break; - } -} - -if ( bStripeRemove ) +iLen=oSettings.asStripeClasses.length; +oSettings.asDestroyStripes = []; +if (iLen) { - /* Store the classes which we are about to remove so they can be readded on destroy */ - oSettings.asDestroyStripes = [ '', '' ]; - if ( $(anRows[0]).hasClass(oSettings.oClasses.sStripeOdd) ) - { - oSettings.asDestroyStripes[0] += oSettings.oClasses.sStripeOdd+" "; - } - if ( $(anRows[0]).hasClass(oSettings.oClasses.sStripeEven) ) + var bStripeRemove = false; + var anRows = $(this).children('tbody').children('tr:lt(' + iLen + ')'); + for ( i=0 ; i<iLen ; i++ ) { - oSettings.asDestroyStripes[0] += oSettings.oClasses.sStripeEven; - } - if ( $(anRows[1]).hasClass(oSettings.oClasses.sStripeOdd) ) - { - oSettings.asDestroyStripes[1] += oSettings.oClasses.sStripeOdd+" "; + if ( anRows.hasClass( oSettings.asStripeClasses[i] ) ) + { + bStripeRemove = true; + + /* Store the classes which we are about to remove so they can be re-added on destroy */ + oSettings.asDestroyStripes.push( oSettings.asStripeClasses[i] ); + } } - if ( $(anRows[1]).hasClass(oSettings.oClasses.sStripeEven) ) + + if ( bStripeRemove ) { - oSettings.asDestroyStripes[1] += oSettings.oClasses.sStripeEven; + anRows.removeClass( oSettings.asStripeClasses.join(' ') ); } - - anRows.removeClass( oSettings.asStripeClasses.join(' ') ); } - /* * Columns * See if we should load columns automatically or use defined ones @@ -371,6 +357,9 @@ _fnSortingClasses( oSettings ); * Cache the header, body and footer as required, creating them if needed */ +/* Browser support detection */ +_fnBrowserDetect( oSettings ); + // Work around for Webkit bug 83867 - store the caption-side before removing from doc var captions = $(this).children('caption').each( function () { this._captionSide = $(this).css('caption-side'); diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.data.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.data.js index 64529dbb..7fce2383 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.data.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.data.js @@ -1,5 +1,3 @@ - - /** * Add a data array to the table, creating DOM node etc. This is the parallel to * _fnGatherData, but for adding rows from a Javascript source, rather than a @@ -30,8 +28,8 @@ function _fnAddData ( oSettings, aDataSupplied ) { oCol = oSettings.aoColumns[i]; - /* Use rendered data for filtering/sorting */ - if ( typeof oCol.fnRender === 'function' && oCol.bUseRendered && oCol.mDataProp !== null ) + /* Use rendered data for filtering / sorting */ + if ( typeof oCol.fnRender === 'function' && oCol.bUseRendered && oCol.mData !== null ) { _fnSetCellData( oSettings, iRow, i, _fnRender(oSettings, iRow, i) ); } @@ -64,7 +62,7 @@ function _fnAddData ( oSettings, aDataSupplied ) /* Add to the display array */ oSettings.aiDisplayMaster.push( iRow ); - /* Create the DOM imformation */ + /* Create the DOM information */ if ( !oSettings.oFeatures.bDeferRender ) { _fnCreateTr( oSettings, iRow ); @@ -82,7 +80,7 @@ function _fnAddData ( oSettings, aDataSupplied ) function _fnGatherData( oSettings ) { var iLoop, i, iLen, j, jLen, jInner, - nTds, nTrs, nTd, aLocalData, iThisIndex, + nTds, nTrs, nTd, nTr, aLocalData, iThisIndex, iRow, iRows, iColumn, iColumns, sNodeName, oCol, oData; @@ -93,31 +91,32 @@ function _fnGatherData( oSettings ) */ if ( oSettings.bDeferLoading || oSettings.sAjaxSource === null ) { - nTrs = oSettings.nTBody.childNodes; - for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) + nTr = oSettings.nTBody.firstChild; + while ( nTr ) { - if ( nTrs[i].nodeName.toUpperCase() == "TR" ) + if ( nTr.nodeName.toUpperCase() == "TR" ) { iThisIndex = oSettings.aoData.length; - nTrs[i]._DT_RowIndex = iThisIndex; + nTr._DT_RowIndex = iThisIndex; oSettings.aoData.push( $.extend( true, {}, DataTable.models.oRow, { - "nTr": nTrs[i] + "nTr": nTr } ) ); - + oSettings.aiDisplayMaster.push( iThisIndex ); - nTds = nTrs[i].childNodes; + nTd = nTr.firstChild; jInner = 0; - - for ( j=0, jLen=nTds.length ; j<jLen ; j++ ) + while ( nTd ) { - sNodeName = nTds[j].nodeName.toUpperCase(); + sNodeName = nTd.nodeName.toUpperCase(); if ( sNodeName == "TD" || sNodeName == "TH" ) { - _fnSetCellData( oSettings, iThisIndex, jInner, $.trim(nTds[j].innerHTML) ); + _fnSetCellData( oSettings, iThisIndex, jInner, $.trim(nTd.innerHTML) ); jInner++; } + nTd = nTd.nextSibling; } } + nTr = nTr.nextSibling; } } @@ -129,14 +128,15 @@ function _fnGatherData( oSettings ) nTds = []; for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { - for ( j=0, jLen=nTrs[i].childNodes.length ; j<jLen ; j++ ) + nTd = nTrs[i].firstChild; + while ( nTd ) { - nTd = nTrs[i].childNodes[j]; sNodeName = nTd.nodeName.toUpperCase(); if ( sNodeName == "TD" || sNodeName == "TH" ) { nTds.push( nTd ); } + nTd = nTd.nextSibling; } } @@ -186,8 +186,16 @@ function _fnGatherData( oSettings ) } } - if ( typeof oCol.mDataProp === 'function' ) + if ( oCol.mRender ) { + // mRender has been defined, so we need to get the value and set it + nCell.innerHTML = _fnGetCellData( oSettings, iRow, iColumn, 'display' ); + } + else if ( oCol.mData !== iColumn ) + { + // If mData is not the same as the column number, then we need to + // get the dev set value. If it is the column, no point in wasting + // time setting the value that is already there! nCell.innerHTML = _fnGetCellData( oSettings, iRow, iColumn, 'display' ); } @@ -198,7 +206,7 @@ function _fnGatherData( oSettings ) nCell.innerHTML = sRendered; if ( oCol.bUseRendered ) { - /* Use the rendered data for filtering/sorting */ + /* Use the rendered data for filtering / sorting */ _fnSetCellData( oSettings, iRow, iColumn, sRendered ); } } @@ -209,7 +217,7 @@ function _fnGatherData( oSettings ) nCell.className += ' '+oCol.sClass; } - /* Column visability */ + /* Column visibility */ if ( !bVisible ) { oData._anHidden[iColumn] = nCell; @@ -283,15 +291,16 @@ function _fnNodeToColumnIndex( oSettings, iRow, n ) * @param {object} oSettings dataTables settings object * @param {int} iRow aoData row id * @param {string} sSpecific data get type ('type' 'filter' 'sort') + * @param {array} aiColumns Array of column indexes to get data from * @returns {array} Data array * @memberof DataTable#oApi */ -function _fnGetRowData( oSettings, iRow, sSpecific ) +function _fnGetRowData( oSettings, iRow, sSpecific, aiColumns ) { var out = []; - for ( var i=0, iLen=oSettings.aoColumns.length ; i<iLen ; i++ ) + for ( var i=0, iLen=aiColumns.length ; i<iLen ; i++ ) { - out.push( _fnGetCellData( oSettings, iRow, i, sSpecific ) ); + out.push( _fnGetCellData( oSettings, iRow, aiColumns[i], sSpecific ) ); } return out; } @@ -317,7 +326,7 @@ function _fnGetCellData( oSettings, iRow, iCol, sSpecific ) if ( oSettings.iDrawError != oSettings.iDraw && oCol.sDefaultContent === null ) { _fnLog( oSettings, 0, "Requested unknown parameter "+ - (typeof oCol.mDataProp=='function' ? '{mDataprop function}' : "'"+oCol.mDataProp+"'")+ + (typeof oCol.mData=='function' ? '{mData function}' : "'"+oCol.mData+"'")+ " from the data source for row "+iRow ); oSettings.iDrawError = oSettings.iDraw; } @@ -360,6 +369,9 @@ function _fnSetCellData( oSettings, iRow, iCol, val ) } +// Private variable that is used to match array syntax in the data property object +var __reArray = /\[.*?\]$/; + /** * Return a function that can be used to get data from a source object, taking * into account the ability to use nested objects as a source @@ -378,30 +390,71 @@ function _fnGetObjectDataFn( mSource ) } else if ( typeof mSource === 'function' ) { - return function (data, type) { - return mSource( data, type ); + return function (data, type, extra) { + return mSource( data, type, extra ); }; } - else if ( typeof mSource === 'string' && mSource.indexOf('.') != -1 ) + else if ( typeof mSource === 'string' && (mSource.indexOf('.') !== -1 || mSource.indexOf('[') !== -1) ) { /* If there is a . in the source string then the data source is in a * nested object so we loop over the data for each level to get the next - * level down. On each loop we test for undefined, and if found immediatly + * level down. On each loop we test for undefined, and if found immediately * return. This allows entire objects to be missing and sDefaultContent to * be used if defined, rather than throwing an error */ - var a = mSource.split('.'); - return function (data, type) { - for ( var i=0, iLen=a.length ; i<iLen ; i++ ) + var fetchData = function (data, type, src) { + var a = src.split('.'); + var arrayNotation, out, innerSrc; + + if ( src !== "" ) { - data = data[ a[i] ]; - if ( data === undefined ) + for ( var i=0, iLen=a.length ; i<iLen ; i++ ) { - return undefined; + // Check if we are dealing with an array notation request + arrayNotation = a[i].match(__reArray); + + if ( arrayNotation ) { + a[i] = a[i].replace(__reArray, ''); + + // Condition allows simply [] to be passed in + if ( a[i] !== "" ) { + data = data[ a[i] ]; + } + out = []; + + // Get the remainder of the nested object to get + a.splice( 0, i+1 ); + innerSrc = a.join('.'); + + // Traverse each entry in the array getting the properties requested + for ( var j=0, jLen=data.length ; j<jLen ; j++ ) { + out.push( fetchData( data[j], type, innerSrc ) ); + } + + // If a string is given in between the array notation indicators, that + // is used to join the strings together, otherwise an array is returned + var join = arrayNotation[0].substring(1, arrayNotation[0].length-1); + data = (join==="") ? out : out.join(join); + + // The inner call to fetchData has already traversed through the remainder + // of the source requested, so we exit from the loop + break; + } + + if ( data === null || data[ a[i] ] === undefined ) + { + return undefined; + } + data = data[ a[i] ]; } } + return data; }; + + return function (data, type) { + return fetchData( data, type, mSource ); + }; } else { @@ -433,22 +486,57 @@ function _fnSetObjectDataFn( mSource ) mSource( data, 'set', val ); }; } - else if ( typeof mSource === 'string' && mSource.indexOf('.') != -1 ) + else if ( typeof mSource === 'string' && (mSource.indexOf('.') !== -1 || mSource.indexOf('[') !== -1) ) { - /* Like the get, we need to get data from a nested object. */ - var a = mSource.split('.'); - return function (data, val) { + /* Like the get, we need to get data from a nested object */ + var setData = function (data, val, src) { + var a = src.split('.'), b; + var arrayNotation, o, innerSrc; + for ( var i=0, iLen=a.length-1 ; i<iLen ; i++ ) { + // Check if we are dealing with an array notation request + arrayNotation = a[i].match(__reArray); + + if ( arrayNotation ) + { + a[i] = a[i].replace(__reArray, ''); + data[ a[i] ] = []; + + // Get the remainder of the nested object to set so we can recurse + b = a.slice(); + b.splice( 0, i+1 ); + innerSrc = b.join('.'); + + // Traverse each entry in the array setting the properties requested + for ( var j=0, jLen=val.length ; j<jLen ; j++ ) + { + o = {}; + setData( o, val[j], innerSrc ); + data[ a[i] ].push( o ); + } + + // The inner call to setData has already traversed through the remainder + // of the source and has set the data, thus we can exit here + return; + } + // If the nested object doesn't currently exist - since we are // trying to set the value - create it - if ( data[ a[i] ] === undefined ) + if ( data[ a[i] ] === null || data[ a[i] ] === undefined ) { data[ a[i] ] = {}; } data = data[ a[i] ]; } - data[ a[a.length-1] ] = val; + + // If array notation is used, we just want to strip it and use the property name + // and assign the value. If it isn't used, then we get the result we want anyway + data[ a[a.length-1].replace(__reArray, '') ] = val; + }; + + return function (data, val) { + return setData( data, val, mSource ); }; } else @@ -541,6 +629,6 @@ function _fnRender( oSettings, iRow, iCol ) "iDataColumn": iCol, "oSettings": oSettings, "aData": oSettings.aoData[iRow]._aData, - "mDataProp": oCol.mDataProp + "mDataProp": oCol.mData }, _fnGetCellData(oSettings, iRow, iCol, 'display') ); } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.draw.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.draw.js index e945b093..04ee2a5d 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.draw.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.draw.js @@ -1,4 +1,3 @@ - /** * Create a new TR element (and it's TD children) for a row * @param {object} oSettings dataTables settings object @@ -27,7 +26,7 @@ function _fnCreateTr ( oSettings, iRow ) if ( oData._aData.DT_RowClass ) { - $(oData.nTr).addClass( oData._aData.DT_RowClass ); + oData.nTr.className = oData._aData.DT_RowClass; } /* Process each column */ @@ -39,7 +38,7 @@ function _fnCreateTr ( oSettings, iRow ) /* Render if needed - if bUseRendered is true then we already have the rendered * value in the data source - so can just use that */ - nTd.innerHTML = (typeof oCol.fnRender === 'function' && (!oCol.bUseRendered || oCol.mDataProp === null)) ? + nTd.innerHTML = (typeof oCol.fnRender === 'function' && (!oCol.bUseRendered || oCol.mData === null)) ? _fnRender( oSettings, iRow, i ) : _fnGetCellData( oSettings, iRow, i, 'display' ); @@ -80,7 +79,7 @@ function _fnCreateTr ( oSettings, iRow ) function _fnBuildHead( oSettings ) { var i, nTh, iLen, j, jLen; - var iThs = oSettings.nTHead.getElementsByTagName('th').length; + var iThs = $('th, td', oSettings.nTHead).length; var iCorrector = 0; var jqChildren; @@ -379,7 +378,7 @@ function _fnDraw( oSettings ) } } - /* Row callback functions - might want to manipule the row */ + /* Row callback functions - might want to manipulate the row */ _fnCallbackFire( oSettings, 'aoRowCallback', null, [nRow, oSettings.aoData[ oSettings.aiDisplay[j] ]._aData, iRowCount, j] ); @@ -691,10 +690,12 @@ function _fnAddOptionsHtml ( oSettings ) function _fnDetectHeader ( aLayout, nThead ) { var nTrs = $(nThead).children('tr'); - var nCell; - var i, j, k, l, iLen, jLen, iColShifted; + var nTr, nCell; + var i, k, l, iLen, jLen, iColShifted, iColumn, iColspan, iRowspan; + var bUnique; var fnShiftCol = function ( a, i, j ) { - while ( a[i][j] ) { + var k = a[i]; + while ( k[j] ) { j++; } return j; @@ -711,19 +712,18 @@ function _fnDetectHeader ( aLayout, nThead ) /* Calculate a layout array */ for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { - var iColumn = 0; + nTr = nTrs[i]; + iColumn = 0; /* For every cell in the row... */ - for ( j=0, jLen=nTrs[i].childNodes.length ; j<jLen ; j++ ) - { - nCell = nTrs[i].childNodes[j]; - + nCell = nTr.firstChild; + while ( nCell ) { if ( nCell.nodeName.toUpperCase() == "TD" || nCell.nodeName.toUpperCase() == "TH" ) { /* Get the col and rowspan attributes from the DOM and sanitise them */ - var iColspan = nCell.getAttribute('colspan') * 1; - var iRowspan = nCell.getAttribute('rowspan') * 1; + iColspan = nCell.getAttribute('colspan') * 1; + iRowspan = nCell.getAttribute('rowspan') * 1; iColspan = (!iColspan || iColspan===0 || iColspan===1) ? 1 : iColspan; iRowspan = (!iRowspan || iRowspan===0 || iRowspan===1) ? 1 : iRowspan; @@ -732,6 +732,9 @@ function _fnDetectHeader ( aLayout, nThead ) */ iColShifted = fnShiftCol( aLayout, i, iColumn ); + /* Cache calculation for unique columns */ + bUnique = iColspan === 1 ? true : false; + /* If there is col / rowspan, copy the information into the layout grid */ for ( l=0 ; l<iColspan ; l++ ) { @@ -739,12 +742,13 @@ function _fnDetectHeader ( aLayout, nThead ) { aLayout[i+k][iColShifted+l] = { "cell": nCell, - "unique": iColspan == 1 ? true : false + "unique": bUnique }; - aLayout[i+k].nTr = nTrs[i]; + aLayout[i+k].nTr = nTr; } } } + nCell = nCell.nextSibling; } } } @@ -755,7 +759,7 @@ function _fnDetectHeader ( aLayout, nThead ) * @param {object} oSettings dataTables settings object * @param {node} nHeader automatically detect the layout from this node - optional * @param {array} aLayout thead/tfoot layout from _fnDetectHeader - optional - * @returns array {node} aReturn list of unique ths + * @returns array {node} aReturn list of unique th's * @memberof DataTable#oApi */ function _fnGetUniqueThs ( oSettings, nHeader, aLayout ) diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.filter.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.filter.js index 846618cf..c6c47e9a 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.filter.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.filter.js @@ -133,15 +133,22 @@ function _fnFilterComplete ( oSettings, oInput, iForce ) function _fnFilterCustom( oSettings ) { var afnFilters = DataTable.ext.afnFiltering; + var aiFilterColumns = _fnGetColumns( oSettings, 'bSearchable' ); + for ( var i=0, iLen=afnFilters.length ; i<iLen ; i++ ) { var iCorrector = 0; for ( var j=0, jLen=oSettings.aiDisplay.length ; j<jLen ; j++ ) { var iDisIndex = oSettings.aiDisplay[j-iCorrector]; + var bTest = afnFilters[i]( + oSettings, + _fnGetRowData( oSettings, iDisIndex, 'filter', aiFilterColumns ), + iDisIndex + ); /* Check if we should use this row based on the filtering function */ - if ( !afnFilters[i]( oSettings, _fnGetRowData( oSettings, iDisIndex, 'filter' ), iDisIndex ) ) + if ( !bTest ) { oSettings.aiDisplay.splice( j-iCorrector, 1 ); iCorrector++; @@ -280,15 +287,19 @@ function _fnBuildSearchArray ( oSettings, iMaster ) if ( !oSettings.oFeatures.bServerSide ) { /* Clear out the old data */ - oSettings.asDataSearch.splice( 0, oSettings.asDataSearch.length ); - - var aArray = (iMaster && iMaster===1) ? - oSettings.aiDisplayMaster : oSettings.aiDisplay; + oSettings.asDataSearch = []; + + var aiFilterColumns = _fnGetColumns( oSettings, 'bSearchable' ); + var aiIndex = (iMaster===1) ? + oSettings.aiDisplayMaster : + oSettings.aiDisplay; - for ( var i=0, iLen=aArray.length ; i<iLen ; i++ ) + for ( var i=0, iLen=aiIndex.length ; i<iLen ; i++ ) { - oSettings.asDataSearch[i] = _fnBuildSearchRow( oSettings, - _fnGetRowData( oSettings, aArray[i], 'filter' ) ); + oSettings.asDataSearch[i] = _fnBuildSearchRow( + oSettings, + _fnGetRowData( oSettings, aiIndex[i], 'filter', aiFilterColumns ) + ); } } } @@ -302,33 +313,16 @@ function _fnBuildSearchArray ( oSettings, iMaster ) */ function _fnBuildSearchRow( oSettings, aData ) { - var sSearch = ''; - if ( oSettings.__nTmpFilter === undefined ) - { - oSettings.__nTmpFilter = document.createElement('div'); - } - var nTmp = oSettings.__nTmpFilter; - - for ( var j=0, jLen=oSettings.aoColumns.length ; j<jLen ; j++ ) - { - if ( oSettings.aoColumns[j].bSearchable ) - { - var sData = aData[j]; - sSearch += _fnDataToSearch( sData, oSettings.aoColumns[j].sType )+' '; - } - } + var sSearch = aData.join(' '); /* If it looks like there is an HTML entity in the string, attempt to decode it */ if ( sSearch.indexOf('&') !== -1 ) { - nTmp.innerHTML = sSearch; - sSearch = nTmp.textContent ? nTmp.textContent : nTmp.innerText; - - /* IE and Opera appear to put an newline where there is a <br> tag - remove it */ - sSearch = sSearch.replace(/\n/g," ").replace(/\r/g,""); + sSearch = $('<div>').html(sSearch).text(); } - return sSearch; + // Strip newline characters + return sSearch.replace( /[\n\r]/g, " " ); } /** @@ -336,7 +330,7 @@ function _fnBuildSearchRow( oSettings, aData ) * @param {string} sSearch string to search for * @param {bool} bRegex treat as a regular expression or not * @param {bool} bSmart perform smart filtering or not - * @param {bool} bCaseInsensitive Do case insenstive matching or not + * @param {bool} bCaseInsensitive Do case insensitive matching or not * @returns {RegExp} constructed object * @memberof DataTable#oApi */ @@ -391,7 +385,7 @@ function _fnDataToSearch ( sData, sType ) /** - * scape a string stuch that it can be used in a regular expression + * scape a string such that it can be used in a regular expression * @param {string} sVal string to escape * @returns {string} escaped string * @memberof DataTable#oApi diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.info.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.info.js index da8f35f3..1e95b35b 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.info.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.info.js @@ -1,5 +1,4 @@ - /** * Generate the node required for the info display * @param {object} oSettings dataTables settings object @@ -50,25 +49,20 @@ function _fnUpdateInfo ( oSettings ) iTotal = oSettings.fnRecordsDisplay(), sOut; - if ( iTotal === 0 && iTotal == iMax ) + if ( iTotal === 0 ) { /* Empty record set */ sOut = oLang.sInfoEmpty; } - else if ( iTotal === 0 ) - { - /* Empty record set after filtering */ - sOut = oLang.sInfoEmpty +' '+ oLang.sInfoFiltered; - } - else if ( iTotal == iMax ) - { + else { /* Normal record set */ sOut = oLang.sInfo; } - else + + if ( iTotal != iMax ) { /* Record set after filtering */ - sOut = oLang.sInfo +' '+ oLang.sInfoFiltered; + sOut += ' ' + oLang.sInfoFiltered; } // Convert the macros @@ -109,9 +103,9 @@ function _fnInfoMacros ( oSettings, str ) } return str. - replace('_START_', sStart). - replace('_END_', sEnd). - replace('_TOTAL_', sTotal). - replace('_MAX_', sMax); + replace(/_START_/g, sStart). + replace(/_END_/g, sEnd). + replace(/_TOTAL_/g, sTotal). + replace(/_MAX_/g, sMax); } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.length.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.length.js index ecdb46bb..60c58040 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.length.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.length.js @@ -93,7 +93,7 @@ function _fnFeatureHtmlLength ( oSettings ) /** - * Rcalculate the end point based on the start point + * Recalculate the end point based on the start point * @param {object} oSettings dataTables settings object * @memberof DataTable#oApi */ diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.page.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.page.js index c652da8c..4699768c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.page.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.page.js @@ -75,7 +75,7 @@ function _fnPageChange ( oSettings, mAction ) oSettings._iDisplayStart - oSettings._iDisplayLength : 0; - /* Correct for underrun */ + /* Correct for under-run */ if ( oSettings._iDisplayStart < 0 ) { oSettings._iDisplayStart = 0; diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.scrolling.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.scrolling.js index 1889fd9f..a5547b5c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.scrolling.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.scrolling.js @@ -1,5 +1,3 @@ - - /** * Add any control elements for the table - specifically scrolling * @param {object} oSettings dataTables settings object @@ -108,7 +106,7 @@ function _fnFeatureHtmlTable ( oSettings ) /* * Sizing */ - /* When xscrolling add the width and a scroller to move the header with the body */ + /* When x-scrolling add the width and a scroller to move the header with the body */ if ( oSettings.oScroll.sX !== "" ) { nScrollHead.style.width = _fnStringToCss( oSettings.oScroll.sX ); @@ -191,10 +189,18 @@ function _fnScrollDraw ( o ) nScrollBody = o.nTable.parentNode, i, iLen, j, jLen, anHeadToSize, anHeadSizers, anFootSizers, anFootToSize, oStyle, iVis, nTheadSize, nTfootSize, - iWidth, aApplied=[], iSanityWidth, + iWidth, aApplied=[], aAppliedFooter=[], iSanityWidth, nScrollFootInner = (o.nTFoot !== null) ? o.nScrollFoot.getElementsByTagName('div')[0] : null, nScrollFootTable = (o.nTFoot !== null) ? nScrollFootInner.getElementsByTagName('table')[0] : null, - ie67 = $.browser.msie && $.browser.version <= 7; + ie67 = o.oBrowser.bScrollOversize, + zeroOut = function(nSizer) { + oStyle = nSizer.style; + oStyle.paddingTop = "0"; + oStyle.paddingBottom = "0"; + oStyle.borderTopWidth = "0"; + oStyle.borderBottomWidth = "0"; + oStyle.height = 0; + }; /* * 1. Re-create the table inside the scrolling div @@ -206,11 +212,15 @@ function _fnScrollDraw ( o ) /* Clone the current header and footer elements and then place it into the inner table */ nTheadSize = $(o.nTHead).clone()[0]; o.nTable.insertBefore( nTheadSize, o.nTable.childNodes[0] ); + anHeadToSize = o.nTHead.getElementsByTagName('tr'); + anHeadSizers = nTheadSize.getElementsByTagName('tr'); if ( o.nTFoot !== null ) { nTfootSize = $(o.nTFoot).clone()[0]; o.nTable.insertBefore( nTfootSize, o.nTable.childNodes[1] ); + anFootToSize = o.nTFoot.getElementsByTagName('tr'); + anFootSizers = nTfootSize.getElementsByTagName('tr'); } /* @@ -219,7 +229,7 @@ function _fnScrollDraw ( o ) /* Remove old sizing and apply the calculated column widths * Get the unique column headers in the newly created (cloned) header. We want to apply the - * calclated sizes to this header + * calculated sizes to this header */ if ( o.oScroll.sX === "" ) { @@ -238,7 +248,7 @@ function _fnScrollDraw ( o ) { _fnApplyToChildren( function(n) { n.style.width = ""; - }, nTfootSize.getElementsByTagName('tr') ); + }, anFootSizers ); } // If scroll collapse is enabled, when we put the headers back into the body for sizing, we @@ -300,41 +310,38 @@ function _fnScrollDraw ( o ) /* We want the hidden header to have zero height, so remove padding and borders. Then * set the width based on the real headers */ - anHeadToSize = o.nTHead.getElementsByTagName('tr'); - anHeadSizers = nTheadSize.getElementsByTagName('tr'); - _fnApplyToChildren( function(nSizer, nToSize) { - oStyle = nSizer.style; - oStyle.paddingTop = "0"; - oStyle.paddingBottom = "0"; - oStyle.borderTopWidth = "0"; - oStyle.borderBottomWidth = "0"; - oStyle.height = 0; - - iWidth = $(nSizer).width(); - nToSize.style.width = _fnStringToCss( iWidth ); - aApplied.push( iWidth ); - }, anHeadSizers, anHeadToSize ); + // Apply all styles in one pass. Invalidates layout only once because we don't read any + // DOM properties. + _fnApplyToChildren( zeroOut, anHeadSizers ); + + // Read all widths in next pass. Forces layout only once because we do not change + // any DOM properties. + _fnApplyToChildren( function(nSizer) { + aApplied.push( _fnStringToCss( $(nSizer).width() ) ); + }, anHeadSizers ); + + // Apply all widths in final pass. Invalidates layout only once because we do not + // read any DOM properties. + _fnApplyToChildren( function(nToSize, i) { + nToSize.style.width = aApplied[i]; + }, anHeadToSize ); + $(anHeadSizers).height(0); + /* Same again with the footer if we have one */ if ( o.nTFoot !== null ) { - /* Clone the current footer and then place it into the body table as a "hidden header" */ - anFootSizers = nTfootSize.getElementsByTagName('tr'); - anFootToSize = o.nTFoot.getElementsByTagName('tr'); - - _fnApplyToChildren( function(nSizer, nToSize) { - oStyle = nSizer.style; - oStyle.paddingTop = "0"; - oStyle.paddingBottom = "0"; - oStyle.borderTopWidth = "0"; - oStyle.borderBottomWidth = "0"; - oStyle.height = 0; - - iWidth = $(nSizer).width(); - nToSize.style.width = _fnStringToCss( iWidth ); - aApplied.push( iWidth ); - }, anFootSizers, anFootToSize ); + _fnApplyToChildren( zeroOut, anFootSizers ); + + _fnApplyToChildren( function(nSizer) { + aAppliedFooter.push( _fnStringToCss( $(nSizer).width() ) ); + }, anFootSizers ); + + _fnApplyToChildren( function(nToSize, i) { + nToSize.style.width = aAppliedFooter[i]; + }, anFootToSize ); + $(anFootSizers).height(0); } @@ -345,16 +352,16 @@ function _fnScrollDraw ( o ) /* "Hide" the header and footer that we used for the sizing. We want to also fix their width * to what they currently are */ - _fnApplyToChildren( function(nSizer) { + _fnApplyToChildren( function(nSizer, i) { nSizer.innerHTML = ""; - nSizer.style.width = _fnStringToCss( aApplied.shift() ); + nSizer.style.width = aApplied[i]; }, anHeadSizers ); if ( o.nTFoot !== null ) { - _fnApplyToChildren( function(nSizer) { + _fnApplyToChildren( function(nSizer, i) { nSizer.innerHTML = ""; - nSizer.style.width = _fnStringToCss( aApplied.shift() ); + nSizer.style.width = aAppliedFooter[i]; }, anFootSizers ); } @@ -377,11 +384,11 @@ function _fnScrollDraw ( o ) /* Apply the calculated minimum width to the table wrappers */ nScrollBody.style.width = _fnStringToCss( iCorrection ); - nScrollHeadInner.parentNode.style.width = _fnStringToCss( iCorrection ); + o.nScrollHead.style.width = _fnStringToCss( iCorrection ); if ( o.nTFoot !== null ) { - nScrollFootInner.parentNode.style.width = _fnStringToCss( iCorrection ); + o.nScrollFoot.style.width = _fnStringToCss( iCorrection ); } /* And give the user a warning that we've stopped the table getting too small */ @@ -400,11 +407,11 @@ function _fnScrollDraw ( o ) else { nScrollBody.style.width = _fnStringToCss( '100%' ); - nScrollHeadInner.parentNode.style.width = _fnStringToCss( '100%' ); + o.nScrollHead.style.width = _fnStringToCss( '100%' ); if ( o.nTFoot !== null ) { - nScrollFootInner.parentNode.style.width = _fnStringToCss( '100%' ); + o.nScrollFoot.style.width = _fnStringToCss( '100%' ); } } @@ -453,7 +460,7 @@ function _fnScrollDraw ( o ) nScrollFootInner.style.paddingRight = bScrolling ? o.oScroll.iBarWidth+"px" : "0px"; } - /* Adjust the position of the header incase we loose the y-scrollbar */ + /* Adjust the position of the header in case we loose the y-scrollbar */ $(nScrollBody).scroll(); /* If sorting or filtering has occurred, jump the scrolling back to the top */ @@ -474,22 +481,31 @@ function _fnScrollDraw ( o ) */ function _fnApplyToChildren( fn, an1, an2 ) { - for ( var i=0, iLen=an1.length ; i<iLen ; i++ ) + var index=0, i=0, iLen=an1.length; + var nNode1, nNode2; + + while ( i < iLen ) { - for ( var j=0, jLen=an1[i].childNodes.length ; j<jLen ; j++ ) + nNode1 = an1[i].firstChild; + nNode2 = an2 ? an2[i].firstChild : null; + while ( nNode1 ) { - if ( an1[i].childNodes[j].nodeType == 1 ) + if ( nNode1.nodeType === 1 ) { if ( an2 ) { - fn( an1[i].childNodes[j], an2[i].childNodes[j] ); + fn( nNode1, nNode2, index ); } else { - fn( an1[i].childNodes[j] ); + fn( nNode1, index ); } + index++; } + nNode1 = nNode1.nextSibling; + nNode2 = an2 ? nNode2.nextSibling : null; } + i++; } } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sizing.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sizing.js index 81b217a3..9632ca26 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sizing.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sizing.js @@ -1,5 +1,3 @@ - - /** * Convert a CSS unit width to pixels (e.g. 2em) * @param {string} sWidth width to be converted @@ -16,7 +14,7 @@ function _fnConvertToWidth ( sWidth, nParent ) if ( !nParent ) { - nParent = document.getElementsByTagName('body')[0]; + nParent = document.body; } var iWidth; @@ -46,6 +44,7 @@ function _fnCalculateColumnWidths ( oSettings ) var i, iIndex, iCorrector, iWidth; var oHeaders = $('th', oSettings.nTHead); var widthAttr = oSettings.nTable.getAttribute('width'); + var nWrapper = oSettings.nTable.parentNode; /* Convert any user input sizes into pixel sizes */ for ( i=0 ; i<iColums ; i++ ) @@ -57,7 +56,7 @@ function _fnCalculateColumnWidths ( oSettings ) if ( oSettings.aoColumns[i].sWidth !== null ) { iTmpWidth = _fnConvertToWidth( oSettings.aoColumns[i].sWidthOrig, - oSettings.nTable.parentNode ); + nWrapper ); if ( iTmpWidth !== null ) { oSettings.aoColumns[i].sWidth = _fnStringToCss( iTmpWidth ); @@ -157,7 +156,6 @@ function _fnCalculateColumnWidths ( oSettings ) } /* Build the table and 'display' it */ - var nWrapper = oSettings.nTable.parentNode; nWrapper.appendChild( nCalcTmp ); /* When scrolling (X or Y) we want to set the width of the table as appropriate. However, @@ -284,7 +282,7 @@ function _fnScrollingWidthAdjust ( oSettings, n ) * Get the widest node * @param {object} oSettings dataTables settings object * @param {int} iCol column of interest - * @returns {string} max strlens for each column + * @returns {node} widest table node * @memberof DataTable#oApi */ function _fnGetWidestNode( oSettings, iCol ) @@ -309,7 +307,7 @@ function _fnGetWidestNode( oSettings, iCol ) * Get the maximum strlen for each data column * @param {object} oSettings dataTables settings object * @param {int} iCol column of interest - * @returns {string} max strlens for each column + * @returns {string} max string length for each column * @memberof DataTable#oApi */ function _fnGetMaxLenString( oSettings, iCol ) diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sort.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sort.js index f6cf11ad..c1102a4e 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sort.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.sort.js @@ -1,5 +1,3 @@ - - /** * Change the order of the table * @param {object} oSettings dataTables settings object @@ -26,7 +24,7 @@ function _fnSort ( oSettings, bApplyClasses ) oSettings.aaSortingFixed.concat( oSettings.aaSorting ) : oSettings.aaSorting.slice(); - /* If there is a sorting data type, and a fuction belonging to it, then we need to + /* If there is a sorting data type, and a function belonging to it, then we need to * get the data from the developer's function and apply it for this column */ for ( i=0 ; i<aaSort.length ; i++ ) @@ -208,17 +206,17 @@ function _fnSortAttachListener ( oSettings, nNode, iDataIndex, fnCallback ) * twice - once for when bProcessing is enabled, and another time for when it is * disabled, as we need to perform slightly different actions. * Basically the issue here is that the Javascript engine in modern browsers don't - * appear to allow the rendering engine to update the display while it is still excuting + * appear to allow the rendering engine to update the display while it is still executing * it's thread (well - it does but only after long intervals). This means that the * 'processing' display doesn't appear for a table sort. To break the js thread up a bit * I force an execution break by using setTimeout - but this breaks the expected * thread continuation for the end-developer's point of view (their code would execute - * too early), so we on;y do it when we absolutely have to. + * too early), so we only do it when we absolutely have to. */ var fnInnerSorting = function () { var iColumn, iNextSort; - /* If the shift key is pressed then we are multipe column sorting */ + /* If the shift key is pressed then we are multiple column sorting */ if ( e.shiftKey ) { /* Are we already doing some kind of sort on this column? */ @@ -391,10 +389,10 @@ function _fnSortingClasses( oSettings ) * Apply the required classes to the table body * Note that this is given as a feature switch since it can significantly slow down a sort * on large data sets (adding and removing of classes is always slow at the best of times..) - * Further to this, note that this code is admitadly fairly ugly. It could be made a lot - * simpiler using jQuery selectors and add/removeClass, but that is significantly slower + * Further to this, note that this code is admittedly fairly ugly. It could be made a lot + * simpler using jQuery selectors and add/removeClass, but that is significantly slower * (on the order of 5 times slower) - hence the direct DOM manipulation here. - * Note that for defered drawing we do use jQuery - the reason being that taking the first + * Note that for deferred drawing we do use jQuery - the reason being that taking the first * row found to see if the whole column needs processed can miss classes since the first * column might be new. */ @@ -403,56 +401,49 @@ function _fnSortingClasses( oSettings ) if ( oSettings.oFeatures.bSort && oSettings.oFeatures.bSortClasses ) { var nTds = _fnGetTdNodes( oSettings ); - - /* Remove the old classes */ - if ( oSettings.oFeatures.bDeferRender ) + + /* Determine what the sorting class for each column should be */ + var iClass, iTargetCol; + var asClasses = []; + for (i = 0; i < iColumns; i++) { - $(nTds).removeClass(sClass+'1 '+sClass+'2 '+sClass+'3'); + asClasses.push(""); } - else if ( nTds.length >= iColumns ) + for (i = 0, iClass = 1; i < aaSort.length; i++) { - for ( i=0 ; i<iColumns ; i++ ) + iTargetCol = parseInt( aaSort[i][0], 10 ); + asClasses[iTargetCol] = sClass + iClass; + + if ( iClass < 3 ) { - if ( nTds[i].className.indexOf(sClass+"1") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( sClass+"1", "" ) ); - } - } - else if ( nTds[i].className.indexOf(sClass+"2") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( sClass+"2", "" ) ); - } - } - else if ( nTds[i].className.indexOf(sClass+"3") != -1 ) - { - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) - { - nTds[(iColumns*j)+i].className = - $.trim( nTds[(iColumns*j)+i].className.replace( " "+sClass+"3", "" ) ); - } - } + iClass++; } } - /* Add the new classes to the table */ - var iClass = 1, iTargetCol; - for ( i=0 ; i<aaSort.length ; i++ ) + /* Make changes to the classes for each cell as needed */ + var reClass = new RegExp(sClass + "[123]"); + var sTmpClass, sCurrentClass, sNewClass; + for ( i=0, iLen=nTds.length; i<iLen; i++ ) { - iTargetCol = parseInt( aaSort[i][0], 10 ); - for ( j=0, jLen=(nTds.length/iColumns) ; j<jLen ; j++ ) + /* Determine which column we're looking at */ + iTargetCol = i % iColumns; + + /* What is the full list of classes now */ + sCurrentClass = nTds[i].className; + /* What sorting class should be applied? */ + sNewClass = asClasses[iTargetCol]; + /* What would the new full list be if we did a replacement? */ + sTmpClass = sCurrentClass.replace(reClass, sNewClass); + + if ( sTmpClass != sCurrentClass ) { - nTds[(iColumns*j)+iTargetCol].className += " "+sClass+iClass; + /* We changed something */ + nTds[i].className = $.trim( sTmpClass ); } - - if ( iClass < 3 ) + else if ( sNewClass.length > 0 && sCurrentClass.indexOf(sNewClass) == -1 ) { - iClass++; + /* We need to add a class */ + nTds[i].className = sCurrentClass + " " + sNewClass; } } } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.state.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.state.js index de668f94..300b7d47 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.state.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.state.js @@ -80,7 +80,7 @@ function _fnLoadState ( oSettings, oInit ) $.extend( true, oSettings.aoPreSearchCols, oData.aoSearchCols ); /* Column visibility state - * Pass back visibiliy settings to the init handler, but to do not here override + * Pass back visibility settings to the init handler, but to do not here override * the init object that the user might have passed in */ oInit.saved_aoColumns = []; @@ -132,35 +132,50 @@ function _fnCreateCookie ( sName, sValue, iSecs, sBaseName, fnCallback ) } /* Are we going to go over the cookie limit of 4KiB? If so, try to delete a cookies - * belonging to DataTables. This is FAR from bullet proof + * belonging to DataTables. */ - var sOldName="", iOldTime=9999999999999; - var iLength = _fnReadCookie( sNameFile )!==null ? document.cookie.length : - sFullCookie.length + document.cookie.length; + var + aCookies =document.cookie.split(';'), + iNewCookieLen = sFullCookie.split(';')[0].length, + aOldCookies = []; - if ( iLength+10 > 4096 ) /* Magic 10 for padding */ + if ( iNewCookieLen+document.cookie.length+10 > 4096 ) /* Magic 10 for padding */ { - var aCookies =document.cookie.split(';'); for ( var i=0, iLen=aCookies.length ; i<iLen ; i++ ) { if ( aCookies[i].indexOf( sBaseName ) != -1 ) { /* It's a DataTables cookie, so eval it and check the time stamp */ var aSplitCookie = aCookies[i].split('='); - try { oData = eval( '('+decodeURIComponent(aSplitCookie[1])+')' ); } - catch( e ) { continue; } - - if ( oData.iCreate && oData.iCreate < iOldTime ) - { - sOldName = aSplitCookie[0]; - iOldTime = oData.iCreate; + try { + oData = eval( '('+decodeURIComponent(aSplitCookie[1])+')' ); + + if ( oData && oData.iCreate ) + { + aOldCookies.push( { + "name": aSplitCookie[0], + "time": oData.iCreate + } ); + } } + catch( e ) {} } } - - if ( sOldName !== "" ) - { - document.cookie = sOldName+"=; expires=Thu, 01-Jan-1970 00:00:01 GMT; path="+ + + // Make sure we delete the oldest ones first + aOldCookies.sort( function (a, b) { + return b.time - a.time; + } ); + + // Eliminate as many old DataTables cookies as we need to + while ( iNewCookieLen + document.cookie.length + 10 > 4096 ) { + if ( aOldCookies.length === 0 ) { + // Deleted all DT cookies and still not enough space. Can't state save + return; + } + + var old = aOldCookies.pop(); + document.cookie = old.name+"=; expires=Thu, 01-Jan-1970 00:00:01 GMT; path="+ aParts.join('/') + "/"; } } diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.support.js b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.support.js index e3597c00..dd5ad4c9 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/core/core.support.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/core/core.support.js @@ -1,5 +1,4 @@ - /** * Return the settings object for a particular table * @param {node} nTable table we are using as a dataTable @@ -53,7 +52,7 @@ function _fnGetTdNodes ( oSettings, iIndividualRow ) { var anReturn = []; var iCorrector; - var anTds; + var anTds, nTd; var iRow, iRows=oSettings.aoData.length, iColumn, iColumns, oData, sNodeName, iStart=0, iEnd=iRows; @@ -71,13 +70,15 @@ function _fnGetTdNodes ( oSettings, iIndividualRow ) { /* get the TD child nodes - taking into account text etc nodes */ anTds = []; - for ( iColumn=0, iColumns=oData.nTr.childNodes.length ; iColumn<iColumns ; iColumn++ ) + nTd = oData.nTr.firstChild; + while ( nTd ) { - sNodeName = oData.nTr.childNodes[iColumn].nodeName.toLowerCase(); + sNodeName = nTd.nodeName.toLowerCase(); if ( sNodeName == 'td' || sNodeName == 'th' ) { - anTds.push( oData.nTr.childNodes[iColumn] ); + anTds.push( nTd ); } + nTd = nTd.nextSibling; } iCorrector = 0; @@ -166,17 +167,21 @@ function _fnMap( oRet, oSrc, sName, sMappedName ) */ function _fnExtend( oOut, oExtender ) { + var val; + for ( var prop in oExtender ) { if ( oExtender.hasOwnProperty(prop) ) { - if ( typeof oInit[prop] === 'object' && $.isArray(oExtender[prop]) === false ) + val = oExtender[prop]; + + if ( typeof oInit[prop] === 'object' && val !== null && $.isArray(val) === false ) { - $.extend( true, oOut[prop], oExtender[prop] ); + $.extend( true, oOut[prop], val ); } else { - oOut[prop] = oExtender[prop]; + oOut[prop] = val; } } } @@ -187,7 +192,7 @@ function _fnExtend( oOut, oExtender ) /** * Bind an event handers to allow a click or return key to activate the callback. - * This is good for accessability since a return on the keyboard will have the + * This is good for accessibility since a return on the keyboard will have the * same effect as a click, if the element has focus. * @param {element} n Element to bind the action to * @param {object} oData Data object to pass to the triggered function @@ -216,7 +221,7 @@ function _fnBindAction( n, oData, fn ) * Register a callback function. Easily allows a callback function to be added to * an array store of callback functions that can then all be called together. * @param {object} oSettings dataTables settings object - * @param {string} sStore Name of the array storeage for the callbacks in oSettings + * @param {string} sStore Name of the array storage for the callbacks in oSettings * @param {function} fn Function to be called back * @param {string} sName Identifying name for the callback (i.e. a label) * @memberof DataTable#oApi @@ -238,7 +243,7 @@ function _fnCallbackReg( oSettings, sStore, fn, sName ) * array store is done backwards! Further note that you do not want to fire off triggers * in time sensitive applications (for example cell creation) as its slow. * @param {object} oSettings dataTables settings object - * @param {string} sStore Name of the array storeage for the callbacks in oSettings + * @param {string} sStore Name of the array storage for the callbacks in oSettings * @param {string} sTrigger Name of the jQuery custom event to trigger. If null no trigger * is fired * @param {array} aArgs Array of arguments to pass to the callback function / trigger @@ -266,7 +271,7 @@ function _fnCallbackFire( oSettings, sStore, sTrigger, aArgs ) /** * JSON stringify. If JSON.stringify it provided by the browser, json2.js or any other * library, then we use that as it is fast, safe and accurate. If the function isn't - * available then we need to built it ourselves - the insperation for this function comes + * available then we need to built it ourselves - the inspiration for this function comes * from Craig Buckler ( http://www.sitepoint.com/javascript-json-serialization/ ). It is * not perfect and absolutely should not be used as a replacement to json2.js - but it does * do what we need, without requiring a dependency for DataTables. @@ -314,3 +319,28 @@ var _fnJsonString = (window.JSON) ? JSON.stringify : function( o ) return (bArr ? "[" : "{") + json + (bArr ? "]" : "}"); }; + +/** + * From some browsers (specifically IE6/7) we need special handling to work around browser + * bugs - this function is used to detect when these workarounds are needed. + * @param {object} oSettings dataTables settings object + * @memberof DataTable#oApi + */ +function _fnBrowserDetect( oSettings ) +{ + /* IE6/7 will oversize a width 100% element inside a scrolling element, to include the + * width of the scrollbar, while other browsers ensure the inner element is contained + * without forcing scrolling + */ + var n = $( + '<div style="position:absolute; top:0; left:0; height:1px; width:1px; overflow:hidden">'+ + '<div style="position:absolute; top:1px; left:1px; width:100px; overflow:scroll;">'+ + '<div id="DT_BrowserTest" style="width:100%; height:10px;"></div>'+ + '</div>'+ + '</div>')[0]; + + document.body.appendChild( n ); + oSettings.oBrowser.bScrollOversize = $('#DT_BrowserTest', n)[0].offsetWidth === 100 ? true : false; + document.body.removeChild( n ); +} + diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/ext/ext.paging.js b/wqflask/wqflask/static/new/packages/DataTables/src/ext/ext.paging.js index 195a5797..4183646a 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/ext/ext.paging.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/ext/ext.paging.js @@ -1,4 +1,3 @@ - /* * Variable: oPagination * Purpose: @@ -73,17 +72,22 @@ $.extend( DataTable.ext.oPagination, { var oClasses = oSettings.oClasses; var an = oSettings.aanFeatures.p; + var nNode; /* Loop over each instance of the pager */ for ( var i=0, iLen=an.length ; i<iLen ; i++ ) { - if ( an[i].childNodes.length !== 0 ) + nNode = an[i].firstChild; + if ( nNode ) { - an[i].childNodes[0].className = ( oSettings._iDisplayStart === 0 ) ? - oClasses.sPagePrevDisabled : oClasses.sPagePrevEnabled; - - an[i].childNodes[1].className = ( oSettings.fnDisplayEnd() == oSettings.fnRecordsDisplay() ) ? - oClasses.sPageNextDisabled : oClasses.sPageNextEnabled; + /* Previous page */ + nNode.className = ( oSettings._iDisplayStart === 0 ) ? + oClasses.sPagePrevDisabled : oClasses.sPagePrevEnabled; + + /* Next page */ + nNode = nNode.nextSibling; + nNode.className = ( oSettings.fnDisplayEnd() == oSettings.fnRecordsDisplay() ) ? + oClasses.sPageNextDisabled : oClasses.sPageNextEnabled; } } } @@ -172,7 +176,7 @@ $.extend( DataTable.ext.oPagination, { var sList = ""; var iStartButton, iEndButton, i, iLen; var oClasses = oSettings.oClasses; - var anButtons, anStatic, nPaginateList; + var anButtons, anStatic, nPaginateList, nNode; var an = oSettings.aanFeatures.p; var fnBind = function (j) { oSettings.oApi._fnBindAction( this, {"page": j+iStartButton-1}, function(e) { @@ -223,18 +227,19 @@ $.extend( DataTable.ext.oPagination, { /* Loop over each instance of the pager */ for ( i=0, iLen=an.length ; i<iLen ; i++ ) { - if ( an[i].childNodes.length === 0 ) + nNode = an[i]; + if ( !nNode.hasChildNodes() ) { continue; } - /* Build up the dynamic list forst - html and listeners */ - $('span:eq(0)', an[i]) + /* Build up the dynamic list first - html and listeners */ + $('span:eq(0)', nNode) .html( sList ) .children('a').each( fnBind ); - /* Update the premanent botton's classes */ - anButtons = an[i].getElementsByTagName('a'); + /* Update the permanent button's classes */ + anButtons = nNode.getElementsByTagName('a'); anStatic = [ anButtons[0], anButtons[1], anButtons[anButtons.length-2], anButtons[anButtons.length-1] diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.column.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.column.js index 0f440cf8..db54cc0c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.column.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.column.js @@ -48,14 +48,14 @@ DataTable.models.oColumn = { "bSortable": null, /** - * When using fnRender, you have two options for what to do with the data, - * and this property serves as the switch. Firstly, you can have the sorting - * and filtering use the rendered value (true - default), or you can have - * the sorting and filtering us the original value (false). - * - * *NOTE* It is it is advisable now to use mDataProp as a function and make - * use of the 'type' that it gives, allowing (potentially) different data to - * be used for sorting, filtering, display and type detection. + * <code>Deprecated</code> When using fnRender, you have two options for what + * to do with the data, and this property serves as the switch. Firstly, you + * can have the sorting and filtering use the rendered value (true - default), + * or you can have the sorting and filtering us the original value (false). + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type boolean * @deprecated */ @@ -78,9 +78,9 @@ DataTable.models.oColumn = { /** * Developer definable function that is called whenever a cell is created (Ajax source, - * etc) or processed for input (DOM source). This can be used as a compliment to fnRender + * etc) or processed for input (DOM source). This can be used as a compliment to mRender * allowing you to modify the DOM element (add background colour for example) when the - * element is available (since it is not when fnRender is called). + * element is available. * @type function * @param {element} nTd The TD node that has been created * @param {*} sData The Data for the cell @@ -93,7 +93,7 @@ DataTable.models.oColumn = { /** * Function to get data from a cell in a column. You should <b>never</b> * access data directly through _aData internally in DataTables - always use - * the method attached to this property. It allows mDataProp to function as + * the method attached to this property. It allows mData to function as * required. This function is automatically assigned by the column * initialisation method * @type function @@ -107,8 +107,12 @@ DataTable.models.oColumn = { "fnGetData": null, /** - * Custom display function that will be called for the display of each cell - * in this column. + * <code>Deprecated</code> Custom display function that will be called for the + * display of each cell in this column. + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type function * @param {object} o Object with the following parameters: * @param {int} o.iDataRow The row in aoData @@ -117,13 +121,14 @@ DataTable.models.oColumn = { * @param {object} o.oSettings The settings object for this DataTables instance * @returns {string} The string you which to use in the display * @default null + * @deprecated */ "fnRender": null, /** * Function to set data for a cell in the column. You should <b>never</b> * set the data directly to _aData internally in DataTables - always use - * this method. It allows mDataProp to function as required. This function + * this method. It allows mData to function as required. This function * is automatically assigned by the column initialisation method * @type function * @param {array|object} oData The data array/object for the array @@ -140,7 +145,17 @@ DataTable.models.oColumn = { * @type function|int|string|null * @default null */ - "mDataProp": null, + "mData": null, + + /** + * Partner property to mData which is used (only when defined) to get + * the data - i.e. it is basically the same as mData, but without the + * 'set' option, and also the data fed to it is the result from mData. + * This is the rendering method to match the data method of mData. + * @type function|int|string|null + * @default null + */ + "mRender": null, /** * Unique header TH/TD element for this column - this is what the sorting @@ -181,7 +196,7 @@ DataTable.models.oColumn = { /** * Allows a default value to be given for a column's data, and will be used - * whenever a null data source is encountered (this can be because mDataProp + * whenever a null data source is encountered (this can be because mData * is set to null, or because the data source itself is null). * @type string * @default null diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.columns.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.columns.js index 4828e02a..9387fe2c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.columns.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.columns.js @@ -15,7 +15,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "aDataSort": [ 0, 1 ], "aTargets": [ 0 ] }, @@ -27,7 +27,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "aDataSort": [ 0, 1 ] }, @@ -52,7 +52,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "asSorting": [ "asc" ], "aTargets": [ 1 ] }, @@ -64,7 +64,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -87,7 +87,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bSearchable": false, "aTargets": [ 0 ] } @@ -96,7 +96,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bSearchable": false }, @@ -118,7 +118,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bSortable": false, "aTargets": [ 0 ] } @@ -127,7 +127,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bSortable": false }, @@ -142,51 +142,18 @@ DataTable.defaults.columns = { /** - * When using fnRender() for a column, you may wish to use the original data - * (before rendering) for sorting and filtering (the default is to used the - * rendered data that the user can see). This may be useful for dates etc. + * <code>Deprecated</code> When using fnRender() for a column, you may wish + * to use the original data (before rendering) for sorting and filtering + * (the default is to used the rendered data that the user can see). This + * may be useful for dates etc. * - * *NOTE* It is it is advisable now to use mDataProp as a function and make - * use of the 'type' that it gives, allowing (potentially) different data to - * be used for sorting, filtering, display and type detection. + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type boolean * @default true * @dtopt Columns - * - * @example - * // Using aoColumnDefs - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumnDefs": [ - * { - * "fnRender": function ( oObj ) { - * return oObj.aData[0] +' '+ oObj.aData[3]; - * }, - * "bUseRendered": false, - * "aTargets": [ 0 ] - * } - * ] - * } ); - * } ); - * - * @example - * // Using aoColumns - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumns": [ - * { - * "fnRender": function ( oObj ) { - * return oObj.aData[0] +' '+ oObj.aData[3]; - * }, - * "bUseRendered": false - * }, - * null, - * null, - * null, - * null - * ] - * } ); - * } ); + * @deprecated */ "bUseRendered": true, @@ -199,7 +166,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "bVisible": false, "aTargets": [ 0 ] } @@ -208,7 +175,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "bVisible": false }, @@ -224,9 +191,9 @@ DataTable.defaults.columns = { /** * Developer definable function that is called whenever a cell is created (Ajax source, - * etc) or processed for input (DOM source). This can be used as a compliment to fnRender + * etc) or processed for input (DOM source). This can be used as a compliment to mRender * allowing you to modify the DOM element (add background colour for example) when the - * element is available (since it is not when fnRender is called). + * element is available. * @type function * @param {element} nTd The TD node that has been created * @param {*} sData The Data for the cell @@ -236,7 +203,7 @@ DataTable.defaults.columns = { * @dtopt Columns * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ { * "aTargets": [3], @@ -253,8 +220,12 @@ DataTable.defaults.columns = { /** - * Custom display function that will be called for the display of each cell in - * this column. + * <code>Deprecated</code> Custom display function that will be called for the + * display of each cell in this column. + * + * Please note that this option has now been deprecated and will be removed + * in the next version of DataTables. Please use mRender / mData rather than + * fnRender. * @type function * @param {object} o Object with the following parameters: * @param {int} o.iDataRow The row in aoData @@ -265,37 +236,7 @@ DataTable.defaults.columns = { * @param {*} val The current cell value * @returns {string} The string you which to use in the display * @dtopt Columns - * - * @example - * // Using aoColumnDefs - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumnDefs": [ - * { - * "fnRender": function ( o, val ) { - * return o.aData[0] +' '+ o.aData[3]; - * }, - * "aTargets": [ 0 ] - * } - * ] - * } ); - * } ); - * - * @example - * // Using aoColumns - * $(document).ready(function() { - * $('#example').dataTable( { - * "aoColumns": [ - * { "fnRender": function ( o, val ) { - * return o.aData[0] +' '+ o.aData[3]; - * } }, - * null, - * null, - * null, - * null - * ] - * } ); - * } ); + * @deprecated */ "fnRender": null, @@ -310,7 +251,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "iDataSort": 1, "aTargets": [ 0 ] } @@ -320,7 +261,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "iDataSort": 1 }, @@ -336,14 +277,23 @@ DataTable.defaults.columns = { /** + * This parameter has been replaced by mData in DataTables to ensure naming + * consistency. mDataProp can still be used, as there is backwards compatibility + * in DataTables for this option, but it is strongly recommended that you use + * mData in preference to mDataProp. + * @name DataTable.defaults.columns.mDataProp + */ + + + /** * This property can be used to read data from any JSON data source property, - * including deeply nested objects / properties. mDataProp can be given in a + * including deeply nested objects / properties. mData can be given in a * number of different ways which effect its behaviour: * <ul> * <li>integer - treated as an array index for the data source. This is the * default that DataTables uses (incrementally increased for each column).</li> * <li>string - read an object property from the data source. Note that you can - * use Javascript dotted notation to read deep properties/arrays from the + * use Javascript dotted notation to read deep properties / arrays from the * data source.</li> * <li>null - the sDefaultContent option will be used for the cell (null * by default, so you will need to specify the default content you want - @@ -364,34 +314,38 @@ DataTable.defaults.columns = { * of call, but otherwise the return is what will be used for the data * requested.</li> * </ul> + * + * Note that prior to DataTables 1.9.2 mData was called mDataProp. The name change + * reflects the flexibility of this property and is consistent with the naming of + * mRender. If 'mDataProp' is given, then it will still be used by DataTables, as + * it automatically maps the old name to the new if required. * @type string|int|function|null * @default null <i>Use automatically calculated column index</i> * @dtopt Columns * * @example * // Read table data from objects - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/deep.txt", * "aoColumns": [ - * { "mDataProp": "engine" }, - * { "mDataProp": "browser" }, - * { "mDataProp": "platform.inner" }, - * { "mDataProp": "platform.details.0" }, - * { "mDataProp": "platform.details.1" } + * { "mData": "engine" }, + * { "mData": "browser" }, + * { "mData": "platform.inner" }, + * { "mData": "platform.details.0" }, + * { "mData": "platform.details.1" } * ] * } ); * } ); * * @example - * // Using mDataProp as a function to provide different information for + * // Using mData as a function to provide different information for * // sorting, filtering and display. In this case, currency (price) - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { - * "aoColumnDefs": [ - * { + * "aoColumnDefs": [ { * "aTargets": [ 0 ], - * "mDataProp": function ( source, type, val ) { + * "mData": function ( source, type, val ) { * if (type === 'set') { * source.price = val; * // Store the computed dislay and filter values for efficiency @@ -408,11 +362,80 @@ DataTable.defaults.columns = { * // 'sort', 'type' and undefined all just use the integer * return source.price; * } + * } ] + * } ); + * } ); + */ + "mData": null, + + + /** + * This property is the rendering partner to mData and it is suggested that + * when you want to manipulate data for display (including filtering, sorting etc) + * but not altering the underlying data for the table, use this property. mData + * can actually do everything this property can and more, but this parameter is + * easier to use since there is no 'set' option. Like mData is can be given + * in a number of different ways to effect its behaviour, with the addition of + * supporting array syntax for easy outputting of arrays (including arrays of + * objects): + * <ul> + * <li>integer - treated as an array index for the data source. This is the + * default that DataTables uses (incrementally increased for each column).</li> + * <li>string - read an object property from the data source. Note that you can + * use Javascript dotted notation to read deep properties / arrays from the + * data source and also array brackets to indicate that the data reader should + * loop over the data source array. When characters are given between the array + * brackets, these characters are used to join the data source array together. + * For example: "accounts[, ].name" would result in a comma separated list with + * the 'name' value from the 'accounts' array of objects.</li> + * <li>function - the function given will be executed whenever DataTables + * needs to set or get the data for a cell in the column. The function + * takes three parameters: + * <ul> + * <li>{array|object} The data source for the row (based on mData)</li> + * <li>{string} The type call data requested - this will be 'filter', 'display', + * 'type' or 'sort'.</li> + * <li>{array|object} The full data source for the row (not based on mData)</li> + * </ul> + * The return value from the function is what will be used for the data + * requested.</li> + * </ul> + * @type string|int|function|null + * @default null <i>Use mData</i> + * @dtopt Columns + * + * @example + * // Create a comma separated list from an array of objects + * $(document).ready( function() { + * var oTable = $('#example').dataTable( { + * "sAjaxSource": "sources/deep.txt", + * "aoColumns": [ + * { "mData": "engine" }, + * { "mData": "browser" }, + * { + * "mData": "platform", + * "mRender": "[, ].name" + * } + * ] + * } ); + * } ); + * + * @example + * // Use as a function to create a link from the data source + * $(document).ready( function() { + * var oTable = $('#example').dataTable( { + * "aoColumnDefs": [ + * { + * "aTargets": [ 0 ], + * "mData": "download_link", + * "mRender": function ( data, type, full ) { + * return '<a href="'+data+'">Download</a>'; + * } * ] * } ); * } ); */ - "mDataProp": null, + "mRender": null, /** @@ -425,13 +448,12 @@ DataTable.defaults.columns = { * * @example * // Make the first column use TH cells - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { - * "aoColumnDefs": [ - * { + * "aoColumnDefs": [ { * "aTargets": [ 0 ], * "sCellType": "th" - * ] + * } ] * } ); * } ); */ @@ -446,7 +468,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sClass": "my_class", "aTargets": [ 0 ] } @@ -456,7 +478,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sClass": "my_class" }, @@ -487,7 +509,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -505,7 +527,7 @@ DataTable.defaults.columns = { /** * Allows a default value to be given for a column's data, and will be used - * whenever a null data source is encountered (this can be because mDataProp + * whenever a null data source is encountered (this can be because mData * is set to null, or because the data source itself is null). * @type string * @default null @@ -513,11 +535,11 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { - * "mDataProp": null, + * "mData": null, * "sDefaultContent": "Edit", * "aTargets": [ -1 ] * } @@ -527,14 +549,14 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, * null, * null, * { - * "mDataProp": null, + * "mData": null, * "sDefaultContent": "Edit" * } * ] @@ -557,7 +579,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sName": "engine", "aTargets": [ 0 ] }, @@ -571,7 +593,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sName": "engine" }, @@ -588,7 +610,7 @@ DataTable.defaults.columns = { /** * Defines a data source type for the sorting which can be used to read - * realtime information from the table (updating the internally cached + * real-time information from the table (updating the internally cached * version) prior to sorting. This allows sorting to occur on user editable * elements such as form inputs. * @type string @@ -597,7 +619,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sSortDataType": "dom-text", "aTargets": [ 2, 3 ] }, @@ -610,7 +632,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * null, @@ -635,7 +657,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sTitle": "My column title", "aTargets": [ 0 ] } @@ -645,7 +667,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sTitle": "My column title" }, @@ -674,7 +696,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sType": "html", "aTargets": [ 0 ] } @@ -684,7 +706,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sType": "html" }, @@ -701,7 +723,7 @@ DataTable.defaults.columns = { /** * Defining the width of the column, this parameter may take any CSS value - * (3em, 20px etc). DataTables applys 'smart' widths to columns which have not + * (3em, 20px etc). DataTables apples 'smart' widths to columns which have not * been given a specific width through this interface ensuring that the table * remains readable. * @type string @@ -710,7 +732,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumnDefs - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumnDefs": [ * { "sWidth": "20%", "aTargets": [ 0 ] } @@ -720,7 +742,7 @@ DataTable.defaults.columns = { * * @example * // Using aoColumns - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aoColumns": [ * { "sWidth": "20%" }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.js index a2039401..779f19d8 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.defaults.js @@ -34,7 +34,7 @@ DataTable.defaults = { * } ); * * @example - * // Using an array of objects as a data source (mDataProp) + * // Using an array of objects as a data source (mData) * $(document).ready( function () { * $('#example').dataTable( { * "aaData": [ @@ -54,11 +54,11 @@ DataTable.defaults = { * } * ], * "aoColumns": [ - * { "sTitle": "Engine", "mDataProp": "engine" }, - * { "sTitle": "Browser", "mDataProp": "browser" }, - * { "sTitle": "Platform", "mDataProp": "platform" }, - * { "sTitle": "Version", "mDataProp": "version" }, - * { "sTitle": "Grade", "mDataProp": "grade" } + * { "sTitle": "Engine", "mData": "engine" }, + * { "sTitle": "Browser", "mData": "browser" }, + * { "sTitle": "Platform", "mData": "platform" }, + * { "sTitle": "Version", "mData": "version" }, + * { "sTitle": "Grade", "mData": "grade" } * ] * } ); * } ); @@ -127,7 +127,7 @@ DataTable.defaults = { * @dtopt Option * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "aLengthMenu": [[10, 25, 50, -1], [10, 25, 50, "All"]] * } ); @@ -137,7 +137,7 @@ DataTable.defaults = { * // Setting the default display length as well as length menu * // This is likely to be wanted if you remove the '10' option which * // is the iDisplayLength default. - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "iDisplayLength": 25, * "aLengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]] @@ -209,7 +209,7 @@ DataTable.defaults = { * array may be of any length, and DataTables will apply each class * sequentially, looping when required. * @type array - * @default null <i>Will take the values determinted by the oClasses.sStripe* + * @default null <i>Will take the values determined by the oClasses.sStripe* * options</i> * @dtopt Option * @@ -252,7 +252,7 @@ DataTable.defaults = { * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/arrays.txt", * "bDeferRender": true @@ -272,7 +272,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200px", * "bPaginate": false @@ -411,7 +411,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * initTable(); * tableActions(); * } ); @@ -443,7 +443,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollAutoCss": false, * "sScrollY": "200px" @@ -465,7 +465,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200", * "bScrollCollapse": true @@ -487,7 +487,7 @@ DataTable.defaults = { * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollInfinite": true, * "bScrollCollapse": true, @@ -544,7 +544,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bSortCellsTop": true * } ); @@ -631,7 +631,7 @@ DataTable.defaults = { * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnCreatedRow": function( nRow, aData, iDataIndex ) { * // Bold the grade for all 'A' grade browsers @@ -704,7 +704,7 @@ DataTable.defaults = { * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnFormatNumber": function ( iIn ) { * if ( iIn < 1000 ) { @@ -863,7 +863,7 @@ DataTable.defaults = { * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "fnRowCallback": function( nRow, aData, iDisplayIndex, iDisplayIndexFull ) { * // Bold the grade for all 'A' grade browsers @@ -896,7 +896,7 @@ DataTable.defaults = { * * @example * // POST data to server - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bProcessing": true, * "bServerSide": true, @@ -918,7 +918,11 @@ DataTable.defaults = { "url": sUrl, "data": aoData, "success": function (json) { - $(oSettings.oInstance).trigger('xhr', oSettings); + if ( json.sError ) { + oSettings.oApi._fnLog( oSettings, 0, json.sError ); + } + + $(oSettings.oInstance).trigger('xhr', [oSettings, json]); fnCallback( json ); }, "dataType": "json", @@ -952,7 +956,7 @@ DataTable.defaults = { * @dtopt Server-side * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bProcessing": true, * "bServerSide": true, @@ -977,7 +981,7 @@ DataTable.defaults = { * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoad": function (oSettings) { @@ -1027,21 +1031,23 @@ DataTable.defaults = { * * @example * // Remove a saved filter, so filtering is never loaded - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoadParams": function (oSettings, oData) { * oData.oSearch.sSearch = ""; + * } * } ); * } ); * * @example * // Disallow state loading by returning false - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoadParams": function (oSettings, oData) { * return false; + * } * } ); * } ); */ @@ -1058,11 +1064,12 @@ DataTable.defaults = { * * @example * // Show an alert with the filtering value that was saved - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateLoaded": function (oSettings, oData) { * alert( 'Saved filter was: '+oData.oSearch.sSearch ); + * } * } ); * } ); */ @@ -1080,7 +1087,7 @@ DataTable.defaults = { * @dtopt Callbacks * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateSave": function (oSettings, oData) { @@ -1120,11 +1127,12 @@ DataTable.defaults = { * * @example * // Remove a saved filter, so filtering is never saved - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bStateSave": true, * "fnStateSaveParams": function (oSettings, oData) { * oData.oSearch.sSearch = ""; + * } * } ); * } ); */ @@ -1141,7 +1149,7 @@ DataTable.defaults = { * @example * $(document).ready( function() { * $('#example').dataTable( { - * "iCookieDuration": 60*60*24 // 1 day + * "iCookieDuration": 60*60*24; // 1 day * } ); * } ) */ @@ -1166,7 +1174,7 @@ DataTable.defaults = { * * @example * // 57 records available in the table, no filtering applied - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/server_processing.php", @@ -1176,7 +1184,7 @@ DataTable.defaults = { * * @example * // 57 records after filtering, 100 without filtering (an initial filter applied) - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/server_processing.php", @@ -1237,7 +1245,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bScrollInfinite": true, * "bScrollCollapse": true, @@ -1261,7 +1269,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "iTabIndex": 1 * } ); @@ -1293,7 +1301,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oAria": { @@ -1314,7 +1322,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oAria": { @@ -1341,7 +1349,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -1362,7 +1370,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -1376,14 +1384,14 @@ DataTable.defaults = { /** - * Text to use when using the 'full_numbers' type of pagination for the - * button to take the user to the next page. + * Text to use for the 'next' pagination button (to take the user to the + * next page). * @type string * @default Next * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -1397,14 +1405,14 @@ DataTable.defaults = { /** - * Text to use when using the 'full_numbers' type of pagination for the - * button to take the user to the previous page. + * Text to use for the 'previous' pagination button (to take the user to + * the previous page). * @type string * @default Previous * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "oPaginate": { @@ -1427,7 +1435,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sEmptyTable": "No data available in table" @@ -1448,7 +1456,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfo": "Got a total of _TOTAL_ entries to show (_START_ to _END_)" @@ -1467,7 +1475,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoEmpty": "No entries to show" @@ -1487,7 +1495,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoFiltered": " - filtering from _MAX_ records" @@ -1508,7 +1516,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoPostFix": "All records shown are derived from real information." @@ -1529,7 +1537,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sInfoThousands": "'" @@ -1551,7 +1559,7 @@ DataTable.defaults = { * * @example * // Language change only - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sLengthMenu": "Display _MENU_ records" @@ -1561,7 +1569,7 @@ DataTable.defaults = { * * @example * // Language and options change - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sLengthMenu": 'Display <select>'+ @@ -1609,7 +1617,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sProcessing": "DataTables is currently busy" @@ -1632,7 +1640,7 @@ DataTable.defaults = { * * @example * // Input text box will be appended at the end automatically - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sSearch": "Filter records:" @@ -1642,7 +1650,7 @@ DataTable.defaults = { * * @example * // Specify where the filter should appear - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sSearch": "Apply filter _INPUT_ to table" @@ -1665,7 +1673,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sUrl": "http://www.sprymedia.co.uk/dataTables/lang.txt" @@ -1685,7 +1693,7 @@ DataTable.defaults = { * @dtopt Language * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "oLanguage": { * "sZeroRecords": "No records to display" @@ -1731,7 +1739,7 @@ DataTable.defaults = { * * @example * // Get data from { "data": [...] } - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/data.txt", * "sAjaxDataProp": "data" @@ -1740,7 +1748,7 @@ DataTable.defaults = { * * @example * // Get data from { "data": { "inner": [...] } } - * $(document).ready(function() { + * $(document).ready( function() { * var oTable = $('#example').dataTable( { * "sAjaxSource": "sources/data.txt", * "sAjaxDataProp": "data.inner" @@ -1778,7 +1786,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sCookiePrefix": "my_datatable_", * } ); @@ -1830,7 +1838,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sDom": '<"top"i>rt<"bottom"flp><"clear">' * } ); @@ -1868,7 +1876,7 @@ DataTable.defaults = { * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollX": "100%", * "bScrollCollapse": true @@ -1890,7 +1898,7 @@ DataTable.defaults = { * @dtopt Options * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollX": "100%", * "sScrollXInner": "110%" @@ -1912,7 +1920,7 @@ DataTable.defaults = { * @dtopt Features * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "sScrollY": "200px", * "bPaginate": false @@ -1931,7 +1939,7 @@ DataTable.defaults = { * @dtopt Server-side * * @example - * $(document).ready(function() { + * $(document).ready( function() { * $('#example').dataTable( { * "bServerSide": true, * "sAjaxSource": "scripts/post.php", diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.ext.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.ext.js index 7483984d..45566a62 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.ext.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.ext.js @@ -92,8 +92,8 @@ DataTable.models.ext = { * </il> * </ul> * - * Note that as of v1.9, it is typically preferable to use <i>mDataProp</i> to prepare data for - * the different uses that DataTables can put the data to. Specifically <i>mDataProp</i> when + * Note that as of v1.9, it is typically preferable to use <i>mData</i> to prepare data for + * the different uses that DataTables can put the data to. Specifically <i>mData</i> when * used as a function will give you a 'type' (sorting, filtering etc) that you can use to * prepare the data as required for the different types. As such, this method is deprecated. * @type array @@ -258,8 +258,8 @@ DataTable.models.ext = { * </il> * </ul> * - * Note that as of v1.9, it is typically preferable to use <i>mDataProp</i> to prepare data for - * the different uses that DataTables can put the data to. Specifically <i>mDataProp</i> when + * Note that as of v1.9, it is typically preferable to use <i>mData</i> to prepare data for + * the different uses that DataTables can put the data to. Specifically <i>mData</i> when * used as a function will give you a 'type' (sorting, filtering etc) that you can use to * prepare the data as required for the different types. As such, this method is deprecated. * @type object diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.row.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.row.js index f88ec698..4d5d6402 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.row.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.row.js @@ -18,7 +18,7 @@ DataTable.models.oRow = { /** * Data object from the original data source for the row. This is either * an array if using the traditional form of DataTables, or an object if - * using mDataProp options. The exact type will depend on the passed in + * using mData options. The exact type will depend on the passed in * data from the data source, or will be an array if using DOM a data * source. * @type array|object diff --git a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.settings.js b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.settings.js index 6d66e9e6..27254799 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/src/model/model.settings.js +++ b/wqflask/wqflask/static/new/packages/DataTables/src/model/model.settings.js @@ -223,12 +223,26 @@ DataTable.models.oSettings = { * Information callback function. See * {@link DataTable.defaults.fnInfoCallback} * @type function - * @default + * @default null */ "fnInfoCallback": null }, /** + * Browser support parameters + * @namespace + */ + "oBrowser": { + /** + * Indicate if the browser incorrectly calculates width:100% inside a + * scrolling element (IE6/7) + * @type boolean + * @default false + */ + "bScrollOversize": false + }, + + /** * Array referencing the nodes which are used for the features. The * parameters of this object match what is allowed by sDom - i.e. * <ul> diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config.js index af7fcae8..2aff4602 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config.js @@ -22,11 +22,11 @@ oTest.fnTest( $(document).ready( function () { var oInit = { "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaData": [ { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_arrays_subobjects.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_arrays_subobjects.js index 22c127ed..c37b8ed5 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_arrays_subobjects.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_arrays_subobjects.js @@ -24,9 +24,9 @@ $(document).ready( function () { "aoColumns": [ null, null, - { "mDataProp": 2 }, - { "mDataProp": "3.version" }, - { "mDataProp": "3.grade" } + { "mData": 2 }, + { "mData": "3.version" }, + { "mData": "3.grade" } ], "aaData": [ [ diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_deep.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_deep.js index 206f8b1a..69f17648 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_deep.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_deep.js @@ -22,11 +22,11 @@ oTest.fnTest( $(document).ready( function () { var oInit = { "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform.inner" }, - { "mDataProp": "platform.details.0" }, - { "mDataProp": "platform.details.1" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform.inner" }, + { "mData": "platform.details.0" }, + { "mData": "platform.details.1" } ], "aaData": [ { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_null_source.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_null_source.js index 586ff108..2667e017 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_null_source.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_null_source.js @@ -26,7 +26,7 @@ $(document).ready( function () { null, null, null, - { "mDataProp": null } + { "mData": null } ], "aaData": gaaData }; diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects.js index af7fcae8..2aff4602 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects.js @@ -22,11 +22,11 @@ oTest.fnTest( $(document).ready( function () { var oInit = { "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaData": [ { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects_subarrays.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects_subarrays.js index 06c40bc3..05fdb990 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects_subarrays.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/_zero_config_objects_subarrays.js @@ -22,11 +22,11 @@ oTest.fnTest( $(document).ready( function () { var oInit = { "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "details.0" }, - { "mDataProp": "details.1" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "details.0" }, + { "mData": "details.1" } ], "aaData": [ { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSorting.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSorting.js index e4600f99..f6b7e3ae 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSorting.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSorting.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -46,11 +46,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['1','asc']] } ); @@ -66,11 +66,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['1','desc']] } ); @@ -86,11 +86,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['1','asc']] } ); @@ -106,11 +106,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['1','desc']] } ); @@ -126,11 +126,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','asc'], ['1','asc']] } ); @@ -145,11 +145,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','asc'], ['1','desc']] } ); @@ -164,11 +164,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','desc'], ['1','asc']] } ); @@ -183,11 +183,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','desc'], ['1','desc']] } ); @@ -203,11 +203,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','asc'], ['3','asc']] } ); @@ -222,11 +222,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','asc'], ['3','desc']] } ); @@ -241,11 +241,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','desc'], ['3','asc']] } ); @@ -260,11 +260,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','desc'], ['3','desc']] } ); @@ -279,11 +279,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSorting": [['0','asc'], ['3','asc'], ['1','asc']] } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSortingFixed.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSortingFixed.js index a020d731..5794cc0f 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSortingFixed.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aaSortingFixed.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -31,11 +31,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSortingFixed": [['0','asc']], "fnInitComplete": function () { @@ -62,11 +62,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "aaSortingFixed": [['3','asc']] } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSearchable.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSearchable.js index 6979926c..9f963f99 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSearchable.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSearchable.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -33,11 +33,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "bSearchable": false }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "bSearchable": false }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); oSettings = oTable.fnSettings(); @@ -59,11 +59,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine", "bSearchable": false }, - { "mDataProp": "browser", "bSearchable": false }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine", "bSearchable": false }, + { "mData": "browser", "bSearchable": false }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); oSettings = oTable.fnSettings(); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSortable.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSortable.js index 8b161456..60ec2406 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSortable.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bSortable.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -28,11 +28,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "bSortable": false }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "bSortable": false }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); $('#example thead th:eq(1)').click(); @@ -62,11 +62,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "bSortable": false }, - { "mDataProp": "platform" }, - { "mDataProp": "version", "bSortable": false }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "bSortable": false }, + { "mData": "platform" }, + { "mData": "version", "bSortable": false }, + { "mData": "grade" } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bUseRendered.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bUseRendered.js index 421acd26..9032e3ac 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bUseRendered.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bUseRendered.js @@ -12,9 +12,9 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "fnRender": function (a) { if ( mTmp == 0 ) { mTmp++; @@ -23,9 +23,9 @@ $(document).ready( function () { return a.aData['browser']; } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -44,9 +44,9 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "bUseRendered": false, "fnRender": function (a) { if ( mTmp == 0 ) { @@ -57,9 +57,9 @@ $(document).ready( function () { } } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); $('#example thead th:eq(1)').click(); @@ -80,7 +80,7 @@ $(document).ready( function () { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ { - "mDataProp": "engine", + "mData": "engine", "fnRender": function (a) { if ( mTmp == 0 ) { mTmp++; @@ -91,7 +91,7 @@ $(document).ready( function () { } }, { - "mDataProp": "browser", + "mData": "browser", "bUseRendered": false, "fnRender": function (a) { if ( mTmp2 == 0 ) { @@ -103,7 +103,7 @@ $(document).ready( function () { } }, { - "mDataProp": "platform", + "mData": "platform", "fnRender": function (a) { if ( mTmp3 == 0 ) { mTmp3++; @@ -113,8 +113,8 @@ $(document).ready( function () { } } }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "version" }, + { "mData": "grade" } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bVisible.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bVisible.js index 3ad7c0ab..638fc45a 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bVisible.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.bVisible.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -28,11 +28,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "bVisible": false }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "bVisible": false }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -83,11 +83,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "bVisible": false }, - { "mDataProp": "platform", "bVisible": false }, - { "mDataProp": "version" }, - { "mDataProp": "grade", "bVisible": false } + { "mData": "engine" }, + { "mData": "browser", "bVisible": false }, + { "mData": "platform", "bVisible": false }, + { "mData": "version" }, + { "mData": "grade", "bVisible": false } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.fnRender.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.fnRender.js index 9d06e8e3..0c1752d3 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.fnRender.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.fnRender.js @@ -7,17 +7,17 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "fnRender": function (a) { mTmp++; return a.aData['browser']; } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -36,22 +36,22 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { "fnRender": function (a) { if ( arguments.length != 2 || typeof a.iDataRow=='undefined' || typeof a.iDataColumn=='undefined' || typeof a.aData=='undefined' || - typeof a.mDataProp=='undefined' ) + typeof a.mData=='undefined' ) { mTmp = false; } return a.aData['browser']; }, - "mDataProp": "browser" + "mData": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -66,9 +66,9 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "fnRender": function (a) { if ( a.iDataColumn != 1 ) { @@ -77,9 +77,9 @@ $(document).ready( function () { return a.aData['browser']; } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -94,9 +94,9 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "fnRender": function (a) { if ( a.aData.length != 5 ) { @@ -105,9 +105,9 @@ $(document).ready( function () { return a.aData['browser']; } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -121,16 +121,16 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, + { "mData": "engine" }, { - "mDataProp": "browser", + "mData": "browser", "fnRender": function (a) { return 'unittest'; } }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -144,21 +144,21 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, + { "mData": "engine" }, + { "mData": "browser" }, { - "mDataProp": "platform", + "mData": "platform", "fnRender": function (a) { return 'unittest1'; } }, { - "mDataProp": "version", + "mData": "version", "fnRender": function (a) { return 'unittest2'; } }, - { "mDataProp": "grade" } + { "mData": "grade" } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.iDataSort.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.iDataSort.js index 7b60e6bb..d82585e3 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.iDataSort.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.iDataSort.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "iDataSort": 4 }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "iDataSort": 4 }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -50,11 +50,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "iDataSort": 4 }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade", "iDataSort": 1 } + { "mData": "engine" }, + { "mData": "browser", "iDataSort": 4 }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade", "iDataSort": 1 } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sClass.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sClass.js index 68602ca0..c7efc466 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sClass.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sClass.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -28,11 +28,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform", "sClass": 'unittest' }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform", "sClass": 'unittest' }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -89,11 +89,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine", "sClass": 'unittest2' }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version", "sClass": 'unittest1' }, - { "mDataProp": "grade" } + { "mData": "engine", "sClass": 'unittest2' }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version", "sClass": 'unittest1' }, + { "mData": "grade" } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sName.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sName.js index 00cbd514..08fe49bc 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sName.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sName.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version", "sName": 'unit test' }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version", "sName": 'unit test' }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sTitle.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sTitle.js index ce18dbba..3f849cf4 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sTitle.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sTitle.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -37,11 +37,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "sTitle": 'unit test' }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "sTitle": 'unit test' }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); }, @@ -64,11 +64,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "sTitle": 'unit test 1' }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade", "sTitle": 'unit test 2' } + { "mData": "engine" }, + { "mData": "browser", "sTitle": 'unit test 1' }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade", "sTitle": 'unit test 2' } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sWidth.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sWidth.js index 1ade76f5..91ce1004 100755 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sWidth.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoColumns.sWidth.js @@ -12,11 +12,11 @@ $(document).ready( function () { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "bAutoWidth": false, "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser", "sWidth": '40%' }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser", "sWidth": '40%' }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -35,11 +35,11 @@ $(document).ready( function () { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "bAutoWidth": false, "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform", "sWidth": '20%' }, - { "mDataProp": "version", "sWidth": '30%' }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform", "sWidth": '20%' }, + { "mData": "version", "sWidth": '30%' }, + { "mData": "grade" } ] } ); }, @@ -59,11 +59,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version", "sWidth": '40%' }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version", "sWidth": '40%' }, + { "mData": "grade" } ] } ); }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoSearchCols.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoSearchCols.js index be399178..35d4e97b 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoSearchCols.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/aoSearchCols.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -39,11 +39,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "aoSearchCols": [ null, @@ -64,11 +64,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "aoSearchCols": [ null, @@ -89,11 +89,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "aoSearchCols": [ { "sSearch": ".*ML", "bEscapeRegex": false }, @@ -114,11 +114,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "aoSearchCols": [ { "sSearch": ".*ML", "bEscapeRegex": false }, @@ -139,11 +139,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "aoSearchCols": [ { "sSearch": ".*ML", "bEscapeRegex": false }, diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/asStripClasses.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/asStripClasses.js index 82f2bc8d..30270540 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/asStripClasses.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/asStripClasses.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -44,11 +44,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "asStripeClasses": [] } ); @@ -74,11 +74,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "asStripeClasses": [ 'test1', 'test2' ] } ); @@ -100,11 +100,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "asStripeClasses": [ 'test1', 'test2', 'test3', 'test4' ] } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bAutoWidth.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bAutoWidth.js index 55efdaa4..64a5c0e0 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bAutoWidth.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bAutoWidth.js @@ -12,11 +12,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -93,11 +93,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bAutoWidth": false } ); @@ -145,11 +145,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bAutoWidth": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bFilter.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bFilter.js index 0ee7573e..0a325f49 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bFilter.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bFilter.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -28,11 +28,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bFilter": false } ); @@ -48,11 +48,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bFilter": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bInfo.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bInfo.js index 33d85c3c..85886237 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bInfo.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bInfo.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -28,11 +28,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bInfo": false } ); @@ -48,11 +48,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bInfo": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bLengthChange.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bLengthChange.js index 69fc1b7c..cfba6024 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bLengthChange.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bLengthChange.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -51,11 +51,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bLengthChange": false } ); @@ -78,11 +78,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bLengthChange": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bPaginate.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bPaginate.js index f5225643..7c2a3c98 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bPaginate.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bPaginate.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -35,11 +35,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bPaginate": false } ); @@ -62,11 +62,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bPaginate": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bProcessing.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bProcessing.js index 77556160..c226fe07 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bProcessing.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bProcessing.js @@ -12,11 +12,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -54,11 +54,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bProcessing": true } ); @@ -99,11 +99,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bProcessing": false } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bServerSide.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bServerSide.js index c69f7d45..97689785 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bServerSide.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bServerSide.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSort.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSort.js index 5a827316..d5cfa965 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSort.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSort.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -70,11 +70,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bSort": false } ); @@ -102,11 +102,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bSort": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSortClasses.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSortClasses.js index 8c00c73b..9b127cb5 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSortClasses.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/bSortClasses.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -94,11 +94,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bSortClasses": false } ); @@ -136,11 +136,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bSortClasses": true } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnDrawCallback.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnDrawCallback.js index a6b1725e..58c2118f 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnDrawCallback.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnDrawCallback.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -35,11 +35,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnDrawCallback": function ( ) { mPass = arguments.length; @@ -62,11 +62,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnDrawCallback": function ( oSettings ) { mPass = oSettings; @@ -91,11 +91,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnDrawCallback": function ( ) { mPass++; diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnHeaderCallback.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnHeaderCallback.js index 0574d5fd..321335eb 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnHeaderCallback.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnHeaderCallback.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -33,11 +33,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( ) { mPass = arguments.length; @@ -62,11 +62,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { mPass++; @@ -93,11 +93,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { nHead.getElementsByTagName('th')[0].innerHTML = "Displaying "+(iEnd-iStart)+" records"; @@ -117,11 +117,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { if ( iStart != 0 ) @@ -144,11 +144,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { if ( iStart == 10 ) @@ -174,11 +174,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { if ( iEnd == 20 ) @@ -204,11 +204,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { if ( aiDisplay.length == 57 ) @@ -230,11 +230,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnHeaderCallback": function ( nHead, aasData, iStart, iEnd, aiDisplay ) { if ( aiDisplay.length == 9 ) diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnInitComplete.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnInitComplete.js index fdaddd07..f700607b 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnInitComplete.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnInitComplete.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -34,11 +34,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnInitComplete": function ( ) { mPass = arguments.length; @@ -57,11 +57,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnInitComplete": function ( oSettings ) { mPass = oSettings; @@ -81,11 +81,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnInitComplete": function ( ) { mPass++; @@ -115,11 +115,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnInitComplete": function ( ) { mPass = $('#example tbody tr').length; diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnRowCallback.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnRowCallback.js index 6c5a2f63..25c78120 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnRowCallback.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnRowCallback.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -34,11 +34,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnRowCallback": function ( nTr ) { mPass = arguments.length; @@ -59,11 +59,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnRowCallback": function ( nTr, asData, iDrawIndex, iDataIndex ) { mPass++; @@ -81,11 +81,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnRowCallback": function ( nTr, asData, iDrawIndex, iDataIndex ) { $(nTr).addClass('unit_test'); @@ -105,11 +105,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnRowCallback": function ( nTr, asData, iDrawIndex, iDataIndex ) { if ( asData.length != 5 ) @@ -131,11 +131,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnRowCallback": function ( nTr, asData, iDrawIndex, iDataIndex ) { if ( iCount != iDrawIndex ) diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnServerData.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnServerData.js index 8ab5e74a..f03deebd 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnServerData.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/fnServerData.js @@ -10,11 +10,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnServerData": function () { mPass = arguments.length; @@ -31,11 +31,11 @@ $(document).ready( function () { "bDestroy": true, "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnServerData": function (sUrl, aoData, fnCallback, oSettings) { mPass = sUrl == "../../../examples/ajax/sources/objects.txt"; @@ -52,11 +52,11 @@ $(document).ready( function () { "bDestroy": true, "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnServerData": function (sUrl, aoData, fnCallback, oSettings) { mPass = aoData.length==0; @@ -73,11 +73,11 @@ $(document).ready( function () { "bDestroy": true, "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "fnServerData": function (sUrl, aoData, fnCallback, oSettings) { mPass = typeof fnCallback == 'function'; diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/iDisplayLength.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/iDisplayLength.js index 01facc9a..47264e08 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/iDisplayLength.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/iDisplayLength.js @@ -6,11 +6,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); @@ -34,11 +34,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "iDisplayLength": 25 } ); @@ -60,11 +60,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "iDisplayLength": 100 } ); @@ -86,11 +86,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "iDisplayLength": 23 } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.oPaginate.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.oPaginate.js index 47abb711..3400bb58 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.oPaginate.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.oPaginate.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "sPaginationType": "full_numbers" } ); @@ -52,11 +52,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sPaginationType": "full_numbers", "oLanguage": { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfo.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfo.js index 60b234ea..6ad42910 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfo.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfo.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -35,11 +35,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit test" @@ -63,11 +63,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit _START_ test" @@ -84,11 +84,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit _END_ test" @@ -105,11 +105,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit _END_ test" @@ -126,11 +126,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit _START_ _END_ test" @@ -147,11 +147,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfo": "unit _START_ _END_ _TOTAL_ test" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoEmpty.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoEmpty.js index 423a0d46..116f3de6 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoEmpty.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoEmpty.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -40,11 +40,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfoEmpty": "unit test" @@ -75,11 +75,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfoEmpty": "unit _START_ _END_ _TOTAL_ test" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoPostFix.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoPostFix.js index 4c1c7faa..9f6687cc 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoPostFix.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sInfoPostFix.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -35,11 +35,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfoPostFix": "unit test" @@ -64,11 +64,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfoPostFix": "unit _START_ _END_ _TOTAL_ test" @@ -86,11 +86,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sInfoPostFix": "unit test" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sLengthMenu.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sLengthMenu.js index 38ee98d5..6abb0416 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sLengthMenu.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sLengthMenu.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -53,11 +53,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sLengthMenu": "unit test" @@ -84,11 +84,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sLengthMenu": "unit _MENU_ test" @@ -113,11 +113,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sLengthMenu": "_MENU_" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sProcessing.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sProcessing.js index 71e63620..5e072411 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sProcessing.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sProcessing.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ], "bProcessing": true } ); @@ -36,11 +36,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "bProcessing": true, "oLanguage": { diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sSearch.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sSearch.js index af741c90..57927929 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sSearch.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sSearch.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -42,11 +42,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sSearch": "unit test" @@ -71,11 +71,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sSearch": "" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sUrl.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sUrl.js index 69bbab6d..80d04727 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sUrl.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sUrl.js @@ -10,11 +10,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -33,11 +33,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sUrl": "../../../examples/examples_support/de_DE.txt" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sZeroRecords.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sZeroRecords.js index 9c63ca1c..26e17835 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sZeroRecords.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oLanguage.sZeroRecords.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -36,11 +36,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oLanguage": { "sZeroRecords": "unit test" diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oSearch.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oSearch.js index 5d098f67..cdcf1103 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oSearch.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/oSearch.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -35,11 +35,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oSearch": { "sSearch": "Mozilla" @@ -64,11 +64,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oSearch": { "sSearch": "DS", @@ -86,11 +86,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oSearch": { "sSearch": "Opera", @@ -108,11 +108,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oSearch": { "sSearch": "1.*", @@ -130,11 +130,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "oSearch": { "sSearch": "1.*", diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sAjaxSource.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sAjaxSource.js index c7c4545b..ea3f9836 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sAjaxSource.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sAjaxSource.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sDom.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sDom.js index cef29bb0..3cacaf3c 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sDom.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sDom.js @@ -8,11 +8,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -53,11 +53,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": '<"wrapper"flipt>' } ); @@ -110,11 +110,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": '<lf<t>ip>' } ); @@ -167,11 +167,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": 'frtip' } ); @@ -203,11 +203,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": 'lrtip' } ); @@ -241,11 +241,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": 'lfrtp' } ); @@ -277,11 +277,11 @@ $(document).ready( function () { $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sDom": 'lfrti' } ); diff --git a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sPaginationType.js b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sPaginationType.js index 684fb83e..e3b67dac 100644 --- a/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sPaginationType.js +++ b/wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/sPaginationType.js @@ -6,11 +6,11 @@ $(document).ready( function () { var oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumns": [ - { "mDataProp": "engine" }, - { "mDataProp": "browser" }, - { "mDataProp": "platform" }, - { "mDataProp": "version" }, - { "mDataProp": "grade" } + { "mData": "engine" }, + { "mData": "browser" }, + { "mData": "platform" }, + { "mData": "version" }, + { "mData": "grade" } ] } ); var oSettings = oTable.fnSettings(); @@ -69,11 +69,11 @@ $(document).ready( function () { oTable = $('#example').dataTable( { "sAjaxSource": "../../../examples/ajax/sources/objects.txt", "aoColumnDefs": [ - { "mDataProp": "engine", "aTargets": [0] }, - { "mDataProp": "browser", "aTargets": [1] }, - { "mDataProp": "platform", "aTargets": [2] }, - { "mDataProp": "version", "aTargets": [3] }, - { "mDataProp": "grade", "aTargets": [4] } + { "mData": "engine", "aTargets": [0] }, + { "mData": "browser", "aTargets": [1] }, + { "mData": "platform", "aTargets": [2] }, + { "mData": "version", "aTargets": [3] }, + { "mData": "grade", "aTargets": [4] } ], "sPaginationType": "full_numbers", "fnInitComplete": function () { diff --git a/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.css b/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.css new file mode 100644 index 00000000..9adaabb1 --- /dev/null +++ b/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.css @@ -0,0 +1,179 @@ + +div.dataTables_length label { + float: left; + text-align: left; +} + +div.dataTables_length select { + width: 75px; +} + +div.dataTables_filter label { + float: right; +} + +div.dataTables_info { + padding-top: 8px; +} + +div.dataTables_paginate { + float: right; + margin: 0; +} + +table.table { + clear: both; + margin-bottom: 6px !important; + max-width: none !important; +} + +table.table thead .sorting, +table.table thead .sorting_asc, +table.table thead .sorting_desc, +table.table thead .sorting_asc_disabled, +table.table thead .sorting_desc_disabled { + cursor: pointer; + *cursor: hand; +} + +table.table thead .sorting { background: url('images/sort_both.png') no-repeat center right; } +table.table thead .sorting_asc { background: url('images/sort_asc.png') no-repeat center right; } +table.table thead .sorting_desc { background: url('images/sort_desc.png') no-repeat center right; } + +table.table thead .sorting_asc_disabled { background: url('images/sort_asc_disabled.png') no-repeat center right; } +table.table thead .sorting_desc_disabled { background: url('images/sort_desc_disabled.png') no-repeat center right; } + +table.dataTable th:active { + outline: none; +} + +/* Scrolling */ +div.dataTables_scrollHead table { + margin-bottom: 0 !important; + border-bottom-left-radius: 0; + border-bottom-right-radius: 0; +} + +div.dataTables_scrollHead table thead tr:last-child th:first-child, +div.dataTables_scrollHead table thead tr:last-child td:first-child { + border-bottom-left-radius: 0 !important; + border-bottom-right-radius: 0 !important; +} + +div.dataTables_scrollBody table { + border-top: none; + margin-bottom: 0 !important; +} + +div.dataTables_scrollBody tbody tr:first-child th, +div.dataTables_scrollBody tbody tr:first-child td { + border-top: none; +} + +div.dataTables_scrollFoot table { + border-top: none; +} + + + + +/* + * TableTools styles + */ +.table tbody tr.active td, +.table tbody tr.active th { + background-color: #08C; + color: white; +} + +.table tbody tr.active:hover td, +.table tbody tr.active:hover th { + background-color: #0075b0 !important; +} + +.table-striped tbody tr.active:nth-child(odd) td, +.table-striped tbody tr.active:nth-child(odd) th { + background-color: #017ebc; +} + +table.DTTT_selectable tbody tr { + cursor: pointer; + *cursor: hand; +} + +div.DTTT .btn { + color: #333 !important; + font-size: 12px; +} + +div.DTTT .btn:hover { + text-decoration: none !important; +} + + +ul.DTTT_dropdown.dropdown-menu a { + color: #333 !important; /* needed only when demo_page.css is included */ +} + +ul.DTTT_dropdown.dropdown-menu li:hover a { + background-color: #0088cc; + color: white !important; +} + +/* TableTools information display */ +div.DTTT_print_info.modal { + height: 150px; + margin-top: -75px; + text-align: center; +} + +div.DTTT_print_info h6 { + font-weight: normal; + font-size: 28px; + line-height: 28px; + margin: 1em; +} + +div.DTTT_print_info p { + font-size: 14px; + line-height: 20px; +} + + + +/* + * FixedColumns styles + */ +div.DTFC_LeftHeadWrapper table, +div.DTFC_LeftFootWrapper table, +table.DTFC_Cloned tr.even { + background-color: white; +} + +div.DTFC_LeftHeadWrapper table { + margin-bottom: 0 !important; + border-top-right-radius: 0 !important; + border-bottom-left-radius: 0 !important; + border-bottom-right-radius: 0 !important; +} + +div.DTFC_LeftHeadWrapper table thead tr:last-child th:first-child, +div.DTFC_LeftHeadWrapper table thead tr:last-child td:first-child { + border-bottom-left-radius: 0 !important; + border-bottom-right-radius: 0 !important; +} + +div.DTFC_LeftBodyWrapper table { + border-top: none; + margin-bottom: 0 !important; +} + +div.DTFC_LeftBodyWrapper tbody tr:first-child th, +div.DTFC_LeftBodyWrapper tbody tr:first-child td { + border-top: none; +} + +div.DTFC_LeftFootWrapper table { + border-top: none; +} + diff --git a/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.js b/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.js new file mode 100644 index 00000000..328733f2 --- /dev/null +++ b/wqflask/wqflask/static/packages/DT_bootstrap/DT_bootstrap.js @@ -0,0 +1,159 @@ +/* Set the defaults for DataTables initialisation */ +$.extend( true, $.fn.dataTable.defaults, { + "sDom": "<'row-fluid'<'span6'l><'span6'f>r>t<'row-fluid'<'span6'i><'span6'p>>", + "sPaginationType": "bootstrap", + "oLanguage": { + "sLengthMenu": "_MENU_ records per page" + } +} ); + + +/* Default class modification */ +$.extend( $.fn.dataTableExt.oStdClasses, { + "sWrapper": "dataTables_wrapper form-inline" +} ); + + +/* API method to get paging information */ +$.fn.dataTableExt.oApi.fnPagingInfo = function ( oSettings ) +{ + return { + "iStart": oSettings._iDisplayStart, + "iEnd": oSettings.fnDisplayEnd(), + "iLength": oSettings._iDisplayLength, + "iTotal": oSettings.fnRecordsTotal(), + "iFilteredTotal": oSettings.fnRecordsDisplay(), + "iPage": oSettings._iDisplayLength === -1 ? + 0 : Math.ceil( oSettings._iDisplayStart / oSettings._iDisplayLength ), + "iTotalPages": oSettings._iDisplayLength === -1 ? + 0 : Math.ceil( oSettings.fnRecordsDisplay() / oSettings._iDisplayLength ) + }; +}; + + +/* Bootstrap style pagination control */ +$.extend( $.fn.dataTableExt.oPagination, { + "bootstrap": { + "fnInit": function( oSettings, nPaging, fnDraw ) { + var oLang = oSettings.oLanguage.oPaginate; + var fnClickHandler = function ( e ) { + e.preventDefault(); + if ( oSettings.oApi._fnPageChange(oSettings, e.data.action) ) { + fnDraw( oSettings ); + } + }; + + $(nPaging).addClass('pagination').append( + '<ul>'+ + '<li class="prev disabled"><a href="#">← '+oLang.sPrevious+'</a></li>'+ + '<li class="next disabled"><a href="#">'+oLang.sNext+' → </a></li>'+ + '</ul>' + ); + var els = $('a', nPaging); + $(els[0]).bind( 'click.DT', { action: "previous" }, fnClickHandler ); + $(els[1]).bind( 'click.DT', { action: "next" }, fnClickHandler ); + }, + + "fnUpdate": function ( oSettings, fnDraw ) { + var iListLength = 5; + var oPaging = oSettings.oInstance.fnPagingInfo(); + var an = oSettings.aanFeatures.p; + var i, ien, j, sClass, iStart, iEnd, iHalf=Math.floor(iListLength/2); + + if ( oPaging.iTotalPages < iListLength) { + iStart = 1; + iEnd = oPaging.iTotalPages; + } + else if ( oPaging.iPage <= iHalf ) { + iStart = 1; + iEnd = iListLength; + } else if ( oPaging.iPage >= (oPaging.iTotalPages-iHalf) ) { + iStart = oPaging.iTotalPages - iListLength + 1; + iEnd = oPaging.iTotalPages; + } else { + iStart = oPaging.iPage - iHalf + 1; + iEnd = iStart + iListLength - 1; + } + + for ( i=0, ien=an.length ; i<ien ; i++ ) { + // Remove the middle elements + $('li:gt(0)', an[i]).filter(':not(:last)').remove(); + + // Add the new list items and their event handlers + for ( j=iStart ; j<=iEnd ; j++ ) { + sClass = (j==oPaging.iPage+1) ? 'class="active"' : ''; + $('<li '+sClass+'><a href="#">'+j+'</a></li>') + .insertBefore( $('li:last', an[i])[0] ) + .bind('click', function (e) { + e.preventDefault(); + oSettings._iDisplayStart = (parseInt($('a', this).text(),10)-1) * oPaging.iLength; + fnDraw( oSettings ); + } ); + } + + // Add / remove disabled classes from the static elements + if ( oPaging.iPage === 0 ) { + $('li:first', an[i]).addClass('disabled'); + } else { + $('li:first', an[i]).removeClass('disabled'); + } + + if ( oPaging.iPage === oPaging.iTotalPages-1 || oPaging.iTotalPages === 0 ) { + $('li:last', an[i]).addClass('disabled'); + } else { + $('li:last', an[i]).removeClass('disabled'); + } + } + } + } +} ); + + +/* + * TableTools Bootstrap compatibility + * Required TableTools 2.1+ + */ +if ( $.fn.DataTable.TableTools ) { + // Set the classes that TableTools uses to something suitable for Bootstrap + $.extend( true, $.fn.DataTable.TableTools.classes, { + "container": "DTTT btn-group", + "buttons": { + "normal": "btn", + "disabled": "disabled" + }, + "collection": { + "container": "DTTT_dropdown dropdown-menu", + "buttons": { + "normal": "", + "disabled": "disabled" + } + }, + "print": { + "info": "DTTT_print_info modal" + }, + "select": { + "row": "active" + } + } ); + + // Have the collection use a bootstrap compatible dropdown + $.extend( true, $.fn.DataTable.TableTools.DEFAULTS.oTags, { + "collection": { + "container": "ul", + "button": "li", + "liner": "a" + } + } ); +} + + +/* Table initialisation */ +$(document).ready(function() { + $('#example').dataTable( { + "sDom": "<'row'<'span6'l><'span6'f>r>t<'row'<'span6'i><'span6'p>>", + "sPaginationType": "bootstrap", + "oLanguage": { + "sLengthMenu": "_MENU_ records per page" + } + } ); +} );
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/DT_bootstrap/images b/wqflask/wqflask/static/packages/DT_bootstrap/images new file mode 120000 index 00000000..f5f1b7d0 --- /dev/null +++ b/wqflask/wqflask/static/packages/DT_bootstrap/images @@ -0,0 +1 @@ +../../new/packages/DataTables/images/
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.css b/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.css new file mode 100644 index 00000000..9259d26d --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.css @@ -0,0 +1,1058 @@ +/*! + * Bootstrap Responsive v2.1.1 + * + * Copyright 2012 Twitter, Inc + * Licensed under the Apache License v2.0 + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Designed and built with all the love in the world @twitter by @mdo and @fat. + */ + +.clearfix { + *zoom: 1; +} + +.clearfix:before, +.clearfix:after { + display: table; + line-height: 0; + content: ""; +} + +.clearfix:after { + clear: both; +} + +.hide-text { + font: 0/0 a; + color: transparent; + text-shadow: none; + background-color: transparent; + border: 0; +} + +.input-block-level { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.hidden { + display: none; + visibility: hidden; +} + +.visible-phone { + display: none !important; +} + +.visible-tablet { + display: none !important; +} + +.hidden-desktop { + display: none !important; +} + +.visible-desktop { + display: inherit !important; +} + +@media (min-width: 768px) and (max-width: 979px) { + .hidden-desktop { + display: inherit !important; + } + .visible-desktop { + display: none !important ; + } + .visible-tablet { + display: inherit !important; + } + .hidden-tablet { + display: none !important; + } +} + +@media (max-width: 767px) { + .hidden-desktop { + display: inherit !important; + } + .visible-desktop { + display: none !important; + } + .visible-phone { + display: inherit !important; + } + .hidden-phone { + display: none !important; + } +} + +@media (min-width: 1200px) { + .row { + margin-left: -30px; + *zoom: 1; + } + .row:before, + .row:after { + display: table; + line-height: 0; + content: ""; + } + .row:after { + clear: both; + } + [class*="span"] { + float: left; + min-height: 1px; + margin-left: 30px; + } + .container, + .navbar-static-top .container, + .navbar-fixed-top .container, + .navbar-fixed-bottom .container { + width: 1170px; + } + .span12 { + width: 1170px; + } + .span11 { + width: 1070px; + } + .span10 { + width: 970px; + } + .span9 { + width: 870px; + } + .span8 { + width: 770px; + } + .span7 { + width: 670px; + } + .span6 { + width: 570px; + } + .span5 { + width: 470px; + } + .span4 { + width: 370px; + } + .span3 { + width: 270px; + } + .span2 { + width: 170px; + } + .span1 { + width: 70px; + } + .offset12 { + margin-left: 1230px; + } + .offset11 { + margin-left: 1130px; + } + .offset10 { + margin-left: 1030px; + } + .offset9 { + margin-left: 930px; + } + .offset8 { + margin-left: 830px; + } + .offset7 { + margin-left: 730px; + } + .offset6 { + margin-left: 630px; + } + .offset5 { + margin-left: 530px; + } + .offset4 { + margin-left: 430px; + } + .offset3 { + margin-left: 330px; + } + .offset2 { + margin-left: 230px; + } + .offset1 { + margin-left: 130px; + } + .row-fluid { + width: 100%; + *zoom: 1; + } + .row-fluid:before, + .row-fluid:after { + display: table; + line-height: 0; + content: ""; + } + .row-fluid:after { + clear: both; + } + .row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.564102564102564%; + *margin-left: 2.5109110747408616%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .row-fluid [class*="span"]:first-child { + margin-left: 0; + } + .row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; + } + .row-fluid .span11 { + width: 91.45299145299145%; + *width: 91.39979996362975%; + } + .row-fluid .span10 { + width: 82.90598290598291%; + *width: 82.8527914166212%; + } + .row-fluid .span9 { + width: 74.35897435897436%; + *width: 74.30578286961266%; + } + .row-fluid .span8 { + width: 65.81196581196582%; + *width: 65.75877432260411%; + } + .row-fluid .span7 { + width: 57.26495726495726%; + *width: 57.21176577559556%; + } + .row-fluid .span6 { + width: 48.717948717948715%; + *width: 48.664757228587014%; + } + .row-fluid .span5 { + width: 40.17094017094017%; + *width: 40.11774868157847%; + } + .row-fluid .span4 { + width: 31.623931623931625%; + *width: 31.570740134569924%; + } + .row-fluid .span3 { + width: 23.076923076923077%; + *width: 23.023731587561375%; + } + .row-fluid .span2 { + width: 14.52991452991453%; + *width: 14.476723040552828%; + } + .row-fluid .span1 { + width: 5.982905982905983%; + *width: 5.929714493544281%; + } + .row-fluid .offset12 { + margin-left: 105.12820512820512%; + *margin-left: 105.02182214948171%; + } + .row-fluid .offset12:first-child { + margin-left: 102.56410256410257%; + *margin-left: 102.45771958537915%; + } + .row-fluid .offset11 { + margin-left: 96.58119658119658%; + *margin-left: 96.47481360247316%; + } + .row-fluid .offset11:first-child { + margin-left: 94.01709401709402%; + *margin-left: 93.91071103837061%; + } + .row-fluid .offset10 { + margin-left: 88.03418803418803%; + *margin-left: 87.92780505546462%; + } + .row-fluid .offset10:first-child { + margin-left: 85.47008547008548%; + *margin-left: 85.36370249136206%; + } + .row-fluid .offset9 { + margin-left: 79.48717948717949%; + *margin-left: 79.38079650845607%; + } + .row-fluid .offset9:first-child { + margin-left: 76.92307692307693%; + *margin-left: 76.81669394435352%; + } + .row-fluid .offset8 { + margin-left: 70.94017094017094%; + *margin-left: 70.83378796144753%; + } + .row-fluid .offset8:first-child { + margin-left: 68.37606837606839%; + *margin-left: 68.26968539734497%; + } + .row-fluid .offset7 { + margin-left: 62.393162393162385%; + *margin-left: 62.28677941443899%; + } + .row-fluid .offset7:first-child { + margin-left: 59.82905982905982%; + *margin-left: 59.72267685033642%; + } + .row-fluid .offset6 { + margin-left: 53.84615384615384%; + *margin-left: 53.739770867430444%; + } + .row-fluid .offset6:first-child { + margin-left: 51.28205128205128%; + *margin-left: 51.175668303327875%; + } + .row-fluid .offset5 { + margin-left: 45.299145299145295%; + *margin-left: 45.1927623204219%; + } + .row-fluid .offset5:first-child { + margin-left: 42.73504273504273%; + *margin-left: 42.62865975631933%; + } + .row-fluid .offset4 { + margin-left: 36.75213675213675%; + *margin-left: 36.645753773413354%; + } + .row-fluid .offset4:first-child { + margin-left: 34.18803418803419%; + *margin-left: 34.081651209310785%; + } + .row-fluid .offset3 { + margin-left: 28.205128205128204%; + *margin-left: 28.0987452264048%; + } + .row-fluid .offset3:first-child { + margin-left: 25.641025641025642%; + *margin-left: 25.53464266230224%; + } + .row-fluid .offset2 { + margin-left: 19.65811965811966%; + *margin-left: 19.551736679396257%; + } + .row-fluid .offset2:first-child { + margin-left: 17.094017094017094%; + *margin-left: 16.98763411529369%; + } + .row-fluid .offset1 { + margin-left: 11.11111111111111%; + *margin-left: 11.004728132387708%; + } + .row-fluid .offset1:first-child { + margin-left: 8.547008547008547%; + *margin-left: 8.440625568285142%; + } + input, + textarea, + .uneditable-input { + margin-left: 0; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 30px; + } + input.span12, + textarea.span12, + .uneditable-input.span12 { + width: 1156px; + } + input.span11, + textarea.span11, + .uneditable-input.span11 { + width: 1056px; + } + input.span10, + textarea.span10, + .uneditable-input.span10 { + width: 956px; + } + input.span9, + textarea.span9, + .uneditable-input.span9 { + width: 856px; + } + input.span8, + textarea.span8, + .uneditable-input.span8 { + width: 756px; + } + input.span7, + textarea.span7, + .uneditable-input.span7 { + width: 656px; + } + input.span6, + textarea.span6, + .uneditable-input.span6 { + width: 556px; + } + input.span5, + textarea.span5, + .uneditable-input.span5 { + width: 456px; + } + input.span4, + textarea.span4, + .uneditable-input.span4 { + width: 356px; + } + input.span3, + textarea.span3, + .uneditable-input.span3 { + width: 256px; + } + input.span2, + textarea.span2, + .uneditable-input.span2 { + width: 156px; + } + input.span1, + textarea.span1, + .uneditable-input.span1 { + width: 56px; + } + .thumbnails { + margin-left: -30px; + } + .thumbnails > li { + margin-left: 30px; + } + .row-fluid .thumbnails { + margin-left: 0; + } +} + +@media (min-width: 768px) and (max-width: 979px) { + .row { + margin-left: -20px; + *zoom: 1; + } + .row:before, + .row:after { + display: table; + line-height: 0; + content: ""; + } + .row:after { + clear: both; + } + [class*="span"] { + float: left; + min-height: 1px; + margin-left: 20px; + } + .container, + .navbar-static-top .container, + .navbar-fixed-top .container, + .navbar-fixed-bottom .container { + width: 724px; + } + .span12 { + width: 724px; + } + .span11 { + width: 662px; + } + .span10 { + width: 600px; + } + .span9 { + width: 538px; + } + .span8 { + width: 476px; + } + .span7 { + width: 414px; + } + .span6 { + width: 352px; + } + .span5 { + width: 290px; + } + .span4 { + width: 228px; + } + .span3 { + width: 166px; + } + .span2 { + width: 104px; + } + .span1 { + width: 42px; + } + .offset12 { + margin-left: 764px; + } + .offset11 { + margin-left: 702px; + } + .offset10 { + margin-left: 640px; + } + .offset9 { + margin-left: 578px; + } + .offset8 { + margin-left: 516px; + } + .offset7 { + margin-left: 454px; + } + .offset6 { + margin-left: 392px; + } + .offset5 { + margin-left: 330px; + } + .offset4 { + margin-left: 268px; + } + .offset3 { + margin-left: 206px; + } + .offset2 { + margin-left: 144px; + } + .offset1 { + margin-left: 82px; + } + .row-fluid { + width: 100%; + *zoom: 1; + } + .row-fluid:before, + .row-fluid:after { + display: table; + line-height: 0; + content: ""; + } + .row-fluid:after { + clear: both; + } + .row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.7624309392265194%; + *margin-left: 2.709239449864817%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .row-fluid [class*="span"]:first-child { + margin-left: 0; + } + .row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; + } + .row-fluid .span11 { + width: 91.43646408839778%; + *width: 91.38327259903608%; + } + .row-fluid .span10 { + width: 82.87292817679558%; + *width: 82.81973668743387%; + } + .row-fluid .span9 { + width: 74.30939226519337%; + *width: 74.25620077583166%; + } + .row-fluid .span8 { + width: 65.74585635359117%; + *width: 65.69266486422946%; + } + .row-fluid .span7 { + width: 57.18232044198895%; + *width: 57.12912895262725%; + } + .row-fluid .span6 { + width: 48.61878453038674%; + *width: 48.56559304102504%; + } + .row-fluid .span5 { + width: 40.05524861878453%; + *width: 40.00205712942283%; + } + .row-fluid .span4 { + width: 31.491712707182323%; + *width: 31.43852121782062%; + } + .row-fluid .span3 { + width: 22.92817679558011%; + *width: 22.87498530621841%; + } + .row-fluid .span2 { + width: 14.3646408839779%; + *width: 14.311449394616199%; + } + .row-fluid .span1 { + width: 5.801104972375691%; + *width: 5.747913483013988%; + } + .row-fluid .offset12 { + margin-left: 105.52486187845304%; + *margin-left: 105.41847889972962%; + } + .row-fluid .offset12:first-child { + margin-left: 102.76243093922652%; + *margin-left: 102.6560479605031%; + } + .row-fluid .offset11 { + margin-left: 96.96132596685082%; + *margin-left: 96.8549429881274%; + } + .row-fluid .offset11:first-child { + margin-left: 94.1988950276243%; + *margin-left: 94.09251204890089%; + } + .row-fluid .offset10 { + margin-left: 88.39779005524862%; + *margin-left: 88.2914070765252%; + } + .row-fluid .offset10:first-child { + margin-left: 85.6353591160221%; + *margin-left: 85.52897613729868%; + } + .row-fluid .offset9 { + margin-left: 79.8342541436464%; + *margin-left: 79.72787116492299%; + } + .row-fluid .offset9:first-child { + margin-left: 77.07182320441989%; + *margin-left: 76.96544022569647%; + } + .row-fluid .offset8 { + margin-left: 71.2707182320442%; + *margin-left: 71.16433525332079%; + } + .row-fluid .offset8:first-child { + margin-left: 68.50828729281768%; + *margin-left: 68.40190431409427%; + } + .row-fluid .offset7 { + margin-left: 62.70718232044199%; + *margin-left: 62.600799341718584%; + } + .row-fluid .offset7:first-child { + margin-left: 59.94475138121547%; + *margin-left: 59.838368402492065%; + } + .row-fluid .offset6 { + margin-left: 54.14364640883978%; + *margin-left: 54.037263430116376%; + } + .row-fluid .offset6:first-child { + margin-left: 51.38121546961326%; + *margin-left: 51.27483249088986%; + } + .row-fluid .offset5 { + margin-left: 45.58011049723757%; + *margin-left: 45.47372751851417%; + } + .row-fluid .offset5:first-child { + margin-left: 42.81767955801105%; + *margin-left: 42.71129657928765%; + } + .row-fluid .offset4 { + margin-left: 37.01657458563536%; + *margin-left: 36.91019160691196%; + } + .row-fluid .offset4:first-child { + margin-left: 34.25414364640884%; + *margin-left: 34.14776066768544%; + } + .row-fluid .offset3 { + margin-left: 28.45303867403315%; + *margin-left: 28.346655695309746%; + } + .row-fluid .offset3:first-child { + margin-left: 25.69060773480663%; + *margin-left: 25.584224756083227%; + } + .row-fluid .offset2 { + margin-left: 19.88950276243094%; + *margin-left: 19.783119783707537%; + } + .row-fluid .offset2:first-child { + margin-left: 17.12707182320442%; + *margin-left: 17.02068884448102%; + } + .row-fluid .offset1 { + margin-left: 11.32596685082873%; + *margin-left: 11.219583872105325%; + } + .row-fluid .offset1:first-child { + margin-left: 8.56353591160221%; + *margin-left: 8.457152932878806%; + } + input, + textarea, + .uneditable-input { + margin-left: 0; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 20px; + } + input.span12, + textarea.span12, + .uneditable-input.span12 { + width: 710px; + } + input.span11, + textarea.span11, + .uneditable-input.span11 { + width: 648px; + } + input.span10, + textarea.span10, + .uneditable-input.span10 { + width: 586px; + } + input.span9, + textarea.span9, + .uneditable-input.span9 { + width: 524px; + } + input.span8, + textarea.span8, + .uneditable-input.span8 { + width: 462px; + } + input.span7, + textarea.span7, + .uneditable-input.span7 { + width: 400px; + } + input.span6, + textarea.span6, + .uneditable-input.span6 { + width: 338px; + } + input.span5, + textarea.span5, + .uneditable-input.span5 { + width: 276px; + } + input.span4, + textarea.span4, + .uneditable-input.span4 { + width: 214px; + } + input.span3, + textarea.span3, + .uneditable-input.span3 { + width: 152px; + } + input.span2, + textarea.span2, + .uneditable-input.span2 { + width: 90px; + } + input.span1, + textarea.span1, + .uneditable-input.span1 { + width: 28px; + } +} + +@media (max-width: 767px) { + body { + padding-right: 20px; + padding-left: 20px; + } + .navbar-fixed-top, + .navbar-fixed-bottom, + .navbar-static-top { + margin-right: -20px; + margin-left: -20px; + } + .container-fluid { + padding: 0; + } + .dl-horizontal dt { + float: none; + width: auto; + clear: none; + text-align: left; + } + .dl-horizontal dd { + margin-left: 0; + } + .container { + width: auto; + } + .row-fluid { + width: 100%; + } + .row, + .thumbnails { + margin-left: 0; + } + .thumbnails > li { + float: none; + margin-left: 0; + } + [class*="span"], + .row-fluid [class*="span"] { + display: block; + float: none; + width: 100%; + margin-left: 0; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .span12, + .row-fluid .span12 { + width: 100%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .input-large, + .input-xlarge, + .input-xxlarge, + input[class*="span"], + select[class*="span"], + textarea[class*="span"], + .uneditable-input { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .input-prepend input, + .input-append input, + .input-prepend input[class*="span"], + .input-append input[class*="span"] { + display: inline-block; + width: auto; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 0; + } + .modal { + position: fixed; + top: 20px; + right: 20px; + left: 20px; + width: auto; + margin: 0; + } + .modal.fade.in { + top: auto; + } +} + +@media (max-width: 480px) { + .nav-collapse { + -webkit-transform: translate3d(0, 0, 0); + } + .page-header h1 small { + display: block; + line-height: 20px; + } + input[type="checkbox"], + input[type="radio"] { + border: 1px solid #ccc; + } + .form-horizontal .control-label { + float: none; + width: auto; + padding-top: 0; + text-align: left; + } + .form-horizontal .controls { + margin-left: 0; + } + .form-horizontal .control-list { + padding-top: 0; + } + .form-horizontal .form-actions { + padding-right: 10px; + padding-left: 10px; + } + .modal { + top: 10px; + right: 10px; + left: 10px; + } + .modal-header .close { + padding: 10px; + margin: -10px; + } + .carousel-caption { + position: static; + } +} + +@media (max-width: 979px) { + body { + padding-top: 0; + } + .navbar-fixed-top, + .navbar-fixed-bottom { + position: static; + } + .navbar-fixed-top { + margin-bottom: 20px; + } + .navbar-fixed-bottom { + margin-top: 20px; + } + .navbar-fixed-top .navbar-inner, + .navbar-fixed-bottom .navbar-inner { + padding: 5px; + } + .navbar .container { + width: auto; + padding: 0; + } + .navbar .brand { + padding-right: 10px; + padding-left: 10px; + margin: 0 0 0 -5px; + } + .nav-collapse { + clear: both; + } + .nav-collapse .nav { + float: none; + margin: 0 0 10px; + } + .nav-collapse .nav > li { + float: none; + } + .nav-collapse .nav > li > a { + margin-bottom: 2px; + } + .nav-collapse .nav > .divider-vertical { + display: none; + } + .nav-collapse .nav .nav-header { + color: #777777; + text-shadow: none; + } + .nav-collapse .nav > li > a, + .nav-collapse .dropdown-menu a { + padding: 9px 15px; + font-weight: bold; + color: #777777; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; + } + .nav-collapse .btn { + padding: 4px 10px 4px; + font-weight: normal; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + } + .nav-collapse .dropdown-menu li + li a { + margin-bottom: 2px; + } + .nav-collapse .nav > li > a:hover, + .nav-collapse .dropdown-menu a:hover { + background-color: #f2f2f2; + } + .navbar-inverse .nav-collapse .nav > li > a:hover, + .navbar-inverse .nav-collapse .dropdown-menu a:hover { + background-color: #111111; + } + .nav-collapse.in .btn-group { + padding: 0; + margin-top: 5px; + } + .nav-collapse .dropdown-menu { + position: static; + top: auto; + left: auto; + display: block; + float: none; + max-width: none; + padding: 0; + margin: 0 15px; + background-color: transparent; + border: none; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; + } + .nav-collapse .dropdown-menu:before, + .nav-collapse .dropdown-menu:after { + display: none; + } + .nav-collapse .dropdown-menu .divider { + display: none; + } + .nav-collapse .nav > li > .dropdown-menu:before, + .nav-collapse .nav > li > .dropdown-menu:after { + display: none; + } + .nav-collapse .navbar-form, + .nav-collapse .navbar-search { + float: none; + padding: 10px 15px; + margin: 10px 0; + border-top: 1px solid #f2f2f2; + border-bottom: 1px solid #f2f2f2; + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + } + .navbar-inverse .nav-collapse .navbar-form, + .navbar-inverse .nav-collapse .navbar-search { + border-top-color: #111111; + border-bottom-color: #111111; + } + .navbar .nav-collapse .nav.pull-right { + float: none; + margin-left: 0; + } + .nav-collapse, + .nav-collapse.collapse { + height: 0; + overflow: hidden; + } + .navbar .btn-navbar { + display: block; + } + .navbar-static .navbar-inner { + padding-right: 10px; + padding-left: 10px; + } +} + +@media (min-width: 980px) { + .nav-collapse.collapse { + height: auto !important; + overflow: visible !important; + } +} diff --git a/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.min.css b/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.min.css new file mode 100644 index 00000000..7b0158da --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/css/bootstrap-responsive.min.css @@ -0,0 +1,9 @@ +/*! + * Bootstrap Responsive v2.1.1 + * + * Copyright 2012 Twitter, Inc + * Licensed under the Apache License v2.0 + * 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+.container, +.navbar-static-top .container, +.navbar-fixed-top .container, +.navbar-fixed-bottom .container { + width: 940px; +} + +.span12 { + width: 940px; +} + +.span11 { + width: 860px; +} + +.span10 { + width: 780px; +} + +.span9 { + width: 700px; +} + +.span8 { + width: 620px; +} + +.span7 { + width: 540px; +} + +.span6 { + width: 460px; +} + +.span5 { + width: 380px; +} + +.span4 { + width: 300px; +} + +.span3 { + width: 220px; +} + +.span2 { + width: 140px; +} + +.span1 { + width: 60px; +} + +.offset12 { + margin-left: 980px; +} + +.offset11 { + margin-left: 900px; +} + +.offset10 { + margin-left: 820px; +} + +.offset9 { + margin-left: 740px; +} + +.offset8 { + margin-left: 660px; +} + +.offset7 { + margin-left: 580px; +} + +.offset6 { + margin-left: 500px; +} + +.offset5 { + margin-left: 420px; +} + +.offset4 { + margin-left: 340px; +} + +.offset3 { + margin-left: 260px; +} + +.offset2 { + margin-left: 180px; +} + +.offset1 { + margin-left: 100px; +} + +.row-fluid { + width: 100%; + *zoom: 1; +} + +.row-fluid:before, +.row-fluid:after { + display: table; + line-height: 0; + content: ""; +} + +.row-fluid:after { + clear: both; +} + +.row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.127659574468085%; + *margin-left: 2.074468085106383%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.row-fluid [class*="span"]:first-child { + margin-left: 0; +} + +.row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; +} + +.row-fluid .span11 { + width: 91.48936170212765%; + *width: 91.43617021276594%; +} + +.row-fluid .span10 { + width: 82.97872340425532%; + *width: 82.92553191489361%; +} + +.row-fluid .span9 { + width: 74.46808510638297%; + *width: 74.41489361702126%; +} + +.row-fluid .span8 { + width: 65.95744680851064%; + *width: 65.90425531914893%; +} + +.row-fluid .span7 { + width: 57.44680851063829%; + *width: 57.39361702127659%; +} + +.row-fluid .span6 { + width: 48.93617021276595%; + *width: 48.88297872340425%; +} + +.row-fluid .span5 { + width: 40.42553191489362%; + *width: 40.37234042553192%; +} + +.row-fluid .span4 { + width: 31.914893617021278%; + *width: 31.861702127659576%; +} + +.row-fluid .span3 { + width: 23.404255319148934%; + *width: 23.351063829787233%; +} + +.row-fluid .span2 { + width: 14.893617021276595%; + *width: 14.840425531914894%; +} + +.row-fluid .span1 { + width: 6.382978723404255%; + *width: 6.329787234042553%; +} + +.row-fluid .offset12 { + margin-left: 104.25531914893617%; + *margin-left: 104.14893617021275%; +} + +.row-fluid .offset12:first-child { + margin-left: 102.12765957446808%; + *margin-left: 102.02127659574467%; +} + +.row-fluid .offset11 { + margin-left: 95.74468085106382%; + *margin-left: 95.6382978723404%; +} + +.row-fluid .offset11:first-child { + margin-left: 93.61702127659574%; + *margin-left: 93.51063829787232%; +} + +.row-fluid .offset10 { + margin-left: 87.23404255319149%; + *margin-left: 87.12765957446807%; +} + +.row-fluid .offset10:first-child { + margin-left: 85.1063829787234%; + *margin-left: 84.99999999999999%; +} + +.row-fluid .offset9 { + margin-left: 78.72340425531914%; + *margin-left: 78.61702127659572%; +} + +.row-fluid .offset9:first-child { + margin-left: 76.59574468085106%; + *margin-left: 76.48936170212764%; +} + +.row-fluid .offset8 { + margin-left: 70.2127659574468%; + *margin-left: 70.10638297872339%; +} + +.row-fluid .offset8:first-child { + margin-left: 68.08510638297872%; + *margin-left: 67.9787234042553%; +} + +.row-fluid .offset7 { + margin-left: 61.70212765957446%; + *margin-left: 61.59574468085106%; +} + +.row-fluid .offset7:first-child { + margin-left: 59.574468085106375%; + *margin-left: 59.46808510638297%; +} + +.row-fluid .offset6 { + margin-left: 53.191489361702125%; + *margin-left: 53.085106382978715%; +} + +.row-fluid .offset6:first-child { + margin-left: 51.063829787234035%; + *margin-left: 50.95744680851063%; +} + +.row-fluid .offset5 { + margin-left: 44.68085106382979%; + *margin-left: 44.57446808510638%; +} + +.row-fluid .offset5:first-child { + margin-left: 42.5531914893617%; + *margin-left: 42.4468085106383%; +} + +.row-fluid .offset4 { + margin-left: 36.170212765957444%; + *margin-left: 36.06382978723405%; +} + +.row-fluid .offset4:first-child { + margin-left: 34.04255319148936%; + *margin-left: 33.93617021276596%; +} + +.row-fluid .offset3 { + margin-left: 27.659574468085104%; + *margin-left: 27.5531914893617%; +} + +.row-fluid .offset3:first-child { + margin-left: 25.53191489361702%; + *margin-left: 25.425531914893618%; +} + +.row-fluid .offset2 { + margin-left: 19.148936170212764%; + *margin-left: 19.04255319148936%; +} + +.row-fluid .offset2:first-child { + margin-left: 17.02127659574468%; + *margin-left: 16.914893617021278%; +} + +.row-fluid .offset1 { + margin-left: 10.638297872340425%; + *margin-left: 10.53191489361702%; +} + +.row-fluid .offset1:first-child { + margin-left: 8.51063829787234%; + *margin-left: 8.404255319148938%; +} + +[class*="span"].hide, +.row-fluid [class*="span"].hide { + display: none; +} + +[class*="span"].pull-right, +.row-fluid [class*="span"].pull-right { + float: right; +} + +.container { + margin-right: auto; + margin-left: auto; + *zoom: 1; +} + +.container:before, +.container:after { + display: table; + line-height: 0; + content: ""; +} + +.container:after { + clear: both; +} + +.container-fluid { + padding-right: 20px; + padding-left: 20px; + *zoom: 1; +} + +.container-fluid:before, +.container-fluid:after { + display: table; + line-height: 0; + content: ""; +} + +.container-fluid:after { + clear: both; +} + +p { + margin: 0 0 10px; +} + +.lead { + margin-bottom: 20px; + font-size: 21px; + font-weight: 200; + line-height: 30px; +} + +small { + font-size: 85%; +} + +strong { + font-weight: bold; +} + +em { + font-style: italic; +} + +cite { + font-style: normal; +} + +.muted { + color: #999999; +} + +.text-warning { + color: #c09853; +} + +.text-error { + color: #b94a48; +} + +.text-info { + color: #3a87ad; +} + +.text-success { + color: #468847; +} + +h1, +h2, +h3, +h4, +h5, +h6 { + margin: 10px 0; + font-family: inherit; + font-weight: bold; + line-height: 1; + color: inherit; + text-rendering: optimizelegibility; +} + +h1 small, +h2 small, +h3 small, +h4 small, +h5 small, +h6 small { + font-weight: normal; + line-height: 1; + color: #999999; +} + +h1 { + font-size: 36px; + line-height: 40px; +} + +h2 { + font-size: 30px; + line-height: 40px; +} + +h3 { + font-size: 24px; + line-height: 40px; +} + +h4 { + font-size: 18px; + line-height: 20px; +} + +h5 { + font-size: 14px; + line-height: 20px; +} + +h6 { + font-size: 12px; + line-height: 20px; +} + +h1 small { + font-size: 24px; +} + +h2 small { + font-size: 18px; +} + +h3 small { + font-size: 14px; +} + +h4 small { + font-size: 14px; +} + +.page-header { + padding-bottom: 9px; + margin: 20px 0 30px; + border-bottom: 1px solid #eeeeee; +} + +ul, +ol { + padding: 0; + margin: 0 0 10px 25px; +} + +ul ul, +ul ol, +ol ol, +ol ul { + margin-bottom: 0; +} + +li { + line-height: 20px; +} + +ul.unstyled, +ol.unstyled { + margin-left: 0; + list-style: none; +} + +dl { + margin-bottom: 20px; +} + +dt, +dd { + line-height: 20px; +} + +dt { + font-weight: bold; +} + +dd { + margin-left: 10px; +} + +.dl-horizontal { + *zoom: 1; +} + +.dl-horizontal:before, +.dl-horizontal:after { + display: table; + line-height: 0; + content: ""; +} + +.dl-horizontal:after { + clear: both; +} + +.dl-horizontal dt { + float: left; + width: 160px; + overflow: hidden; + clear: left; + text-align: right; + text-overflow: ellipsis; + white-space: nowrap; +} + +.dl-horizontal dd { + margin-left: 180px; +} + +hr { + margin: 20px 0; + border: 0; + border-top: 1px solid #eeeeee; + border-bottom: 1px solid #ffffff; +} + +abbr[title] { + cursor: help; + border-bottom: 1px dotted #999999; +} + +abbr.initialism { + font-size: 90%; + text-transform: uppercase; +} + +blockquote { + padding: 0 0 0 15px; + margin: 0 0 20px; + border-left: 5px solid #eeeeee; +} + +blockquote p { + margin-bottom: 0; + font-size: 16px; + font-weight: 300; + line-height: 25px; +} + +blockquote small { + display: block; + line-height: 20px; + color: #999999; +} + +blockquote small:before { + content: '\2014 \00A0'; +} + +blockquote.pull-right { + float: right; + padding-right: 15px; + padding-left: 0; + border-right: 5px solid #eeeeee; + border-left: 0; +} + +blockquote.pull-right p, +blockquote.pull-right small { + text-align: right; +} + +blockquote.pull-right small:before { + content: ''; +} + +blockquote.pull-right small:after { + content: '\00A0 \2014'; +} + +q:before, +q:after, +blockquote:before, +blockquote:after { + content: ""; +} + +address { + display: block; + margin-bottom: 20px; + font-style: normal; + line-height: 20px; +} + +code, +pre { + padding: 0 3px 2px; + font-family: Monaco, Menlo, Consolas, "Courier New", monospace; + font-size: 12px; + color: #333333; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +code { + padding: 2px 4px; + color: #d14; + background-color: #f7f7f9; + border: 1px solid #e1e1e8; +} + +pre { + display: block; + padding: 9.5px; + margin: 0 0 10px; + font-size: 13px; + line-height: 20px; + word-break: break-all; + word-wrap: break-word; + white-space: pre; + white-space: pre-wrap; + background-color: #f5f5f5; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.15); + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +pre.prettyprint { + margin-bottom: 20px; +} + +pre code { + padding: 0; + color: inherit; + background-color: transparent; + border: 0; +} + +.pre-scrollable { + max-height: 340px; + overflow-y: scroll; +} + +form { + margin: 0 0 20px; +} + +fieldset { + padding: 0; + margin: 0; + border: 0; +} + +legend { + display: block; + width: 100%; + padding: 0; + margin-bottom: 20px; + font-size: 21px; + line-height: 40px; + color: #333333; + border: 0; + border-bottom: 1px solid #e5e5e5; +} + +legend small { + font-size: 15px; + color: #999999; +} + +label, +input, +button, +select, +textarea { + font-size: 14px; + font-weight: normal; + line-height: 20px; +} + +input, +button, +select, +textarea { + font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; +} + +label { + display: block; + margin-bottom: 5px; +} + +select, +textarea, +input[type="text"], +input[type="password"], +input[type="datetime"], +input[type="datetime-local"], +input[type="date"], +input[type="month"], +input[type="time"], +input[type="week"], +input[type="number"], +input[type="email"], +input[type="url"], +input[type="search"], +input[type="tel"], +input[type="color"], +.uneditable-input { + display: inline-block; + height: 20px; + padding: 4px 6px; + margin-bottom: 9px; + font-size: 14px; + line-height: 20px; + color: #555555; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +input, +textarea, +.uneditable-input { + width: 206px; +} + +textarea { + height: auto; +} + +textarea, +input[type="text"], +input[type="password"], +input[type="datetime"], +input[type="datetime-local"], +input[type="date"], +input[type="month"], +input[type="time"], +input[type="week"], +input[type="number"], +input[type="email"], +input[type="url"], +input[type="search"], +input[type="tel"], +input[type="color"], +.uneditable-input { + background-color: #ffffff; + border: 1px solid #cccccc; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -webkit-transition: border linear 0.2s, box-shadow linear 0.2s; + -moz-transition: border linear 0.2s, box-shadow linear 0.2s; + -o-transition: border linear 0.2s, box-shadow linear 0.2s; + transition: border linear 0.2s, box-shadow linear 0.2s; +} + +textarea:focus, +input[type="text"]:focus, +input[type="password"]:focus, +input[type="datetime"]:focus, +input[type="datetime-local"]:focus, +input[type="date"]:focus, +input[type="month"]:focus, +input[type="time"]:focus, +input[type="week"]:focus, +input[type="number"]:focus, +input[type="email"]:focus, +input[type="url"]:focus, +input[type="search"]:focus, +input[type="tel"]:focus, +input[type="color"]:focus, +.uneditable-input:focus { + border-color: rgba(82, 168, 236, 0.8); + outline: 0; + outline: thin dotted \9; + /* IE6-9 */ + + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); +} + +input[type="radio"], +input[type="checkbox"] { + margin: 4px 0 0; + margin-top: 1px \9; + *margin-top: 0; + line-height: normal; + cursor: pointer; +} + +input[type="file"], +input[type="image"], +input[type="submit"], +input[type="reset"], +input[type="button"], +input[type="radio"], +input[type="checkbox"] { + width: auto; +} + +select, +input[type="file"] { + height: 30px; + /* In IE7, the height of the select element cannot be changed by height, only font-size */ + + *margin-top: 4px; + /* For IE7, add top margin to align select with labels */ + + line-height: 30px; +} + +select { + width: 220px; + background-color: #ffffff; + border: 1px solid #cccccc; +} + +select[multiple], +select[size] { + height: auto; +} + +select:focus, +input[type="file"]:focus, +input[type="radio"]:focus, +input[type="checkbox"]:focus { + outline: thin dotted #333; + outline: 5px auto -webkit-focus-ring-color; + outline-offset: -2px; +} + +.uneditable-input, +.uneditable-textarea { + color: #999999; + cursor: not-allowed; + background-color: #fcfcfc; + border-color: #cccccc; + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); +} + +.uneditable-input { + overflow: hidden; + white-space: nowrap; +} + +.uneditable-textarea { + width: auto; + height: auto; +} + +input:-moz-placeholder, +textarea:-moz-placeholder { + color: #999999; +} + +input:-ms-input-placeholder, +textarea:-ms-input-placeholder { + color: #999999; +} + +input::-webkit-input-placeholder, +textarea::-webkit-input-placeholder { + color: #999999; +} + +.radio, +.checkbox { + min-height: 18px; + padding-left: 18px; +} + +.radio input[type="radio"], +.checkbox input[type="checkbox"] { + float: left; + margin-left: -18px; +} + +.controls > .radio:first-child, +.controls > .checkbox:first-child { + padding-top: 5px; +} + +.radio.inline, +.checkbox.inline { + display: inline-block; + padding-top: 5px; + margin-bottom: 0; + vertical-align: middle; +} + +.radio.inline + .radio.inline, +.checkbox.inline + .checkbox.inline { + margin-left: 10px; +} + +.input-mini { + width: 60px; +} + +.input-small { + width: 90px; +} + +.input-medium { + width: 150px; +} + +.input-large { + width: 210px; +} + +.input-xlarge { + width: 270px; +} + +.input-xxlarge { + width: 530px; +} + +input[class*="span"], +select[class*="span"], +textarea[class*="span"], +.uneditable-input[class*="span"], +.row-fluid input[class*="span"], +.row-fluid select[class*="span"], +.row-fluid textarea[class*="span"], +.row-fluid .uneditable-input[class*="span"] { + float: none; + margin-left: 0; +} + +.input-append input[class*="span"], +.input-append .uneditable-input[class*="span"], +.input-prepend input[class*="span"], +.input-prepend .uneditable-input[class*="span"], +.row-fluid input[class*="span"], +.row-fluid select[class*="span"], +.row-fluid textarea[class*="span"], +.row-fluid .uneditable-input[class*="span"], +.row-fluid .input-prepend [class*="span"], +.row-fluid .input-append [class*="span"] { + display: inline-block; +} + +input, +textarea, +.uneditable-input { + margin-left: 0; +} + +.controls-row [class*="span"] + [class*="span"] { + margin-left: 20px; +} + +input.span12, +textarea.span12, +.uneditable-input.span12 { + width: 926px; +} + +input.span11, +textarea.span11, +.uneditable-input.span11 { + width: 846px; +} + +input.span10, +textarea.span10, +.uneditable-input.span10 { + width: 766px; +} + +input.span9, +textarea.span9, +.uneditable-input.span9 { + width: 686px; +} + +input.span8, +textarea.span8, +.uneditable-input.span8 { + width: 606px; +} + +input.span7, +textarea.span7, +.uneditable-input.span7 { + width: 526px; +} + +input.span6, +textarea.span6, +.uneditable-input.span6 { + width: 446px; +} + +input.span5, +textarea.span5, +.uneditable-input.span5 { + width: 366px; +} + +input.span4, +textarea.span4, +.uneditable-input.span4 { + width: 286px; +} + +input.span3, +textarea.span3, +.uneditable-input.span3 { + width: 206px; +} + +input.span2, +textarea.span2, +.uneditable-input.span2 { + width: 126px; +} + +input.span1, +textarea.span1, +.uneditable-input.span1 { + width: 46px; +} + +.controls-row { + *zoom: 1; +} + +.controls-row:before, +.controls-row:after { + display: table; + line-height: 0; + content: ""; +} + +.controls-row:after { + clear: both; +} + +.controls-row [class*="span"] { + float: left; +} + +input[disabled], +select[disabled], +textarea[disabled], +input[readonly], +select[readonly], +textarea[readonly] { + cursor: not-allowed; + background-color: #eeeeee; +} + +input[type="radio"][disabled], +input[type="checkbox"][disabled], +input[type="radio"][readonly], +input[type="checkbox"][readonly] { + background-color: transparent; +} + +.control-group.warning > label, +.control-group.warning .help-block, +.control-group.warning .help-inline { + color: #c09853; +} + +.control-group.warning .checkbox, +.control-group.warning .radio, +.control-group.warning input, +.control-group.warning select, +.control-group.warning textarea { + color: #c09853; +} + +.control-group.warning input, +.control-group.warning select, +.control-group.warning textarea { + border-color: #c09853; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.warning input:focus, +.control-group.warning select:focus, +.control-group.warning textarea:focus { + border-color: #a47e3c; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; +} + +.control-group.warning .input-prepend .add-on, +.control-group.warning .input-append .add-on { + color: #c09853; + background-color: #fcf8e3; + border-color: #c09853; +} + +.control-group.error > label, +.control-group.error .help-block, +.control-group.error .help-inline { + color: #b94a48; +} + +.control-group.error .checkbox, +.control-group.error .radio, +.control-group.error input, +.control-group.error select, +.control-group.error textarea { + color: #b94a48; +} + +.control-group.error input, +.control-group.error select, +.control-group.error textarea { + border-color: #b94a48; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.error input:focus, +.control-group.error select:focus, +.control-group.error textarea:focus { + border-color: #953b39; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; +} + +.control-group.error .input-prepend .add-on, +.control-group.error .input-append .add-on { + color: #b94a48; + background-color: #f2dede; + border-color: #b94a48; +} + +.control-group.success > label, +.control-group.success .help-block, +.control-group.success .help-inline { + color: #468847; +} + +.control-group.success .checkbox, +.control-group.success .radio, +.control-group.success input, +.control-group.success select, +.control-group.success textarea { + color: #468847; +} + +.control-group.success input, +.control-group.success select, +.control-group.success textarea { + border-color: #468847; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.success input:focus, +.control-group.success select:focus, +.control-group.success textarea:focus { + border-color: #356635; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; +} + +.control-group.success .input-prepend .add-on, +.control-group.success .input-append .add-on { + color: #468847; + background-color: #dff0d8; + border-color: #468847; +} + +.control-group.info > label, +.control-group.info .help-block, +.control-group.info .help-inline { + color: #3a87ad; +} + +.control-group.info .checkbox, +.control-group.info .radio, +.control-group.info input, +.control-group.info select, +.control-group.info textarea { + color: #3a87ad; +} + +.control-group.info input, +.control-group.info select, +.control-group.info textarea { + border-color: #3a87ad; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.info input:focus, +.control-group.info select:focus, +.control-group.info textarea:focus { + border-color: #2d6987; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; +} + +.control-group.info .input-prepend .add-on, +.control-group.info .input-append .add-on { + color: #3a87ad; + background-color: #d9edf7; + border-color: #3a87ad; +} + +input:focus:required:invalid, +textarea:focus:required:invalid, +select:focus:required:invalid { + color: #b94a48; + border-color: #ee5f5b; +} + +input:focus:required:invalid:focus, +textarea:focus:required:invalid:focus, +select:focus:required:invalid:focus { + border-color: #e9322d; + -webkit-box-shadow: 0 0 6px #f8b9b7; + -moz-box-shadow: 0 0 6px #f8b9b7; + box-shadow: 0 0 6px #f8b9b7; +} + +.form-actions { + padding: 19px 20px 20px; + margin-top: 20px; + margin-bottom: 20px; + background-color: #f5f5f5; + border-top: 1px solid #e5e5e5; + *zoom: 1; +} + +.form-actions:before, +.form-actions:after { + display: table; + line-height: 0; + content: ""; +} + +.form-actions:after { + clear: both; +} + +.help-block, +.help-inline { + color: #595959; +} + +.help-block { + display: block; + margin-bottom: 10px; +} + +.help-inline { + display: inline-block; + *display: inline; + padding-left: 5px; + vertical-align: middle; + *zoom: 1; +} + +.input-append, +.input-prepend { + margin-bottom: 5px; + font-size: 0; + white-space: nowrap; +} + +.input-append input, +.input-prepend input, +.input-append select, +.input-prepend select, +.input-append .uneditable-input, +.input-prepend .uneditable-input { + position: relative; + margin-bottom: 0; + *margin-left: 0; + font-size: 14px; + vertical-align: top; + -webkit-border-radius: 0 3px 3px 0; + -moz-border-radius: 0 3px 3px 0; + border-radius: 0 3px 3px 0; +} + +.input-append input:focus, +.input-prepend input:focus, +.input-append select:focus, +.input-prepend select:focus, +.input-append .uneditable-input:focus, +.input-prepend .uneditable-input:focus { + z-index: 2; +} + +.input-append .add-on, +.input-prepend .add-on { + display: inline-block; + width: auto; + height: 20px; + min-width: 16px; + padding: 4px 5px; + font-size: 14px; + font-weight: normal; + line-height: 20px; + text-align: center; + text-shadow: 0 1px 0 #ffffff; + background-color: #eeeeee; + border: 1px solid #ccc; +} + +.input-append .add-on, +.input-prepend .add-on, +.input-append .btn, +.input-prepend .btn { + vertical-align: top; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.input-append .active, +.input-prepend .active { + background-color: #a9dba9; + border-color: #46a546; +} + +.input-prepend .add-on, +.input-prepend .btn { + margin-right: -1px; +} + +.input-prepend .add-on:first-child, +.input-prepend .btn:first-child { + -webkit-border-radius: 3px 0 0 3px; + -moz-border-radius: 3px 0 0 3px; + border-radius: 3px 0 0 3px; +} + +.input-append input, +.input-append select, +.input-append .uneditable-input { + -webkit-border-radius: 3px 0 0 3px; + -moz-border-radius: 3px 0 0 3px; + border-radius: 3px 0 0 3px; +} + +.input-append .add-on, +.input-append .btn { + margin-left: -1px; +} + +.input-append .add-on:last-child, +.input-append .btn:last-child { + -webkit-border-radius: 0 3px 3px 0; + -moz-border-radius: 0 3px 3px 0; + border-radius: 0 3px 3px 0; +} + +.input-prepend.input-append input, +.input-prepend.input-append select, +.input-prepend.input-append .uneditable-input { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.input-prepend.input-append .add-on:first-child, +.input-prepend.input-append .btn:first-child { + margin-right: -1px; + -webkit-border-radius: 3px 0 0 3px; + -moz-border-radius: 3px 0 0 3px; + border-radius: 3px 0 0 3px; +} + +.input-prepend.input-append .add-on:last-child, +.input-prepend.input-append .btn:last-child { + margin-left: -1px; + -webkit-border-radius: 0 3px 3px 0; + -moz-border-radius: 0 3px 3px 0; + border-radius: 0 3px 3px 0; +} + +input.search-query { + padding-right: 14px; + padding-right: 4px \9; + padding-left: 14px; + padding-left: 4px \9; + /* IE7-8 doesn't have border-radius, so don't indent the padding */ + + margin-bottom: 0; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +/* Allow for input prepend/append in search forms */ + +.form-search .input-append .search-query, +.form-search .input-prepend .search-query { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.form-search .input-append .search-query { + -webkit-border-radius: 14px 0 0 14px; + -moz-border-radius: 14px 0 0 14px; + border-radius: 14px 0 0 14px; +} + +.form-search .input-append .btn { + -webkit-border-radius: 0 14px 14px 0; + -moz-border-radius: 0 14px 14px 0; + border-radius: 0 14px 14px 0; +} + +.form-search .input-prepend .search-query { + -webkit-border-radius: 0 14px 14px 0; + -moz-border-radius: 0 14px 14px 0; + border-radius: 0 14px 14px 0; +} + +.form-search .input-prepend .btn { + -webkit-border-radius: 14px 0 0 14px; + -moz-border-radius: 14px 0 0 14px; + border-radius: 14px 0 0 14px; +} + +.form-search input, +.form-inline input, +.form-horizontal input, +.form-search textarea, +.form-inline textarea, +.form-horizontal textarea, +.form-search select, +.form-inline select, +.form-horizontal select, +.form-search .help-inline, +.form-inline .help-inline, +.form-horizontal .help-inline, +.form-search .uneditable-input, +.form-inline .uneditable-input, +.form-horizontal .uneditable-input, +.form-search .input-prepend, +.form-inline .input-prepend, +.form-horizontal .input-prepend, +.form-search .input-append, +.form-inline .input-append, +.form-horizontal .input-append { + display: inline-block; + *display: inline; + margin-bottom: 0; + vertical-align: middle; + *zoom: 1; +} + +.form-search .hide, +.form-inline .hide, +.form-horizontal .hide { + display: none; +} + +.form-search label, +.form-inline label, +.form-search .btn-group, +.form-inline .btn-group { + display: inline-block; +} + +.form-search .input-append, +.form-inline .input-append, +.form-search .input-prepend, +.form-inline .input-prepend { + margin-bottom: 0; +} + +.form-search .radio, +.form-search .checkbox, +.form-inline .radio, +.form-inline .checkbox { + padding-left: 0; + margin-bottom: 0; + vertical-align: middle; +} + +.form-search .radio input[type="radio"], +.form-search .checkbox input[type="checkbox"], +.form-inline .radio input[type="radio"], +.form-inline .checkbox input[type="checkbox"] { + float: left; + margin-right: 3px; + margin-left: 0; +} + +.control-group { + margin-bottom: 10px; +} + +legend + .control-group { + margin-top: 20px; + -webkit-margin-top-collapse: separate; +} + +.form-horizontal .control-group { + margin-bottom: 20px; + *zoom: 1; +} + +.form-horizontal .control-group:before, +.form-horizontal .control-group:after { + display: table; + line-height: 0; + content: ""; +} + +.form-horizontal .control-group:after { + clear: both; +} + +.form-horizontal .control-label { + float: left; + width: 160px; + padding-top: 5px; + text-align: right; +} + +.form-horizontal .controls { + *display: inline-block; + *padding-left: 20px; + margin-left: 180px; + *margin-left: 0; +} + +.form-horizontal .controls:first-child { + *padding-left: 180px; +} + +.form-horizontal .help-block { + margin-bottom: 0; +} + +.form-horizontal input + .help-block, +.form-horizontal select + .help-block, +.form-horizontal textarea + .help-block { + margin-top: 10px; +} + +.form-horizontal .form-actions { + padding-left: 180px; +} + +table { + max-width: 100%; + background-color: transparent; + border-collapse: collapse; + border-spacing: 0; +} + +.table { + width: 100%; + margin-bottom: 20px; +} + +.table th, +.table td { + padding: 8px; + line-height: 20px; + text-align: left; + vertical-align: top; + border-top: 1px solid #dddddd; +} + +.table th { + font-weight: bold; +} + +.table thead th { + vertical-align: bottom; +} + +.table caption + thead tr:first-child th, +.table caption + thead tr:first-child td, +.table colgroup + thead tr:first-child th, +.table colgroup + thead tr:first-child td, +.table thead:first-child tr:first-child th, +.table thead:first-child tr:first-child td { + border-top: 0; +} + +.table tbody + tbody { + border-top: 2px solid #dddddd; +} + +.table-condensed th, +.table-condensed td { + padding: 4px 5px; +} + +.table-bordered { + border: 1px solid #dddddd; + border-collapse: separate; + *border-collapse: collapse; + border-left: 0; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.table-bordered th, +.table-bordered td { + border-left: 1px solid #dddddd; +} + +.table-bordered caption + thead tr:first-child th, +.table-bordered caption + tbody tr:first-child th, +.table-bordered caption + tbody tr:first-child td, +.table-bordered colgroup + thead tr:first-child th, +.table-bordered colgroup + tbody tr:first-child th, +.table-bordered colgroup + tbody tr:first-child td, +.table-bordered thead:first-child tr:first-child th, +.table-bordered tbody:first-child tr:first-child th, +.table-bordered tbody:first-child tr:first-child td { + border-top: 0; +} + +.table-bordered thead:first-child tr:first-child th:first-child, +.table-bordered tbody:first-child tr:first-child td:first-child { + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topleft: 4px; +} + +.table-bordered thead:first-child tr:first-child th:last-child, +.table-bordered tbody:first-child tr:first-child td:last-child { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -moz-border-radius-topright: 4px; +} + +.table-bordered thead:last-child tr:last-child th:first-child, +.table-bordered tbody:last-child tr:last-child td:first-child, +.table-bordered tfoot:last-child tr:last-child td:first-child { + -webkit-border-radius: 0 0 0 4px; + -moz-border-radius: 0 0 0 4px; + border-radius: 0 0 0 4px; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; +} + +.table-bordered thead:last-child tr:last-child th:last-child, +.table-bordered tbody:last-child tr:last-child td:last-child, +.table-bordered tfoot:last-child tr:last-child td:last-child { + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-bottomright: 4px; +} + +.table-bordered caption + thead tr:first-child th:first-child, +.table-bordered caption + tbody tr:first-child td:first-child, +.table-bordered colgroup + thead tr:first-child th:first-child, +.table-bordered colgroup + tbody tr:first-child td:first-child { + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topleft: 4px; +} + +.table-bordered caption + thead tr:first-child th:last-child, +.table-bordered caption + tbody tr:first-child td:last-child, +.table-bordered colgroup + thead tr:first-child th:last-child, +.table-bordered colgroup + tbody tr:first-child td:last-child { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -moz-border-radius-topleft: 4px; +} + +.table-striped tbody tr:nth-child(odd) td, +.table-striped tbody tr:nth-child(odd) th { + background-color: #f9f9f9; +} + +.table-hover tbody tr:hover td, +.table-hover tbody tr:hover th { + background-color: #f5f5f5; +} + +table [class*=span], +.row-fluid table [class*=span] { + display: table-cell; + float: none; + margin-left: 0; +} + +.table .span1 { + float: none; + width: 44px; + margin-left: 0; +} + +.table .span2 { + float: none; + width: 124px; + margin-left: 0; +} + +.table .span3 { + float: none; + width: 204px; + margin-left: 0; +} + +.table .span4 { + float: none; + width: 284px; + margin-left: 0; +} + +.table .span5 { + float: none; + width: 364px; + margin-left: 0; +} + +.table .span6 { + float: none; + width: 444px; + margin-left: 0; +} + +.table .span7 { + float: none; + width: 524px; + margin-left: 0; +} + +.table .span8 { + float: none; + width: 604px; + margin-left: 0; +} + +.table .span9 { + float: none; + width: 684px; + margin-left: 0; +} + +.table .span10 { + float: none; + width: 764px; + margin-left: 0; +} + +.table .span11 { + float: none; + width: 844px; + margin-left: 0; +} + +.table .span12 { + float: none; + width: 924px; + margin-left: 0; +} + +.table .span13 { + float: none; + width: 1004px; + margin-left: 0; +} + +.table .span14 { + float: none; + width: 1084px; + margin-left: 0; +} + +.table .span15 { + float: none; + width: 1164px; + margin-left: 0; +} + +.table .span16 { + float: none; + width: 1244px; + margin-left: 0; +} + +.table .span17 { + float: none; + width: 1324px; + margin-left: 0; +} + +.table .span18 { + float: none; + width: 1404px; + margin-left: 0; +} + +.table .span19 { + float: none; + width: 1484px; + margin-left: 0; +} + +.table .span20 { + float: none; + width: 1564px; + margin-left: 0; +} + +.table .span21 { + float: none; + width: 1644px; + margin-left: 0; +} + +.table .span22 { + float: none; + width: 1724px; + margin-left: 0; +} + +.table .span23 { + float: none; + width: 1804px; + margin-left: 0; +} + +.table .span24 { + float: none; + width: 1884px; + margin-left: 0; +} + +.table tbody tr.success td { + background-color: #dff0d8; +} + +.table tbody tr.error td { + background-color: #f2dede; +} + +.table tbody tr.warning td { + background-color: #fcf8e3; +} + +.table tbody tr.info td { + background-color: #d9edf7; +} + +.table-hover tbody tr.success:hover td { + background-color: #d0e9c6; +} + +.table-hover tbody tr.error:hover td { + background-color: #ebcccc; +} + +.table-hover tbody tr.warning:hover td { + background-color: #faf2cc; +} + +.table-hover tbody tr.info:hover td { + background-color: #c4e3f3; +} + +[class^="icon-"], +[class*=" icon-"] { + display: inline-block; + width: 14px; + height: 14px; + margin-top: 1px; + *margin-right: .3em; + line-height: 14px; + vertical-align: text-top; + background-image: url("../img/glyphicons-halflings.png"); + background-position: 14px 14px; + background-repeat: no-repeat; +} + +/* White icons with optional class, or on hover/active states of certain elements */ + +.icon-white, +.nav-tabs > .active > a > [class^="icon-"], +.nav-tabs > .active > a > [class*=" icon-"], +.nav-pills > .active > a > [class^="icon-"], +.nav-pills > .active > a > [class*=" icon-"], +.nav-list > .active > a > [class^="icon-"], +.nav-list > .active > a > [class*=" icon-"], +.navbar-inverse .nav > .active > a > [class^="icon-"], +.navbar-inverse .nav > .active > a > [class*=" icon-"], +.dropdown-menu > li > a:hover > [class^="icon-"], +.dropdown-menu > li > a:hover > [class*=" icon-"], +.dropdown-menu > .active > a > [class^="icon-"], +.dropdown-menu > .active > a > [class*=" icon-"] { + background-image: url("../img/glyphicons-halflings-white.png"); +} + +.icon-glass { + background-position: 0 0; +} + +.icon-music { + background-position: -24px 0; +} + +.icon-search { + background-position: -48px 0; +} + +.icon-envelope { + background-position: -72px 0; +} + +.icon-heart { + background-position: -96px 0; +} + +.icon-star { + background-position: -120px 0; +} + +.icon-star-empty { + background-position: -144px 0; +} + +.icon-user { + background-position: -168px 0; +} + +.icon-film { + background-position: -192px 0; +} + +.icon-th-large { + background-position: -216px 0; +} + +.icon-th { + background-position: -240px 0; +} + +.icon-th-list { + background-position: -264px 0; +} + +.icon-ok { + background-position: -288px 0; +} + +.icon-remove { + background-position: -312px 0; +} + +.icon-zoom-in { + background-position: -336px 0; +} + +.icon-zoom-out { + background-position: -360px 0; +} + +.icon-off { + background-position: -384px 0; +} + +.icon-signal { + background-position: -408px 0; +} + +.icon-cog { + background-position: -432px 0; +} + +.icon-trash { + background-position: -456px 0; +} + +.icon-home { + background-position: 0 -24px; +} + +.icon-file { + background-position: -24px -24px; +} + +.icon-time { + background-position: -48px -24px; +} + +.icon-road { + background-position: -72px -24px; +} + +.icon-download-alt { + background-position: -96px -24px; +} + +.icon-download { + background-position: -120px -24px; +} + +.icon-upload { + background-position: -144px -24px; +} + +.icon-inbox { + background-position: -168px -24px; +} + +.icon-play-circle { + background-position: -192px -24px; +} + +.icon-repeat { + background-position: -216px -24px; +} + +.icon-refresh { + background-position: -240px -24px; +} + +.icon-list-alt { + background-position: -264px -24px; +} + +.icon-lock { + background-position: -287px -24px; +} + +.icon-flag { + background-position: -312px -24px; +} + +.icon-headphones { + background-position: -336px -24px; +} + +.icon-volume-off { + background-position: -360px -24px; +} + +.icon-volume-down { + background-position: -384px -24px; +} + +.icon-volume-up { + background-position: -408px -24px; +} + +.icon-qrcode { + background-position: -432px -24px; +} + +.icon-barcode { + background-position: -456px -24px; +} + +.icon-tag { + background-position: 0 -48px; +} + +.icon-tags { + background-position: -25px -48px; +} + +.icon-book { + background-position: -48px -48px; +} + +.icon-bookmark { + background-position: -72px -48px; +} + +.icon-print { + background-position: -96px -48px; +} + +.icon-camera { + background-position: -120px -48px; +} + +.icon-font { + background-position: -144px -48px; +} + +.icon-bold { + background-position: -167px -48px; +} + +.icon-italic { + background-position: -192px -48px; +} + +.icon-text-height { + background-position: -216px -48px; +} + +.icon-text-width { + background-position: -240px -48px; +} + +.icon-align-left { + background-position: -264px -48px; +} + +.icon-align-center { + background-position: -288px -48px; +} + +.icon-align-right { + background-position: -312px -48px; +} + +.icon-align-justify { + background-position: -336px -48px; +} + +.icon-list { + background-position: -360px -48px; +} + +.icon-indent-left { + background-position: -384px -48px; +} + +.icon-indent-right { + background-position: -408px -48px; +} + +.icon-facetime-video { + background-position: -432px -48px; +} + +.icon-picture { + background-position: -456px -48px; +} + +.icon-pencil { + background-position: 0 -72px; +} + +.icon-map-marker { + background-position: -24px -72px; +} + +.icon-adjust { + background-position: -48px -72px; +} + +.icon-tint { + background-position: -72px -72px; +} + +.icon-edit { + background-position: -96px -72px; +} + +.icon-share { + background-position: -120px -72px; +} + +.icon-check { + background-position: -144px -72px; +} + +.icon-move { + background-position: -168px -72px; +} + +.icon-step-backward { + background-position: -192px -72px; +} + +.icon-fast-backward { + background-position: -216px -72px; +} + +.icon-backward { + background-position: -240px -72px; +} + +.icon-play { + background-position: -264px -72px; +} + +.icon-pause { + background-position: -288px -72px; +} + +.icon-stop { + background-position: -312px -72px; +} + +.icon-forward { + background-position: -336px -72px; +} + +.icon-fast-forward { + background-position: -360px -72px; +} + +.icon-step-forward { + background-position: -384px -72px; +} + +.icon-eject { + background-position: -408px -72px; +} + +.icon-chevron-left { + background-position: -432px -72px; +} + +.icon-chevron-right { + background-position: -456px -72px; +} + +.icon-plus-sign { + background-position: 0 -96px; +} + +.icon-minus-sign { + background-position: -24px -96px; +} + +.icon-remove-sign { + background-position: -48px -96px; +} + +.icon-ok-sign { + background-position: -72px -96px; +} + +.icon-question-sign { + background-position: -96px -96px; +} + +.icon-info-sign { + background-position: -120px -96px; +} + +.icon-screenshot { + background-position: -144px -96px; +} + +.icon-remove-circle { + background-position: -168px -96px; +} + +.icon-ok-circle { + background-position: -192px -96px; +} + +.icon-ban-circle { + background-position: -216px -96px; +} + +.icon-arrow-left { + background-position: -240px -96px; +} + +.icon-arrow-right { + background-position: -264px -96px; +} + +.icon-arrow-up { + background-position: -289px -96px; +} + +.icon-arrow-down { + background-position: -312px -96px; +} + +.icon-share-alt { + background-position: -336px -96px; +} + +.icon-resize-full { + background-position: -360px -96px; +} + +.icon-resize-small { + background-position: -384px -96px; +} + +.icon-plus { + background-position: -408px -96px; +} + +.icon-minus { + background-position: -433px -96px; +} + +.icon-asterisk { + background-position: -456px -96px; +} + +.icon-exclamation-sign { + background-position: 0 -120px; +} + +.icon-gift { + background-position: -24px -120px; +} + +.icon-leaf { + background-position: -48px -120px; +} + +.icon-fire { + background-position: -72px -120px; +} + +.icon-eye-open { + background-position: -96px -120px; +} + +.icon-eye-close { + background-position: -120px -120px; +} + +.icon-warning-sign { + background-position: -144px -120px; +} + +.icon-plane { + background-position: -168px -120px; +} + +.icon-calendar { + background-position: -192px -120px; +} + +.icon-random { + width: 16px; + background-position: -216px -120px; +} + +.icon-comment { + background-position: -240px -120px; +} + +.icon-magnet { + background-position: -264px -120px; +} + +.icon-chevron-up { + background-position: -288px -120px; +} + +.icon-chevron-down { + background-position: -313px -119px; +} + +.icon-retweet { + background-position: -336px -120px; +} + +.icon-shopping-cart { + background-position: -360px -120px; +} + +.icon-folder-close { + background-position: -384px -120px; +} + +.icon-folder-open { + width: 16px; + background-position: -408px -120px; +} + +.icon-resize-vertical { + background-position: -432px -119px; +} + +.icon-resize-horizontal { + background-position: -456px -118px; +} + +.icon-hdd { + background-position: 0 -144px; +} + +.icon-bullhorn { + background-position: -24px -144px; +} + +.icon-bell { + background-position: -48px -144px; +} + +.icon-certificate { + background-position: -72px -144px; +} + +.icon-thumbs-up { + background-position: -96px -144px; +} + +.icon-thumbs-down { + background-position: -120px -144px; +} + +.icon-hand-right { + background-position: -144px -144px; +} + +.icon-hand-left { + background-position: -168px -144px; +} + +.icon-hand-up { + background-position: -192px -144px; +} + +.icon-hand-down { + background-position: -216px -144px; +} + +.icon-circle-arrow-right { + background-position: -240px -144px; +} + +.icon-circle-arrow-left { + background-position: -264px -144px; +} + +.icon-circle-arrow-up { + background-position: -288px -144px; +} + +.icon-circle-arrow-down { + background-position: -312px -144px; +} + +.icon-globe { + background-position: -336px -144px; +} + +.icon-wrench { + background-position: -360px -144px; +} + +.icon-tasks { + background-position: -384px -144px; +} + +.icon-filter { + background-position: -408px -144px; +} + +.icon-briefcase { + background-position: -432px -144px; +} + +.icon-fullscreen { + background-position: -456px -144px; +} + +.dropup, +.dropdown { + position: relative; +} + +.dropdown-toggle { + *margin-bottom: -3px; +} + +.dropdown-toggle:active, +.open .dropdown-toggle { + outline: 0; +} + +.caret { + display: inline-block; + width: 0; + height: 0; + vertical-align: top; + border-top: 4px solid #000000; + border-right: 4px solid transparent; + border-left: 4px solid transparent; + content: ""; +} + +.dropdown .caret { + margin-top: 8px; + margin-left: 2px; +} + +.dropdown-menu { + position: absolute; + top: 100%; + left: 0; + z-index: 1000; + display: none; + float: left; + min-width: 160px; + padding: 5px 0; + margin: 2px 0 0; + list-style: none; + background-color: #ffffff; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.2); + *border-right-width: 2px; + *border-bottom-width: 2px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -moz-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -webkit-background-clip: padding-box; + -moz-background-clip: padding; + background-clip: padding-box; +} + +.dropdown-menu.pull-right { + right: 0; + left: auto; +} + +.dropdown-menu .divider { + *width: 100%; + height: 1px; + margin: 9px 1px; + *margin: -5px 0 5px; + overflow: hidden; + background-color: #e5e5e5; + border-bottom: 1px solid #ffffff; +} + +.dropdown-menu a { + display: block; + padding: 3px 20px; + clear: both; + font-weight: normal; + line-height: 20px; + color: #333333; + white-space: nowrap; +} + +.dropdown-menu li > a:hover, +.dropdown-menu li > a:focus, +.dropdown-submenu:hover > a { + color: #ffffff; + text-decoration: none; + background-color: #0088cc; + background-color: #0081c2; + background-image: -moz-linear-gradient(top, #0088cc, #0077b3); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); + background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); + background-image: -o-linear-gradient(top, #0088cc, #0077b3); + background-image: linear-gradient(to bottom, #0088cc, #0077b3); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); +} + +.dropdown-menu .active > a, +.dropdown-menu .active > a:hover { + color: #ffffff; + text-decoration: none; + background-color: #0088cc; + background-color: #0081c2; + background-image: linear-gradient(to bottom, #0088cc, #0077b3); + background-image: -moz-linear-gradient(top, #0088cc, #0077b3); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); + background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); + background-image: -o-linear-gradient(top, #0088cc, #0077b3); + background-repeat: repeat-x; + outline: 0; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); +} + +.dropdown-menu .disabled > a, +.dropdown-menu .disabled > a:hover { + color: #999999; +} + +.dropdown-menu .disabled > a:hover { + text-decoration: none; + cursor: default; + background-color: transparent; +} + +.open { + *z-index: 1000; +} + +.open > .dropdown-menu { + display: block; +} + +.pull-right > .dropdown-menu { + right: 0; + left: auto; +} + +.dropup .caret, +.navbar-fixed-bottom .dropdown .caret { + border-top: 0; + border-bottom: 4px solid #000000; + content: ""; +} + +.dropup .dropdown-menu, +.navbar-fixed-bottom .dropdown .dropdown-menu { + top: auto; + bottom: 100%; + margin-bottom: 1px; +} + +.dropdown-submenu { + position: relative; +} + +.dropdown-submenu > .dropdown-menu { + top: 0; + left: 100%; + margin-top: -6px; + margin-left: -1px; + -webkit-border-radius: 0 6px 6px 6px; + -moz-border-radius: 0 6px 6px 6px; + border-radius: 0 6px 6px 6px; +} + +.dropdown-submenu:hover > .dropdown-menu { + display: block; +} + +.dropdown-submenu > a:after { + display: block; + float: right; + width: 0; + height: 0; + margin-top: 5px; + margin-right: -10px; + border-color: transparent; + border-left-color: #cccccc; + border-style: solid; + border-width: 5px 0 5px 5px; + content: " "; +} + +.dropdown-submenu:hover > a:after { + border-left-color: #ffffff; +} + +.dropdown .dropdown-menu .nav-header { + padding-right: 20px; + padding-left: 20px; +} + +.typeahead { + margin-top: 2px; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.well { + min-height: 20px; + padding: 19px; + margin-bottom: 20px; + background-color: #f5f5f5; + border: 1px solid #e3e3e3; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); +} + +.well blockquote { + border-color: #ddd; + border-color: rgba(0, 0, 0, 0.15); +} + +.well-large { + padding: 24px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.well-small { + padding: 9px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.fade { + opacity: 0; + -webkit-transition: opacity 0.15s linear; + -moz-transition: opacity 0.15s linear; + -o-transition: opacity 0.15s linear; + transition: opacity 0.15s linear; +} + +.fade.in { + opacity: 1; +} + +.collapse { + position: relative; + height: 0; + overflow: hidden; + -webkit-transition: height 0.35s ease; + -moz-transition: height 0.35s ease; + -o-transition: height 0.35s ease; + transition: height 0.35s ease; +} + +.collapse.in { + height: auto; +} + +.close { + float: right; + font-size: 20px; + font-weight: bold; + line-height: 20px; + color: #000000; + text-shadow: 0 1px 0 #ffffff; + opacity: 0.2; + filter: alpha(opacity=20); +} + +.close:hover { + color: #000000; + text-decoration: none; + cursor: pointer; + opacity: 0.4; + filter: alpha(opacity=40); +} + +button.close { + padding: 0; + cursor: pointer; + background: transparent; + border: 0; + -webkit-appearance: none; +} + +.btn { + display: inline-block; + *display: inline; + padding: 4px 14px; + margin-bottom: 0; + *margin-left: .3em; + font-size: 14px; + line-height: 20px; + *line-height: 20px; + color: #333333; + text-align: center; + text-shadow: 0 1px 1px rgba(255, 255, 255, 0.75); + vertical-align: middle; + cursor: pointer; + background-color: #f5f5f5; + *background-color: #e6e6e6; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#e6e6e6)); + background-image: -webkit-linear-gradient(top, #ffffff, #e6e6e6); + background-image: -o-linear-gradient(top, #ffffff, #e6e6e6); + background-image: linear-gradient(to bottom, #ffffff, #e6e6e6); + background-image: -moz-linear-gradient(top, #ffffff, #e6e6e6); + background-repeat: repeat-x; + border: 1px solid #bbbbbb; + *border: 0; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + border-color: #e6e6e6 #e6e6e6 #bfbfbf; + border-bottom-color: #a2a2a2; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); + *zoom: 1; + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn:hover, +.btn:active, +.btn.active, +.btn.disabled, +.btn[disabled] { + color: #333333; + background-color: #e6e6e6; + *background-color: #d9d9d9; +} + +.btn:active, +.btn.active { + background-color: #cccccc \9; +} + +.btn:first-child { + *margin-left: 0; +} + +.btn:hover { + color: #333333; + text-decoration: none; + background-color: #e6e6e6; + *background-color: #d9d9d9; + /* Buttons in IE7 don't get borders, so darken on hover */ + + background-position: 0 -15px; + -webkit-transition: background-position 0.1s linear; + -moz-transition: background-position 0.1s linear; + -o-transition: background-position 0.1s linear; + transition: background-position 0.1s linear; +} + +.btn:focus { + outline: thin dotted #333; + outline: 5px auto -webkit-focus-ring-color; + outline-offset: -2px; +} + +.btn.active, +.btn:active { + background-color: #e6e6e6; + background-color: #d9d9d9 \9; + background-image: none; + outline: 0; + -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn.disabled, +.btn[disabled] { + cursor: default; + background-color: #e6e6e6; + background-image: none; + opacity: 0.65; + filter: alpha(opacity=65); + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; +} + +.btn-large { + padding: 9px 14px; + font-size: 16px; + line-height: normal; + -webkit-border-radius: 5px; + -moz-border-radius: 5px; + border-radius: 5px; +} + +.btn-large [class^="icon-"] { + margin-top: 2px; +} + +.btn-small { + padding: 3px 9px; + font-size: 12px; + line-height: 18px; +} + +.btn-small [class^="icon-"] { + margin-top: 0; +} + +.btn-mini { + padding: 2px 6px; + font-size: 11px; + line-height: 17px; +} + +.btn-block { + display: block; + width: 100%; + padding-right: 0; + padding-left: 0; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.btn-block + .btn-block { + margin-top: 5px; +} + +input[type="submit"].btn-block, +input[type="reset"].btn-block, +input[type="button"].btn-block { + width: 100%; +} + +.btn-primary.active, +.btn-warning.active, +.btn-danger.active, +.btn-success.active, +.btn-info.active, +.btn-inverse.active { + color: rgba(255, 255, 255, 0.75); +} + +.btn { + border-color: #c5c5c5; + border-color: rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.25); +} + +.btn-primary { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #006dcc; + *background-color: #0044cc; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0044cc)); + background-image: -webkit-linear-gradient(top, #0088cc, #0044cc); + background-image: -o-linear-gradient(top, #0088cc, #0044cc); + background-image: linear-gradient(to bottom, #0088cc, #0044cc); + background-image: -moz-linear-gradient(top, #0088cc, #0044cc); + background-repeat: repeat-x; + border-color: #0044cc #0044cc #002a80; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0044cc', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-primary:hover, +.btn-primary:active, +.btn-primary.active, +.btn-primary.disabled, +.btn-primary[disabled] { + color: #ffffff; + background-color: #0044cc; + *background-color: #003bb3; +} + +.btn-primary:active, +.btn-primary.active { + background-color: #003399 \9; +} + +.btn-warning { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #faa732; + *background-color: #f89406; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); + background-image: -webkit-linear-gradient(top, #fbb450, #f89406); + background-image: -o-linear-gradient(top, #fbb450, #f89406); + background-image: linear-gradient(to bottom, #fbb450, #f89406); + background-image: -moz-linear-gradient(top, #fbb450, #f89406); + background-repeat: repeat-x; + border-color: #f89406 #f89406 #ad6704; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-warning:hover, +.btn-warning:active, +.btn-warning.active, +.btn-warning.disabled, +.btn-warning[disabled] { + color: #ffffff; + background-color: #f89406; + *background-color: #df8505; +} + +.btn-warning:active, +.btn-warning.active { + background-color: #c67605 \9; +} + +.btn-danger { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #da4f49; + *background-color: #bd362f; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ee5f5b), to(#bd362f)); + background-image: -webkit-linear-gradient(top, #ee5f5b, #bd362f); + background-image: -o-linear-gradient(top, #ee5f5b, #bd362f); + background-image: linear-gradient(to bottom, #ee5f5b, #bd362f); + background-image: -moz-linear-gradient(top, #ee5f5b, #bd362f); + background-repeat: repeat-x; + border-color: #bd362f #bd362f #802420; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffbd362f', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-danger:hover, +.btn-danger:active, +.btn-danger.active, +.btn-danger.disabled, +.btn-danger[disabled] { + color: #ffffff; + background-color: #bd362f; + *background-color: #a9302a; +} + +.btn-danger:active, +.btn-danger.active { + background-color: #942a25 \9; +} + +.btn-success { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #5bb75b; + *background-color: #51a351; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#62c462), to(#51a351)); + background-image: -webkit-linear-gradient(top, #62c462, #51a351); + background-image: -o-linear-gradient(top, #62c462, #51a351); + background-image: linear-gradient(to bottom, #62c462, #51a351); + background-image: -moz-linear-gradient(top, #62c462, #51a351); + background-repeat: repeat-x; + border-color: #51a351 #51a351 #387038; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff51a351', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-success:hover, +.btn-success:active, +.btn-success.active, +.btn-success.disabled, +.btn-success[disabled] { + color: #ffffff; + background-color: #51a351; + *background-color: #499249; +} + +.btn-success:active, +.btn-success.active { + background-color: #408140 \9; +} + +.btn-info { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #49afcd; + *background-color: #2f96b4; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#5bc0de), to(#2f96b4)); + background-image: -webkit-linear-gradient(top, #5bc0de, #2f96b4); + background-image: -o-linear-gradient(top, #5bc0de, #2f96b4); + background-image: linear-gradient(to bottom, #5bc0de, #2f96b4); + background-image: -moz-linear-gradient(top, #5bc0de, #2f96b4); + background-repeat: repeat-x; + border-color: #2f96b4 #2f96b4 #1f6377; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2f96b4', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-info:hover, +.btn-info:active, +.btn-info.active, +.btn-info.disabled, +.btn-info[disabled] { + color: #ffffff; + background-color: #2f96b4; + *background-color: #2a85a0; +} + +.btn-info:active, +.btn-info.active { + background-color: #24748c \9; +} + +.btn-inverse { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #363636; + *background-color: #222222; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#444444), to(#222222)); + background-image: -webkit-linear-gradient(top, #444444, #222222); + background-image: -o-linear-gradient(top, #444444, #222222); + background-image: linear-gradient(to bottom, #444444, #222222); + background-image: -moz-linear-gradient(top, #444444, #222222); + background-repeat: repeat-x; + border-color: #222222 #222222 #000000; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff444444', endColorstr='#ff222222', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.btn-inverse:hover, +.btn-inverse:active, +.btn-inverse.active, +.btn-inverse.disabled, +.btn-inverse[disabled] { + color: #ffffff; + background-color: #222222; + *background-color: #151515; +} + +.btn-inverse:active, +.btn-inverse.active { + background-color: #080808 \9; +} + +button.btn, +input[type="submit"].btn { + *padding-top: 3px; + *padding-bottom: 3px; +} + +button.btn::-moz-focus-inner, +input[type="submit"].btn::-moz-focus-inner { + padding: 0; + border: 0; +} + +button.btn.btn-large, +input[type="submit"].btn.btn-large { + *padding-top: 7px; + *padding-bottom: 7px; +} + +button.btn.btn-small, +input[type="submit"].btn.btn-small { + *padding-top: 3px; + *padding-bottom: 3px; +} + +button.btn.btn-mini, +input[type="submit"].btn.btn-mini { + *padding-top: 1px; + *padding-bottom: 1px; +} + +.btn-link, +.btn-link:active, +.btn-link[disabled] { + background-color: transparent; + background-image: none; + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; +} + +.btn-link { + color: #0088cc; + cursor: pointer; + border-color: transparent; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-link:hover { + color: #005580; + text-decoration: underline; + background-color: transparent; +} + +.btn-link[disabled]:hover { + color: #333333; + text-decoration: none; +} + +.btn-group { + position: relative; + *margin-left: .3em; + font-size: 0; + white-space: nowrap; + vertical-align: middle; +} + +.btn-group:first-child { + *margin-left: 0; +} + +.btn-group + .btn-group { + margin-left: 5px; +} + +.btn-toolbar { + margin-top: 10px; + margin-bottom: 10px; + font-size: 0; +} + +.btn-toolbar .btn-group { + display: inline-block; + *display: inline; + /* IE7 inline-block hack */ + + *zoom: 1; +} + +.btn-toolbar .btn + .btn, +.btn-toolbar .btn-group + .btn, +.btn-toolbar .btn + .btn-group { + margin-left: 5px; +} + +.btn-group > .btn { + position: relative; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-group > .btn + .btn { + margin-left: -1px; +} + +.btn-group > .btn, +.btn-group > .dropdown-menu { + font-size: 14px; +} + +.btn-group > .btn-mini { + font-size: 11px; +} + +.btn-group > .btn-small { + font-size: 12px; +} + +.btn-group > .btn-large { + font-size: 16px; +} + +.btn-group > .btn:first-child { + margin-left: 0; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; + -moz-border-radius-topleft: 4px; +} + +.btn-group > .btn:last-child, +.btn-group > .dropdown-toggle { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-bottomright: 4px; +} + +.btn-group > .btn.large:first-child { + margin-left: 0; + -webkit-border-bottom-left-radius: 6px; + border-bottom-left-radius: 6px; + -webkit-border-top-left-radius: 6px; + border-top-left-radius: 6px; + -moz-border-radius-bottomleft: 6px; + -moz-border-radius-topleft: 6px; +} + +.btn-group > .btn.large:last-child, +.btn-group > .large.dropdown-toggle { + -webkit-border-top-right-radius: 6px; + border-top-right-radius: 6px; + -webkit-border-bottom-right-radius: 6px; + border-bottom-right-radius: 6px; + -moz-border-radius-topright: 6px; + -moz-border-radius-bottomright: 6px; +} + +.btn-group > .btn:hover, +.btn-group > .btn:focus, +.btn-group > .btn:active, +.btn-group > .btn.active { + z-index: 2; +} + +.btn-group .dropdown-toggle:active, +.btn-group.open .dropdown-toggle { + outline: 0; +} + +.btn-group > .btn + .dropdown-toggle { + *padding-top: 5px; + padding-right: 8px; + *padding-bottom: 5px; + padding-left: 8px; + -webkit-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn-group > .btn-mini + .dropdown-toggle { + *padding-top: 2px; + padding-right: 5px; + *padding-bottom: 2px; + padding-left: 5px; +} + +.btn-group > .btn-small + .dropdown-toggle { + *padding-top: 5px; + *padding-bottom: 4px; +} + +.btn-group > .btn-large + .dropdown-toggle { + *padding-top: 7px; + padding-right: 12px; + *padding-bottom: 7px; + padding-left: 12px; +} + +.btn-group.open .dropdown-toggle { + background-image: none; + -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn-group.open .btn.dropdown-toggle { + background-color: #e6e6e6; +} + +.btn-group.open .btn-primary.dropdown-toggle { + background-color: #0044cc; +} + +.btn-group.open .btn-warning.dropdown-toggle { + background-color: #f89406; +} + +.btn-group.open .btn-danger.dropdown-toggle { + background-color: #bd362f; +} + +.btn-group.open .btn-success.dropdown-toggle { + background-color: #51a351; +} + +.btn-group.open .btn-info.dropdown-toggle { + background-color: #2f96b4; +} + +.btn-group.open .btn-inverse.dropdown-toggle { + background-color: #222222; +} + +.btn .caret { + margin-top: 8px; + margin-left: 0; +} + +.btn-mini .caret, +.btn-small .caret, +.btn-large .caret { + margin-top: 6px; +} + +.btn-large .caret { + border-top-width: 5px; + border-right-width: 5px; + border-left-width: 5px; +} + +.dropup .btn-large .caret { + border-top: 0; + border-bottom: 5px solid #000000; +} + +.btn-primary .caret, +.btn-warning .caret, +.btn-danger .caret, +.btn-info .caret, +.btn-success .caret, +.btn-inverse .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + +.btn-group-vertical { + display: inline-block; + *display: inline; + /* IE7 inline-block hack */ + + *zoom: 1; +} + +.btn-group-vertical .btn { + display: block; + float: none; + width: 100%; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-group-vertical .btn + .btn { + margin-top: -1px; + margin-left: 0; +} + +.btn-group-vertical .btn:first-child { + -webkit-border-radius: 4px 4px 0 0; + -moz-border-radius: 4px 4px 0 0; + border-radius: 4px 4px 0 0; +} + +.btn-group-vertical .btn:last-child { + -webkit-border-radius: 0 0 4px 4px; + -moz-border-radius: 0 0 4px 4px; + border-radius: 0 0 4px 4px; +} + +.btn-group-vertical .btn-large:first-child { + -webkit-border-radius: 6px 6px 0 0; + -moz-border-radius: 6px 6px 0 0; + border-radius: 6px 6px 0 0; +} + +.btn-group-vertical .btn-large:last-child { + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; +} + +.alert { + padding: 8px 35px 8px 14px; + margin-bottom: 20px; + color: #c09853; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); + background-color: #fcf8e3; + border: 1px solid #fbeed5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.alert h4 { + margin: 0; +} + +.alert .close { + position: relative; + top: -2px; + right: -21px; + line-height: 20px; +} + +.alert-success { + color: #468847; + background-color: #dff0d8; + border-color: #d6e9c6; +} + +.alert-danger, +.alert-error { + color: #b94a48; + background-color: #f2dede; + border-color: #eed3d7; +} + +.alert-info { + color: #3a87ad; + background-color: #d9edf7; + border-color: #bce8f1; +} + +.alert-block { + padding-top: 14px; + padding-bottom: 14px; +} + +.alert-block > p, +.alert-block > ul { + margin-bottom: 0; +} + +.alert-block p + p { + margin-top: 5px; +} + +.nav { + margin-bottom: 20px; + margin-left: 0; + list-style: none; +} + +.nav > li > a { + display: block; +} + +.nav > li > a:hover { + text-decoration: none; + background-color: #eeeeee; +} + +.nav > .pull-right { + float: right; +} + +.nav-header { + display: block; + padding: 3px 15px; + font-size: 11px; + font-weight: bold; + line-height: 20px; + color: #999999; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); + text-transform: uppercase; +} + +.nav li + .nav-header { + margin-top: 9px; +} + +.nav-list { + padding-right: 15px; + padding-left: 15px; + margin-bottom: 0; +} + +.nav-list > li > a, +.nav-list .nav-header { + margin-right: -15px; + margin-left: -15px; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); +} + +.nav-list > li > a { + padding: 3px 15px; +} + +.nav-list > .active > a, +.nav-list > .active > a:hover { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.2); + background-color: #0088cc; +} + +.nav-list [class^="icon-"] { + margin-right: 2px; +} + +.nav-list .divider { + *width: 100%; + height: 1px; + margin: 9px 1px; + *margin: -5px 0 5px; + overflow: hidden; + background-color: #e5e5e5; + border-bottom: 1px solid #ffffff; +} + +.nav-tabs, +.nav-pills { + *zoom: 1; +} + +.nav-tabs:before, +.nav-pills:before, +.nav-tabs:after, +.nav-pills:after { + display: table; + line-height: 0; + content: ""; +} + +.nav-tabs:after, +.nav-pills:after { + clear: both; +} + +.nav-tabs > li, +.nav-pills > li { + float: left; +} + +.nav-tabs > li > a, +.nav-pills > li > a { + padding-right: 12px; + padding-left: 12px; + margin-right: 2px; + line-height: 14px; +} + +.nav-tabs { + border-bottom: 1px solid #ddd; +} + +.nav-tabs > li { + margin-bottom: -1px; +} + +.nav-tabs > li > a { + padding-top: 8px; + padding-bottom: 8px; + line-height: 20px; + border: 1px solid transparent; + -webkit-border-radius: 4px 4px 0 0; + -moz-border-radius: 4px 4px 0 0; + border-radius: 4px 4px 0 0; +} + +.nav-tabs > li > a:hover { + border-color: #eeeeee #eeeeee #dddddd; +} + +.nav-tabs > .active > a, +.nav-tabs > .active > a:hover { + color: #555555; + cursor: default; + background-color: #ffffff; + border: 1px solid #ddd; + border-bottom-color: transparent; +} + +.nav-pills > li > a { + padding-top: 8px; + padding-bottom: 8px; + margin-top: 2px; + margin-bottom: 2px; + -webkit-border-radius: 5px; + -moz-border-radius: 5px; + border-radius: 5px; +} + +.nav-pills > .active > a, +.nav-pills > .active > a:hover { + color: #ffffff; + background-color: #0088cc; +} + +.nav-stacked > li { + float: none; +} + +.nav-stacked > li > a { + margin-right: 0; +} + +.nav-tabs.nav-stacked { + border-bottom: 0; +} + +.nav-tabs.nav-stacked > li > a { + border: 1px solid #ddd; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.nav-tabs.nav-stacked > li:first-child > a { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-topleft: 4px; +} + +.nav-tabs.nav-stacked > li:last-child > a { + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -moz-border-radius-bottomright: 4px; + -moz-border-radius-bottomleft: 4px; +} + +.nav-tabs.nav-stacked > li > a:hover { + z-index: 2; + border-color: #ddd; +} + +.nav-pills.nav-stacked > li > a { + margin-bottom: 3px; +} + +.nav-pills.nav-stacked > li:last-child > a { + margin-bottom: 1px; +} + +.nav-tabs .dropdown-menu { + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; +} + +.nav-pills .dropdown-menu { + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.nav .dropdown-toggle .caret { + margin-top: 6px; + border-top-color: #0088cc; + border-bottom-color: #0088cc; +} + +.nav .dropdown-toggle:hover .caret { + border-top-color: #005580; + border-bottom-color: #005580; +} + +/* move down carets for tabs */ + +.nav-tabs .dropdown-toggle .caret { + margin-top: 8px; +} + +.nav .active .dropdown-toggle .caret { + border-top-color: #fff; + border-bottom-color: #fff; +} + +.nav-tabs .active .dropdown-toggle .caret { + border-top-color: #555555; + border-bottom-color: #555555; +} + +.nav > .dropdown.active > a:hover { + cursor: pointer; +} + +.nav-tabs .open .dropdown-toggle, +.nav-pills .open .dropdown-toggle, +.nav > li.dropdown.open.active > a:hover { + color: #ffffff; + background-color: #999999; + border-color: #999999; +} + +.nav li.dropdown.open .caret, +.nav li.dropdown.open.active .caret, +.nav li.dropdown.open a:hover .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; + opacity: 1; + filter: alpha(opacity=100); +} + +.tabs-stacked .open > a:hover { + border-color: #999999; +} + +.tabbable { + *zoom: 1; +} + +.tabbable:before, +.tabbable:after { + display: table; + line-height: 0; + content: ""; +} + +.tabbable:after { + clear: both; +} + +.tab-content { + overflow: auto; +} + +.tabs-below > .nav-tabs, +.tabs-right > .nav-tabs, +.tabs-left > .nav-tabs { + border-bottom: 0; +} + +.tab-content > .tab-pane, +.pill-content > .pill-pane { + display: none; +} + +.tab-content > .active, +.pill-content > .active { + display: block; +} + +.tabs-below > .nav-tabs { + border-top: 1px solid #ddd; +} + +.tabs-below > .nav-tabs > li { + margin-top: -1px; + margin-bottom: 0; +} + +.tabs-below > .nav-tabs > li > a { + -webkit-border-radius: 0 0 4px 4px; + -moz-border-radius: 0 0 4px 4px; + border-radius: 0 0 4px 4px; +} + +.tabs-below > .nav-tabs > li > a:hover { + border-top-color: #ddd; + border-bottom-color: transparent; +} + +.tabs-below > .nav-tabs > .active > a, +.tabs-below > .nav-tabs > .active > a:hover { + border-color: transparent #ddd #ddd #ddd; +} + +.tabs-left > .nav-tabs > li, +.tabs-right > .nav-tabs > li { + float: none; +} + +.tabs-left > .nav-tabs > li > a, +.tabs-right > .nav-tabs > li > a { + min-width: 74px; + margin-right: 0; + margin-bottom: 3px; +} + +.tabs-left > .nav-tabs { + float: left; + margin-right: 19px; + border-right: 1px solid #ddd; +} + +.tabs-left > .nav-tabs > li > a { + margin-right: -1px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.tabs-left > .nav-tabs > li > a:hover { + border-color: #eeeeee #dddddd #eeeeee #eeeeee; +} + +.tabs-left > .nav-tabs .active > a, +.tabs-left > .nav-tabs .active > a:hover { + border-color: #ddd transparent #ddd #ddd; + *border-right-color: #ffffff; +} + +.tabs-right > .nav-tabs { + float: right; + margin-left: 19px; + border-left: 1px solid #ddd; +} + +.tabs-right > .nav-tabs > li > a { + margin-left: -1px; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.tabs-right > .nav-tabs > li > a:hover { + border-color: #eeeeee #eeeeee #eeeeee #dddddd; +} + +.tabs-right > .nav-tabs .active > a, +.tabs-right > .nav-tabs .active > a:hover { + border-color: #ddd #ddd #ddd transparent; + *border-left-color: #ffffff; +} + +.nav > .disabled > a { + color: #999999; +} + +.nav > .disabled > a:hover { + text-decoration: none; + cursor: default; + background-color: transparent; +} + +.navbar { + *position: relative; + *z-index: 2; + margin-bottom: 20px; + overflow: visible; + color: #777777; +} + +.navbar-inner { + min-height: 40px; + padding-right: 20px; + padding-left: 20px; + background-color: #fafafa; + background-image: -moz-linear-gradient(top, #ffffff, #f2f2f2); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#f2f2f2)); + background-image: -webkit-linear-gradient(top, #ffffff, #f2f2f2); + background-image: -o-linear-gradient(top, #ffffff, #f2f2f2); + background-image: linear-gradient(to bottom, #ffffff, #f2f2f2); + background-repeat: repeat-x; + border: 1px solid #d4d4d4; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff2f2f2', GradientType=0); + *zoom: 1; + -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); + -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); + box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); +} + +.navbar-inner:before, +.navbar-inner:after { + display: table; + line-height: 0; + content: ""; +} + +.navbar-inner:after { + clear: both; +} + +.navbar .container { + width: auto; +} + +.nav-collapse.collapse { + height: auto; +} + +.navbar .brand { + display: block; + float: left; + padding: 10px 20px 10px; + margin-left: -20px; + font-size: 20px; + font-weight: 200; + color: #777777; + text-shadow: 0 1px 0 #ffffff; +} + +.navbar .brand:hover { + text-decoration: none; +} + +.navbar-text { + margin-bottom: 0; + line-height: 40px; +} + +.navbar-link { + color: #777777; +} + +.navbar-link:hover { + color: #333333; +} + +.navbar .divider-vertical { + height: 40px; + margin: 0 9px; + border-right: 1px solid #ffffff; + border-left: 1px solid #f2f2f2; +} + +.navbar .btn, +.navbar .btn-group { + margin-top: 5px; +} + +.navbar .btn-group .btn, +.navbar .input-prepend .btn, +.navbar .input-append .btn { + margin-top: 0; +} + +.navbar-form { + margin-bottom: 0; + *zoom: 1; +} + +.navbar-form:before, +.navbar-form:after { + display: table; + line-height: 0; + content: ""; +} + +.navbar-form:after { + clear: both; +} + +.navbar-form input, +.navbar-form select, +.navbar-form .radio, +.navbar-form .checkbox { + margin-top: 5px; +} + +.navbar-form input, +.navbar-form select, +.navbar-form .btn { + display: inline-block; + margin-bottom: 0; +} + +.navbar-form input[type="image"], +.navbar-form input[type="checkbox"], +.navbar-form input[type="radio"] { + margin-top: 3px; +} + +.navbar-form .input-append, +.navbar-form .input-prepend { + margin-top: 6px; + white-space: nowrap; +} + +.navbar-form .input-append input, +.navbar-form .input-prepend input { + margin-top: 0; +} + +.navbar-search { + position: relative; + float: left; + margin-top: 5px; + margin-bottom: 0; +} + +.navbar-search .search-query { + padding: 4px 14px; + margin-bottom: 0; + font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; + font-size: 13px; + font-weight: normal; + line-height: 1; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +.navbar-static-top { + position: static; + width: 100%; + margin-bottom: 0; +} + +.navbar-static-top .navbar-inner { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.navbar-fixed-top, +.navbar-fixed-bottom { + position: fixed; + right: 0; + left: 0; + z-index: 1030; + margin-bottom: 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-static-top .navbar-inner { + border-width: 0 0 1px; +} + +.navbar-fixed-bottom .navbar-inner { + border-width: 1px 0 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-fixed-bottom .navbar-inner { + padding-right: 0; + padding-left: 0; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.navbar-static-top .container, +.navbar-fixed-top .container, +.navbar-fixed-bottom .container { + width: 940px; +} + +.navbar-fixed-top { + top: 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-static-top .navbar-inner { + -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); + box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); +} + +.navbar-fixed-bottom { + bottom: 0; +} + +.navbar-fixed-bottom .navbar-inner { + -webkit-box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); + box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); +} + +.navbar .nav { + position: relative; + left: 0; + display: block; + float: left; + margin: 0 10px 0 0; +} + +.navbar .nav.pull-right { + float: right; + margin-right: 0; +} + +.navbar .nav > li { + float: left; +} + +.navbar .nav > li > a { + float: none; + padding: 10px 15px 10px; + color: #777777; + text-decoration: none; + text-shadow: 0 1px 0 #ffffff; +} + +.navbar .nav .dropdown-toggle .caret { + margin-top: 8px; +} + +.navbar .nav > li > a:focus, +.navbar .nav > li > a:hover { + color: #333333; + text-decoration: none; + background-color: transparent; +} + +.navbar .nav > .active > a, +.navbar .nav > .active > a:hover, +.navbar .nav > .active > a:focus { + color: #555555; + text-decoration: none; + background-color: #e5e5e5; + -webkit-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); + -moz-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); + box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); +} + +.navbar .btn-navbar { + display: none; + float: right; + padding: 7px 10px; + margin-right: 5px; + margin-left: 5px; + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #ededed; + *background-color: #e5e5e5; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f2f2f2), to(#e5e5e5)); + background-image: -webkit-linear-gradient(top, #f2f2f2, #e5e5e5); + background-image: -o-linear-gradient(top, #f2f2f2, #e5e5e5); + background-image: linear-gradient(to bottom, #f2f2f2, #e5e5e5); + background-image: -moz-linear-gradient(top, #f2f2f2, #e5e5e5); + background-repeat: repeat-x; + border-color: #e5e5e5 #e5e5e5 #bfbfbf; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fff2f2f2', endColorstr='#ffe5e5e5', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); +} + +.navbar .btn-navbar:hover, +.navbar .btn-navbar:active, +.navbar .btn-navbar.active, +.navbar .btn-navbar.disabled, +.navbar .btn-navbar[disabled] { + color: #ffffff; + background-color: #e5e5e5; + *background-color: #d9d9d9; +} + +.navbar .btn-navbar:active, +.navbar .btn-navbar.active { + background-color: #cccccc \9; +} + +.navbar .btn-navbar .icon-bar { + display: block; + width: 18px; + height: 2px; + background-color: #f5f5f5; + -webkit-border-radius: 1px; + -moz-border-radius: 1px; + border-radius: 1px; + -webkit-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); + -moz-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); + box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); +} + +.btn-navbar .icon-bar + .icon-bar { + margin-top: 3px; +} + +.navbar .nav > li > .dropdown-menu:before { + position: absolute; + top: -7px; + left: 9px; + display: inline-block; + border-right: 7px solid transparent; + border-bottom: 7px solid #ccc; + border-left: 7px solid transparent; + border-bottom-color: rgba(0, 0, 0, 0.2); + content: ''; +} + +.navbar .nav > li > .dropdown-menu:after { + position: absolute; + top: -6px; + left: 10px; + display: inline-block; + border-right: 6px solid transparent; + border-bottom: 6px solid #ffffff; + border-left: 6px solid transparent; + content: ''; +} + +.navbar-fixed-bottom .nav > li > .dropdown-menu:before { + top: auto; + bottom: -7px; + border-top: 7px solid #ccc; + border-bottom: 0; + border-top-color: rgba(0, 0, 0, 0.2); +} + +.navbar-fixed-bottom .nav > li > .dropdown-menu:after { + top: auto; + bottom: -6px; + border-top: 6px solid #ffffff; + border-bottom: 0; +} + +.navbar .nav li.dropdown.open > .dropdown-toggle, +.navbar .nav li.dropdown.active > .dropdown-toggle, +.navbar .nav li.dropdown.open.active > .dropdown-toggle { + color: #555555; + background-color: #e5e5e5; +} + +.navbar .nav li.dropdown > .dropdown-toggle .caret { + border-top-color: #777777; + border-bottom-color: #777777; +} + +.navbar .nav li.dropdown.open > .dropdown-toggle .caret, +.navbar .nav li.dropdown.active > .dropdown-toggle .caret, +.navbar .nav li.dropdown.open.active > .dropdown-toggle .caret { + border-top-color: #555555; + border-bottom-color: #555555; +} + +.navbar .pull-right > li > .dropdown-menu, +.navbar .nav > li > .dropdown-menu.pull-right { + right: 0; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu:before, +.navbar .nav > li > .dropdown-menu.pull-right:before { + right: 12px; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu:after, +.navbar .nav > li > .dropdown-menu.pull-right:after { + right: 13px; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu .dropdown-menu, +.navbar .nav > li > .dropdown-menu.pull-right .dropdown-menu { + right: 100%; + left: auto; + margin-right: -1px; + margin-left: 0; + -webkit-border-radius: 6px 0 6px 6px; + -moz-border-radius: 6px 0 6px 6px; + border-radius: 6px 0 6px 6px; +} + +.navbar-inverse { + color: #999999; +} + +.navbar-inverse .navbar-inner { + background-color: #1b1b1b; + background-image: -moz-linear-gradient(top, #222222, #111111); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#222222), to(#111111)); + background-image: -webkit-linear-gradient(top, #222222, #111111); + background-image: -o-linear-gradient(top, #222222, #111111); + background-image: linear-gradient(to bottom, #222222, #111111); + background-repeat: repeat-x; + border-color: #252525; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff222222', endColorstr='#ff111111', GradientType=0); +} + +.navbar-inverse .brand, +.navbar-inverse .nav > li > a { + color: #999999; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); +} + +.navbar-inverse .brand:hover, +.navbar-inverse .nav > li > a:hover { + color: #ffffff; +} + +.navbar-inverse .nav > li > a:focus, +.navbar-inverse .nav > li > a:hover { + color: #ffffff; + background-color: transparent; +} + +.navbar-inverse .nav .active > a, +.navbar-inverse .nav .active > a:hover, +.navbar-inverse .nav .active > a:focus { + color: #ffffff; + background-color: #111111; +} + +.navbar-inverse .navbar-link { + color: #999999; +} + +.navbar-inverse .navbar-link:hover { + color: #ffffff; +} + +.navbar-inverse .divider-vertical { + border-right-color: #222222; + border-left-color: #111111; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle { + color: #ffffff; + background-color: #111111; +} + +.navbar-inverse .nav li.dropdown > .dropdown-toggle .caret { + border-top-color: #999999; + border-bottom-color: #999999; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle .caret, +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle .caret, +.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + +.navbar-inverse .navbar-search .search-query { + color: #ffffff; + background-color: #515151; + border-color: #111111; + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + -webkit-transition: none; + -moz-transition: none; + -o-transition: none; + transition: none; +} + +.navbar-inverse .navbar-search .search-query:-moz-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query:-ms-input-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query::-webkit-input-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query:focus, +.navbar-inverse .navbar-search .search-query.focused { + padding: 5px 15px; + color: #333333; + text-shadow: 0 1px 0 #ffffff; + background-color: #ffffff; + border: 0; + outline: 0; + -webkit-box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); + -moz-box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); + box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); +} + +.navbar-inverse .btn-navbar { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #0e0e0e; + *background-color: #040404; + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#151515), to(#040404)); + background-image: -webkit-linear-gradient(top, #151515, #040404); + background-image: -o-linear-gradient(top, #151515, #040404); + background-image: linear-gradient(to bottom, #151515, #040404); + background-image: -moz-linear-gradient(top, #151515, #040404); + background-repeat: repeat-x; + border-color: #040404 #040404 #000000; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff151515', endColorstr='#ff040404', GradientType=0); + filter: progid:dximagetransform.microsoft.gradient(enabled=false); +} + +.navbar-inverse .btn-navbar:hover, +.navbar-inverse .btn-navbar:active, +.navbar-inverse .btn-navbar.active, +.navbar-inverse .btn-navbar.disabled, +.navbar-inverse .btn-navbar[disabled] { + color: #ffffff; + background-color: #040404; + *background-color: #000000; +} + +.navbar-inverse .btn-navbar:active, +.navbar-inverse .btn-navbar.active { + background-color: #000000 \9; +} + +.breadcrumb { + padding: 8px 15px; + margin: 0 0 20px; + list-style: none; + background-color: #f5f5f5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.breadcrumb li { + display: inline-block; + *display: inline; + text-shadow: 0 1px 0 #ffffff; + *zoom: 1; +} + +.breadcrumb .divider { + padding: 0 5px; + color: #ccc; +} + +.breadcrumb .active { + color: #999999; +} + +.pagination { + height: 40px; + margin: 20px 0; +} + +.pagination ul { + display: inline-block; + *display: inline; + margin-bottom: 0; + margin-left: 0; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; + *zoom: 1; + -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.pagination ul > li { + display: inline; +} + +.pagination ul > li > a, +.pagination ul > li > span { + float: left; + padding: 0 14px; + line-height: 38px; + text-decoration: none; + background-color: #ffffff; + border: 1px solid #dddddd; + border-left-width: 0; +} + +.pagination ul > li > a:hover, +.pagination ul > .active > a, +.pagination ul > .active > span { + background-color: #f5f5f5; +} + +.pagination ul > .active > a, +.pagination ul > .active > span { + color: #999999; + cursor: default; +} + +.pagination ul > .disabled > span, +.pagination ul > .disabled > a, +.pagination ul > .disabled > a:hover { + color: #999999; + cursor: default; + background-color: transparent; +} + +.pagination ul > li:first-child > a, +.pagination ul > li:first-child > span { + border-left-width: 1px; + -webkit-border-radius: 3px 0 0 3px; + -moz-border-radius: 3px 0 0 3px; + border-radius: 3px 0 0 3px; +} + +.pagination ul > li:last-child > a, +.pagination ul > li:last-child > span { + -webkit-border-radius: 0 3px 3px 0; + -moz-border-radius: 0 3px 3px 0; + border-radius: 0 3px 3px 0; +} + +.pagination-centered { + text-align: center; +} + +.pagination-right { + text-align: right; +} + +.pager { + margin: 20px 0; + text-align: center; + list-style: none; + *zoom: 1; +} + +.pager:before, +.pager:after { + display: table; + line-height: 0; + content: ""; +} + +.pager:after { + clear: both; +} + +.pager li { + display: inline; +} + +.pager a, +.pager span { + display: inline-block; + padding: 5px 14px; + background-color: #fff; + border: 1px solid #ddd; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +.pager a:hover { + text-decoration: none; + background-color: #f5f5f5; +} + +.pager .next a, +.pager .next span { + float: right; +} + +.pager .previous a { + float: left; +} + +.pager .disabled a, +.pager .disabled a:hover, +.pager .disabled span { + color: #999999; + cursor: default; + background-color: #fff; +} + +.modal-open .modal .dropdown-menu { + z-index: 2050; +} + +.modal-open .modal .dropdown.open { + *z-index: 2050; +} + +.modal-open .modal .popover { + z-index: 2060; +} + +.modal-open .modal .tooltip { + z-index: 2080; +} + +.modal-backdrop { + position: fixed; + top: 0; + right: 0; + bottom: 0; + left: 0; + z-index: 1040; + background-color: #000000; +} + +.modal-backdrop.fade { + opacity: 0; +} + +.modal-backdrop, +.modal-backdrop.fade.in { + opacity: 0.8; + filter: alpha(opacity=80); +} + +.modal { + position: fixed; + top: 50%; + left: 50%; + z-index: 1050; + width: 560px; + margin: -250px 0 0 -280px; + overflow: auto; + background-color: #ffffff; + border: 1px solid #999; + border: 1px solid rgba(0, 0, 0, 0.3); + *border: 1px solid #999; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + -moz-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + -webkit-background-clip: padding-box; + -moz-background-clip: padding-box; + background-clip: padding-box; +} + +.modal.fade { + top: -25%; + -webkit-transition: opacity 0.3s linear, top 0.3s ease-out; + -moz-transition: opacity 0.3s linear, top 0.3s ease-out; + -o-transition: opacity 0.3s linear, top 0.3s ease-out; + transition: opacity 0.3s linear, top 0.3s ease-out; +} + +.modal.fade.in { + top: 50%; +} + +.modal-header { + padding: 9px 15px; + border-bottom: 1px solid #eee; +} + +.modal-header .close { + margin-top: 2px; +} + +.modal-header h3 { + margin: 0; + line-height: 30px; +} + +.modal-body { + max-height: 400px; + padding: 15px; + overflow-y: auto; +} + +.modal-form { + margin-bottom: 0; +} + +.modal-footer { + padding: 14px 15px 15px; + margin-bottom: 0; + text-align: right; + background-color: #f5f5f5; + border-top: 1px solid #ddd; + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; + *zoom: 1; + -webkit-box-shadow: inset 0 1px 0 #ffffff; + -moz-box-shadow: inset 0 1px 0 #ffffff; + box-shadow: inset 0 1px 0 #ffffff; +} + +.modal-footer:before, +.modal-footer:after { + display: table; + line-height: 0; + content: ""; +} + +.modal-footer:after { + clear: both; +} + +.modal-footer .btn + .btn { + margin-bottom: 0; + margin-left: 5px; +} + +.modal-footer .btn-group .btn + .btn { + margin-left: -1px; +} + +.tooltip { + position: absolute; + z-index: 1030; + display: block; + padding: 5px; + font-size: 11px; + opacity: 0; + filter: alpha(opacity=0); + visibility: visible; +} + +.tooltip.in { + opacity: 0.8; + filter: alpha(opacity=80); +} + +.tooltip.top { + margin-top: -3px; +} + +.tooltip.right { + margin-left: 3px; +} + +.tooltip.bottom { + margin-top: 3px; +} + +.tooltip.left { + margin-left: -3px; +} + +.tooltip-inner { + max-width: 200px; + padding: 3px 8px; + color: #ffffff; + text-align: center; + text-decoration: none; + background-color: #000000; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.tooltip-arrow { + position: absolute; + width: 0; + height: 0; + border-color: transparent; + border-style: solid; +} + +.tooltip.top .tooltip-arrow { + bottom: 0; + left: 50%; + margin-left: -5px; + border-top-color: #000000; + border-width: 5px 5px 0; +} + +.tooltip.right .tooltip-arrow { + top: 50%; + left: 0; + margin-top: -5px; + border-right-color: #000000; + border-width: 5px 5px 5px 0; +} + +.tooltip.left .tooltip-arrow { + top: 50%; + right: 0; + margin-top: -5px; + border-left-color: #000000; + border-width: 5px 0 5px 5px; +} + +.tooltip.bottom .tooltip-arrow { + top: 0; + left: 50%; + margin-left: -5px; + border-bottom-color: #000000; + border-width: 0 5px 5px; +} + +.popover { + position: absolute; + top: 0; + left: 0; + z-index: 1010; + display: none; + width: 236px; + padding: 1px; + background-color: #ffffff; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.2); + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -moz-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -webkit-background-clip: padding-box; + -moz-background-clip: padding; + background-clip: padding-box; +} + +.popover.top { + margin-bottom: 10px; +} + +.popover.right { + margin-left: 10px; +} + +.popover.bottom { + margin-top: 10px; +} + +.popover.left { + margin-right: 10px; +} + +.popover-title { + padding: 8px 14px; + margin: 0; + font-size: 14px; + font-weight: normal; + line-height: 18px; + background-color: #f7f7f7; + border-bottom: 1px solid #ebebeb; + -webkit-border-radius: 5px 5px 0 0; + -moz-border-radius: 5px 5px 0 0; + border-radius: 5px 5px 0 0; +} + +.popover-content { + padding: 9px 14px; +} + +.popover-content p, +.popover-content ul, +.popover-content ol { + margin-bottom: 0; +} + +.popover .arrow, +.popover .arrow:after { + position: absolute; + display: inline-block; + width: 0; + height: 0; + border-color: transparent; + border-style: solid; +} + +.popover .arrow:after { + z-index: -1; + content: ""; +} + +.popover.top .arrow { + bottom: -10px; + left: 50%; + margin-left: -10px; + border-top-color: #ffffff; + border-width: 10px 10px 0; +} + +.popover.top .arrow:after { + bottom: -1px; + left: -11px; + border-top-color: rgba(0, 0, 0, 0.25); + border-width: 11px 11px 0; +} + +.popover.right .arrow { + top: 50%; + left: -10px; + margin-top: -10px; + border-right-color: #ffffff; + border-width: 10px 10px 10px 0; +} + +.popover.right .arrow:after { + bottom: -11px; + left: -1px; + border-right-color: rgba(0, 0, 0, 0.25); + border-width: 11px 11px 11px 0; +} + +.popover.bottom .arrow { + top: -10px; + left: 50%; + margin-left: -10px; + border-bottom-color: #ffffff; + border-width: 0 10px 10px; +} + +.popover.bottom .arrow:after { + top: -1px; + left: -11px; + border-bottom-color: rgba(0, 0, 0, 0.25); + border-width: 0 11px 11px; +} + +.popover.left .arrow { + top: 50%; + right: -10px; + margin-top: -10px; + border-left-color: #ffffff; + border-width: 10px 0 10px 10px; +} + +.popover.left .arrow:after { + right: -1px; + bottom: -11px; + border-left-color: rgba(0, 0, 0, 0.25); + border-width: 11px 0 11px 11px; +} + +.thumbnails { + margin-left: -20px; + list-style: none; + *zoom: 1; +} + +.thumbnails:before, +.thumbnails:after { + display: table; + line-height: 0; + content: ""; +} + +.thumbnails:after { + clear: both; +} + +.row-fluid .thumbnails { + margin-left: 0; +} + +.thumbnails > li { + float: left; + margin-bottom: 20px; + margin-left: 20px; +} + +.thumbnail { + display: block; + padding: 4px; + line-height: 20px; + border: 1px solid #ddd; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + -webkit-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + -moz-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + -webkit-transition: all 0.2s ease-in-out; + -moz-transition: all 0.2s ease-in-out; + -o-transition: all 0.2s ease-in-out; + transition: all 0.2s ease-in-out; +} + +a.thumbnail:hover { + border-color: #0088cc; + -webkit-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); + -moz-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); + box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); +} + +.thumbnail > img { + display: block; + max-width: 100%; + margin-right: auto; + margin-left: auto; +} + +.thumbnail .caption { + padding: 9px; + color: #555555; +} + +.label, +.badge { + font-size: 11.844px; + font-weight: bold; + line-height: 14px; + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + white-space: nowrap; + vertical-align: baseline; + background-color: #999999; +} + +.label { + padding: 1px 4px 2px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.badge { + padding: 1px 9px 2px; + -webkit-border-radius: 9px; + -moz-border-radius: 9px; + border-radius: 9px; +} + +a.label:hover, +a.badge:hover { + color: #ffffff; + text-decoration: none; + cursor: pointer; +} + +.label-important, +.badge-important { + background-color: #b94a48; +} + +.label-important[href], +.badge-important[href] { + background-color: #953b39; +} + +.label-warning, +.badge-warning { + background-color: #f89406; +} + +.label-warning[href], +.badge-warning[href] { + background-color: #c67605; +} + +.label-success, +.badge-success { + background-color: #468847; +} + +.label-success[href], +.badge-success[href] { + background-color: #356635; +} + +.label-info, +.badge-info { + background-color: #3a87ad; +} + +.label-info[href], +.badge-info[href] { + background-color: #2d6987; +} + +.label-inverse, +.badge-inverse { + background-color: #333333; +} + +.label-inverse[href], +.badge-inverse[href] { + background-color: #1a1a1a; +} + +.btn .label, +.btn .badge { + position: relative; + top: -1px; +} + +.btn-mini .label, +.btn-mini .badge { + top: 0; +} + +@-webkit-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-moz-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-ms-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-o-keyframes progress-bar-stripes { + from { + background-position: 0 0; + } + to { + background-position: 40px 0; + } +} + +@keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +.progress { + height: 20px; + margin-bottom: 20px; + overflow: hidden; + background-color: #f7f7f7; + background-image: -moz-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f5f5f5), to(#f9f9f9)); + background-image: -webkit-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: -o-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: linear-gradient(to bottom, #f5f5f5, #f9f9f9); + background-repeat: repeat-x; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#fff9f9f9', GradientType=0); + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); +} + +.progress .bar { + float: left; + width: 0; + height: 100%; + font-size: 12px; + color: #ffffff; + text-align: center; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #0e90d2; + background-image: -moz-linear-gradient(top, #149bdf, #0480be); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#149bdf), to(#0480be)); + background-image: -webkit-linear-gradient(top, #149bdf, #0480be); + background-image: -o-linear-gradient(top, #149bdf, #0480be); + background-image: linear-gradient(to bottom, #149bdf, #0480be); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff149bdf', endColorstr='#ff0480be', GradientType=0); + -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -moz-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + -webkit-transition: width 0.6s ease; + -moz-transition: width 0.6s ease; + -o-transition: width 0.6s ease; + transition: width 0.6s ease; +} + +.progress .bar + .bar { + -webkit-box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -moz-box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); + box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); +} + +.progress-striped .bar { + background-color: #149bdf; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + -webkit-background-size: 40px 40px; + -moz-background-size: 40px 40px; + -o-background-size: 40px 40px; + background-size: 40px 40px; +} + +.progress.active .bar { + -webkit-animation: progress-bar-stripes 2s linear infinite; + -moz-animation: progress-bar-stripes 2s linear infinite; + -ms-animation: progress-bar-stripes 2s linear infinite; + -o-animation: progress-bar-stripes 2s linear infinite; + animation: progress-bar-stripes 2s linear infinite; +} + +.progress-danger .bar, +.progress .bar-danger { + background-color: #dd514c; + background-image: -moz-linear-gradient(top, #ee5f5b, #c43c35); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ee5f5b), to(#c43c35)); + background-image: -webkit-linear-gradient(top, #ee5f5b, #c43c35); + background-image: -o-linear-gradient(top, #ee5f5b, #c43c35); + background-image: linear-gradient(to bottom, #ee5f5b, #c43c35); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffc43c35', GradientType=0); +} + +.progress-danger.progress-striped .bar, +.progress-striped .bar-danger { + background-color: #ee5f5b; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-success .bar, +.progress .bar-success { + background-color: #5eb95e; + background-image: -moz-linear-gradient(top, #62c462, #57a957); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#62c462), to(#57a957)); + background-image: -webkit-linear-gradient(top, #62c462, #57a957); + background-image: -o-linear-gradient(top, #62c462, #57a957); + background-image: linear-gradient(to bottom, #62c462, #57a957); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff57a957', GradientType=0); +} + +.progress-success.progress-striped .bar, +.progress-striped .bar-success { + background-color: #62c462; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-info .bar, +.progress .bar-info { + background-color: #4bb1cf; + background-image: -moz-linear-gradient(top, #5bc0de, #339bb9); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#5bc0de), to(#339bb9)); + background-image: -webkit-linear-gradient(top, #5bc0de, #339bb9); + background-image: -o-linear-gradient(top, #5bc0de, #339bb9); + background-image: linear-gradient(to bottom, #5bc0de, #339bb9); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff339bb9', GradientType=0); +} + +.progress-info.progress-striped .bar, +.progress-striped .bar-info { + background-color: #5bc0de; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-warning .bar, +.progress .bar-warning { + background-color: #faa732; + background-image: -moz-linear-gradient(top, #fbb450, #f89406); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); + background-image: -webkit-linear-gradient(top, #fbb450, #f89406); + background-image: -o-linear-gradient(top, #fbb450, #f89406); + background-image: linear-gradient(to bottom, #fbb450, #f89406); + background-repeat: repeat-x; + filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); +} + +.progress-warning.progress-striped .bar, +.progress-striped .bar-warning { + background-color: #fbb450; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.accordion { + margin-bottom: 20px; +} + +.accordion-group { + margin-bottom: 2px; + border: 1px solid #e5e5e5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.accordion-heading { + border-bottom: 0; +} + +.accordion-heading .accordion-toggle { + display: block; + padding: 8px 15px; +} + +.accordion-toggle { + cursor: pointer; +} + +.accordion-inner { + padding: 9px 15px; + border-top: 1px solid #e5e5e5; +} + +.carousel { + position: relative; + margin-bottom: 20px; + line-height: 1; +} + +.carousel-inner { + position: relative; + width: 100%; + overflow: hidden; +} + +.carousel .item { + position: relative; + display: none; + -webkit-transition: 0.6s ease-in-out left; + -moz-transition: 0.6s ease-in-out left; + -o-transition: 0.6s ease-in-out left; + transition: 0.6s ease-in-out left; +} + +.carousel .item > img { + display: block; + line-height: 1; +} + +.carousel .active, +.carousel .next, +.carousel .prev { + display: block; +} + +.carousel .active { + left: 0; +} + +.carousel .next, +.carousel .prev { + position: absolute; + top: 0; + width: 100%; +} + +.carousel .next { + left: 100%; +} + +.carousel .prev { + left: -100%; +} + +.carousel .next.left, +.carousel .prev.right { + left: 0; +} + +.carousel .active.left { + left: -100%; +} + +.carousel .active.right { + left: 100%; +} + +.carousel-control { + position: absolute; + top: 40%; + left: 15px; + width: 40px; + height: 40px; + margin-top: -20px; + font-size: 60px; + font-weight: 100; + line-height: 30px; + color: #ffffff; + text-align: center; + background: #222222; + border: 3px solid #ffffff; + -webkit-border-radius: 23px; + -moz-border-radius: 23px; + border-radius: 23px; + opacity: 0.5; + filter: alpha(opacity=50); +} + +.carousel-control.right { + right: 15px; + left: auto; +} + 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#fff;-webkit-border-radius:23px;-moz-border-radius:23px;border-radius:23px;opacity:.5;filter:alpha(opacity=50)}.carousel-control.right{right:15px;left:auto}.carousel-control:hover{color:#fff;text-decoration:none;opacity:.9;filter:alpha(opacity=90)}.carousel-caption{position:absolute;right:0;bottom:0;left:0;padding:15px;background:#333;background:rgba(0,0,0,0.75)}.carousel-caption h4,.carousel-caption p{line-height:20px;color:#fff}.carousel-caption h4{margin:0 0 5px}.carousel-caption p{margin-bottom:0}.hero-unit{padding:60px;margin-bottom:30px;background-color:#eee;-webkit-border-radius:6px;-moz-border-radius:6px;border-radius:6px}.hero-unit h1{margin-bottom:0;font-size:60px;line-height:1;letter-spacing:-1px;color:inherit}.hero-unit p{font-size:18px;font-weight:200;line-height:30px;color:inherit}.pull-right{float:right}.pull-left{float:left}.hide{display:none}.show{display:block}.invisible{visibility:hidden}.affix{position:fixed} diff --git a/wqflask/wqflask/static/packages/bootstrap-old/css/docs.css b/wqflask/wqflask/static/packages/bootstrap-old/css/docs.css new file mode 100644 index 00000000..7efd72cd --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/css/docs.css @@ -0,0 +1,1001 @@ +/* Add additional stylesheets below +-------------------------------------------------- */ +/* + Bootstrap's documentation styles + Special styles for presenting Bootstrap's documentation and examples +*/ + + + +/* Body and structure +-------------------------------------------------- */ + +body { + position: relative; + padding-top: 40px; +} + +/* Code in headings */ +h3 code { + font-size: 14px; + font-weight: normal; +} + + + +/* Tweak navbar brand link to be super sleek +-------------------------------------------------- */ + +body > .navbar { + font-size: 13px; +} + +/* Change the docs' brand */ +body > .navbar .brand { + padding-right: 0; + padding-left: 0; + margin-left: 20px; + float: right; + font-weight: bold; + color: #000; + text-shadow: 0 1px 0 rgba(255,255,255,.1), 0 0 30px rgba(255,255,255,.125); + -webkit-transition: all .2s linear; + -moz-transition: all .2s linear; + transition: all .2s linear; +} +body > .navbar .brand:hover { + text-decoration: none; + text-shadow: 0 1px 0 rgba(255,255,255,.1), 0 0 30px rgba(255,255,255,.4); +} + + +/* Sections +-------------------------------------------------- */ + +/* padding for in-page bookmarks and fixed navbar */ +section { + padding-top: 30px; +} +section > .page-header, +section > .lead { + color: #5a5a5a; +} +section > ul li { + margin-bottom: 5px; +} + +/* Separators (hr) */ +.bs-docs-separator { + margin: 40px 0 39px; +} + +/* Faded out hr */ +hr.soften { + height: 1px; + margin: 70px 0; + background-image: -webkit-linear-gradient(left, rgba(0,0,0,0), rgba(0,0,0,.1), rgba(0,0,0,0)); + background-image: -moz-linear-gradient(left, rgba(0,0,0,0), rgba(0,0,0,.1), rgba(0,0,0,0)); + background-image: -ms-linear-gradient(left, rgba(0,0,0,0), rgba(0,0,0,.1), rgba(0,0,0,0)); + background-image: -o-linear-gradient(left, rgba(0,0,0,0), rgba(0,0,0,.1), rgba(0,0,0,0)); + border: 0; +} + + + +/* Jumbotrons +-------------------------------------------------- */ + +/* Base class +------------------------- */ +.jumbotron { + position: relative; + padding: 40px 0; + color: #fff; + text-align: center; + text-shadow: 0 1px 3px rgba(0,0,0,.4), 0 0 30px rgba(0,0,0,.075); + background: #020031; /* Old browsers */ + background: -moz-linear-gradient(45deg, #020031 0%, #6d3353 100%); /* FF3.6+ */ + background: -webkit-gradient(linear, left bottom, right top, color-stop(0%,#020031), color-stop(100%,#6d3353)); /* Chrome,Safari4+ */ + background: -webkit-linear-gradient(45deg, #020031 0%,#6d3353 100%); /* Chrome10+,Safari5.1+ */ + background: -o-linear-gradient(45deg, #020031 0%,#6d3353 100%); /* Opera 11.10+ */ + background: -ms-linear-gradient(45deg, #020031 0%,#6d3353 100%); /* IE10+ */ + background: linear-gradient(45deg, #020031 0%,#6d3353 100%); /* W3C */ + filter: progid:DXImageTransform.Microsoft.gradient( startColorstr='#020031', endColorstr='#6d3353',GradientType=1 ); /* IE6-9 fallback on horizontal gradient */ + -webkit-box-shadow: inset 0 3px 7px rgba(0,0,0,.2), inset 0 -3px 7px rgba(0,0,0,.2); + -moz-box-shadow: inset 0 3px 7px rgba(0,0,0,.2), inset 0 -3px 7px rgba(0,0,0,.2); + box-shadow: inset 0 3px 7px rgba(0,0,0,.2), inset 0 -3px 7px rgba(0,0,0,.2); +} +.jumbotron h1 { + font-size: 80px; + font-weight: bold; + letter-spacing: -1px; + line-height: 1; +} +.jumbotron p { + font-size: 24px; + font-weight: 300; + line-height: 30px; + margin-bottom: 30px; +} + +/* Link styles (used on .masthead-links as well) */ +.jumbotron a { + color: #fff; + color: rgba(255,255,255,.5); + -webkit-transition: all .2s ease-in-out; + -moz-transition: all .2s ease-in-out; + transition: all .2s ease-in-out; +} +.jumbotron a:hover { + color: #fff; + text-shadow: 0 0 10px rgba(255,255,255,.25); +} + +/* Download button */ +.masthead .btn { + padding: 14px 24px; + font-size: 24px; + font-weight: 200; + color: #fff; /* redeclare to override the `.jumbotron a` */ + border: 0; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); + -moz-box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); + box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); + -webkit-transition: none; + -moz-transition: none; + transition: none; +} +.masthead .btn:hover { + -webkit-box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); + -moz-box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); + box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25); +} +.masthead .btn:active { + -webkit-box-shadow: inset 0 2px 4px rgba(0,0,0,.1), 0 1px 0 rgba(255,255,255,.1); + -moz-box-shadow: inset 0 2px 4px rgba(0,0,0,.1), 0 1px 0 rgba(255,255,255,.1); + box-shadow: inset 0 2px 4px rgba(0,0,0,.1), 0 1px 0 rgba(255,255,255,.1); +} + + +/* Pattern overlay +------------------------- */ +.jumbotron .container { + position: relative; + z-index: 2; +} +.jumbotron:after { + content: ''; + display: block; + position: absolute; + top: 0; + right: 0; + bottom: 0; + left: 0; + background: url(../img/bs-docs-masthead-pattern.png) repeat center center; + opacity: .4; +} + +/* Masthead (docs home) +------------------------- */ +.masthead { + padding: 70px 0 80px; + margin-bottom: 0; + color: #fff; +} +.masthead h1 { + font-size: 120px; + line-height: 1; + letter-spacing: -2px; +} +.masthead p { + font-size: 40px; + font-weight: 200; + line-height: 1.25; +} + +/* Textual links in masthead */ +.masthead-links { + margin: 0; + list-style: none; +} +.masthead-links li { + display: inline; + padding: 0 10px; + color: rgba(255,255,255,.25); +} + +/* Social proof buttons from GitHub & Twitter */ +.bs-docs-social { + padding: 15px 0; + text-align: center; + background-color: #f5f5f5; + border-top: 1px solid #fff; + border-bottom: 1px solid #ddd; +} + +/* Quick links on Home */ +.bs-docs-social-buttons { + margin-left: 0; + margin-bottom: 0; + padding-left: 0; + list-style: none; +} +.bs-docs-social-buttons li { + display: inline-block; + padding: 5px 8px; + line-height: 1; + *display: inline; + *zoom: 1; +} + +/* Subhead (other pages) +------------------------- */ +.subhead { + text-align: left; + border-bottom: 1px solid #ddd; +} +.subhead h1 { + font-size: 60px; +} +.subhead p { + margin-bottom: 20px; +} +.subhead .navbar { + display: none; +} + + + +/* Marketing section of Overview +-------------------------------------------------- */ + +.marketing { + text-align: center; + color: #5a5a5a; +} +.marketing h1 { + margin: 60px 0 10px; + font-size: 60px; + font-weight: 200; + line-height: 1; + letter-spacing: -1px; +} +.marketing h2 { + font-weight: 200; + margin-bottom: 5px; +} +.marketing p { + font-size: 16px; + line-height: 1.5; +} +.marketing .marketing-byline { + margin-bottom: 40px; + font-size: 20px; + font-weight: 300; + line-height: 25px; + color: #999; +} +.marketing img { + display: block; + margin: 0 auto 30px; +} + + + +/* Footer +-------------------------------------------------- */ + +.footer { + padding: 70px 0; + margin-top: 70px; + border-top: 1px solid #e5e5e5; + background-color: #f5f5f5; +} +.footer p { + margin-bottom: 0; + color: #777; +} +.footer-links { + margin: 10px 0; +} +.footer-links li { + display: inline; + margin-right: 10px; +} + + + +/* Special grid styles +-------------------------------------------------- */ + +.show-grid { + margin-top: 10px; + margin-bottom: 20px; +} +.show-grid [class*="span"] { + background-color: #eee; + text-align: center; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; + min-height: 40px; + line-height: 40px; +} +.show-grid:hover [class*="span"] { + background: #ddd; +} +.show-grid .show-grid { + margin-top: 0; + margin-bottom: 0; +} +.show-grid .show-grid [class*="span"] { + background-color: #ccc; +} + + + +/* Mini layout previews +-------------------------------------------------- */ +.mini-layout { + border: 1px solid #ddd; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 1px 2px rgba(0,0,0,.075); + -moz-box-shadow: 0 1px 2px rgba(0,0,0,.075); + box-shadow: 0 1px 2px rgba(0,0,0,.075); +} +.mini-layout, +.mini-layout .mini-layout-body, +.mini-layout.fluid .mini-layout-sidebar { + height: 300px; +} +.mini-layout { + margin-bottom: 20px; + padding: 9px; +} +.mini-layout div { + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} +.mini-layout .mini-layout-body { + background-color: #dceaf4; + margin: 0 auto; + width: 70%; +} +.mini-layout.fluid .mini-layout-sidebar, +.mini-layout.fluid .mini-layout-header, +.mini-layout.fluid .mini-layout-body { + float: left; +} +.mini-layout.fluid .mini-layout-sidebar { + background-color: #bbd8e9; + width: 20%; +} +.mini-layout.fluid .mini-layout-body { + width: 77.5%; + margin-left: 2.5%; +} + + + +/* Download page +-------------------------------------------------- */ + +.download .page-header { + margin-top: 36px; +} +.page-header .toggle-all { + margin-top: 5px; +} + +/* Space out h3s when following a section */ +.download h3 { + margin-bottom: 5px; +} +.download-builder input + h3, +.download-builder .checkbox + h3 { + margin-top: 9px; +} + +/* Fields for variables */ +.download-builder input[type=text] { + margin-bottom: 9px; + font-family: Menlo, Monaco, "Courier New", monospace; + font-size: 12px; + color: #d14; +} +.download-builder input[type=text]:focus { + background-color: #fff; +} + +/* Custom, larger checkbox labels */ +.download .checkbox { + padding: 6px 10px 6px 25px; + font-size: 13px; + line-height: 18px; + color: #555; + background-color: #f9f9f9; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; + cursor: pointer; +} +.download .checkbox:hover { + color: #333; + background-color: #f5f5f5; +} +.download .checkbox small { + font-size: 12px; + color: #777; +} + +/* Variables section */ +#variables label { + margin-bottom: 0; +} + +/* Giant download button */ +.download-btn { + margin: 36px 0 108px; +} +#download p, +#download h4 { + max-width: 50%; + margin: 0 auto; + color: #999; + text-align: center; +} +#download h4 { + margin-bottom: 0; +} +#download p { + margin-bottom: 18px; +} +.download-btn .btn { + display: block; + width: auto; + padding: 19px 24px; + margin-bottom: 27px; + font-size: 30px; + line-height: 1; + text-align: center; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + + + +/* Misc +-------------------------------------------------- */ + +/* Make tables spaced out a bit more */ +h2 + table, +h3 + table, +h4 + table, +h2 + .row { + margin-top: 5px; +} + +/* Example sites showcase */ +.example-sites { + xmargin-left: 20px; +} +.example-sites img { + max-width: 100%; + margin: 0 auto; +} + +.scrollspy-example { + height: 200px; + overflow: auto; + position: relative; +} + + +/* Fake the :focus state to demo it */ +.focused { + border-color: rgba(82,168,236,.8); + -webkit-box-shadow: inset 0 1px 3px rgba(0,0,0,.1), 0 0 8px rgba(82,168,236,.6); + -moz-box-shadow: inset 0 1px 3px rgba(0,0,0,.1), 0 0 8px rgba(82,168,236,.6); + box-shadow: inset 0 1px 3px rgba(0,0,0,.1), 0 0 8px rgba(82,168,236,.6); + outline: 0; +} + +/* For input sizes, make them display block */ +.docs-input-sizes select, +.docs-input-sizes input[type=text] { + display: block; + margin-bottom: 9px; +} + +/* Icons +------------------------- */ +.the-icons { + margin-left: 0; + list-style: none; +} +.the-icons li { + float: left; + width: 25%; + line-height: 25px; +} +.the-icons i:hover { + background-color: rgba(255,0,0,.25); +} + +/* Example page +------------------------- */ +.bootstrap-examples p { + font-size: 13px; + line-height: 18px; +} +.bootstrap-examples .thumbnail { + margin-bottom: 9px; + background-color: #fff; +} + + + +/* Bootstrap code examples +-------------------------------------------------- */ + +/* Base class */ +.bs-docs-example { + position: relative; + margin: 15px 0; + padding: 39px 19px 14px; + *padding-top: 19px; + background-color: #fff; + border: 1px solid #ddd; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +/* Echo out a label for the example */ +.bs-docs-example:after { + content: "Results"; + position: absolute; + top: -1px; + left: -1px; + padding: 3px 7px; + font-size: 12px; + font-weight: bold; + background-color: #f5f5f5; + border: 1px solid #ddd; + color: #9da0a4; + -webkit-border-radius: 4px 0 4px 0; + -moz-border-radius: 4px 0 4px 0; + border-radius: 4px 0 4px 0; +} + +/* Remove spacing between an example and it's code */ +.bs-docs-example + .prettyprint { + margin-top: -20px; + padding-top: 15px; +} + +/* Tweak examples +------------------------- */ +.bs-docs-example > p:last-child { + margin-bottom: 0; +} +.bs-docs-example .table, +.bs-docs-example .progress, +.bs-docs-example .well, +.bs-docs-example .alert, +.bs-docs-example .hero-unit, +.bs-docs-example .pagination, +.bs-docs-example .navbar, +.bs-docs-example > .nav, +.bs-docs-example blockquote { + margin-bottom: 5px; +} +.bs-docs-example .pagination { + margin-top: 0; +} +.bs-navbar-top-example, +.bs-navbar-bottom-example { + z-index: 1; + padding: 0; + height: 90px; + overflow: hidden; /* cut the drop shadows off */ +} +.bs-navbar-top-example .navbar-fixed-top, +.bs-navbar-bottom-example .navbar-fixed-bottom { + margin-left: 0; + margin-right: 0; +} +.bs-navbar-top-example { + -webkit-border-radius: 0 0 4px 4px; + -moz-border-radius: 0 0 4px 4px; + border-radius: 0 0 4px 4px; +} +.bs-navbar-top-example:after { + top: auto; + bottom: -1px; + -webkit-border-radius: 0 4px 0 4px; + -moz-border-radius: 0 4px 0 4px; + border-radius: 0 4px 0 4px; +} +.bs-navbar-bottom-example { + -webkit-border-radius: 4px 4px 0 0; + -moz-border-radius: 4px 4px 0 0; + border-radius: 4px 4px 0 0; +} +.bs-navbar-bottom-example .navbar { + margin-bottom: 0; +} +form.bs-docs-example { + padding-bottom: 19px; +} + +/* Images */ +.bs-docs-example-images img { + margin: 10px; + display: inline-block; +} + +/* Tooltips */ +.bs-docs-tooltip-examples { + text-align: center; + margin: 0 0 10px; + list-style: none; +} +.bs-docs-tooltip-examples li { + display: inline; + padding: 0 10px; +} + +/* Popovers */ +.bs-docs-example-popover { + padding-bottom: 24px; + background-color: #f9f9f9; +} +.bs-docs-example-popover .popover { + position: relative; + display: block; + float: left; + width: 260px; + margin: 20px; +} + + + +/* Responsive docs +-------------------------------------------------- */ + +/* Utility classes table +------------------------- */ +.responsive-utilities th small { + display: block; + font-weight: normal; + color: #999; +} +.responsive-utilities tbody th { + font-weight: normal; +} +.responsive-utilities td { + text-align: center; +} +.responsive-utilities td.is-visible { + color: #468847; + background-color: #dff0d8 !important; +} +.responsive-utilities td.is-hidden { + color: #ccc; + background-color: #f9f9f9 !important; +} + +/* Responsive tests +------------------------- */ +.responsive-utilities-test { + margin-top: 5px; + margin-left: 0; + list-style: none; + overflow: hidden; /* clear floats */ +} +.responsive-utilities-test li { + position: relative; + float: left; + width: 25%; + height: 43px; + font-size: 14px; + font-weight: bold; + line-height: 43px; + color: #999; + text-align: center; + border: 1px solid #ddd; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} +.responsive-utilities-test li + li { + margin-left: 10px; +} +.responsive-utilities-test span { + position: absolute; + top: -1px; + left: -1px; + right: -1px; + bottom: -1px; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} +.responsive-utilities-test span { + color: #468847; + background-color: #dff0d8; + border: 1px solid #d6e9c6; +} + + + +/* Sidenav for Docs +-------------------------------------------------- */ + +.bs-docs-sidenav { + width: 228px; + margin: 30px 0 0; + padding: 0; + background-color: #fff; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 1px 4px rgba(0,0,0,.065); + -moz-box-shadow: 0 1px 4px rgba(0,0,0,.065); + box-shadow: 0 1px 4px rgba(0,0,0,.065); +} +.bs-docs-sidenav > li > a { + display: block; + *width: 190px; + margin: 0 0 -1px; + padding: 8px 14px; + border: 1px solid #e5e5e5; +} +.bs-docs-sidenav > li:first-child > a { + -webkit-border-radius: 6px 6px 0 0; + -moz-border-radius: 6px 6px 0 0; + border-radius: 6px 6px 0 0; +} +.bs-docs-sidenav > li:last-child > a { + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; +} +.bs-docs-sidenav > .active > a { + position: relative; + z-index: 2; + padding: 9px 15px; + border: 0; + text-shadow: 0 1px 0 rgba(0,0,0,.15); + -webkit-box-shadow: inset 1px 0 0 rgba(0,0,0,.1), inset -1px 0 0 rgba(0,0,0,.1); + -moz-box-shadow: inset 1px 0 0 rgba(0,0,0,.1), inset -1px 0 0 rgba(0,0,0,.1); + box-shadow: inset 1px 0 0 rgba(0,0,0,.1), inset -1px 0 0 rgba(0,0,0,.1); +} +/* Chevrons */ +.bs-docs-sidenav .icon-chevron-right { + float: right; + margin-top: 2px; + margin-right: -6px; + opacity: .25; +} +.bs-docs-sidenav > li > a:hover { + background-color: #f5f5f5; +} +.bs-docs-sidenav a:hover .icon-chevron-right { + opacity: .5; +} +.bs-docs-sidenav .active .icon-chevron-right, +.bs-docs-sidenav .active a:hover .icon-chevron-right { + background-image: url(../img/glyphicons-halflings-white.png); + opacity: 1; +} +.bs-docs-sidenav.affix { + top: 40px; +} +.bs-docs-sidenav.affix-bottom { + position: absolute; + top: auto; + bottom: 270px; +} + + + + +/* Responsive +-------------------------------------------------- */ + +/* Desktop large +------------------------- */ +@media (min-width: 1200px) { + .bs-docs-container { + max-width: 970px; + } + .bs-docs-sidenav { + width: 258px; + } +} + +/* Desktop +------------------------- */ +@media (max-width: 980px) { + /* Unfloat brand */ + body > .navbar-fixed-top .brand { + float: left; + margin-left: 0; + padding-left: 10px; + padding-right: 10px; + } + + /* Inline-block quick links for more spacing */ + .quick-links li { + display: inline-block; + margin: 5px; + } + + /* When affixed, space properly */ + .bs-docs-sidenav { + top: 0; + margin-top: 30px; + margin-right: 0; + } +} + +/* Tablet to desktop +------------------------- */ +@media (min-width: 768px) and (max-width: 980px) { + /* Remove any padding from the body */ + body { + padding-top: 0; + } + /* Widen masthead and social buttons to fill body padding */ + .jumbotron { + margin-top: -20px; /* Offset bottom margin on .navbar */ + } + /* Adjust sidenav width */ + .bs-docs-sidenav { + width: 166px; + margin-top: 20px; + } + .bs-docs-sidenav.affix { + top: 0; + } +} + +/* Tablet +------------------------- */ +@media (max-width: 767px) { + /* Remove any padding from the body */ + body { + padding-top: 0; + } + + /* Widen masthead and social buttons to fill body padding */ + .jumbotron { + padding: 40px 20px; + margin-top: -20px; /* Offset bottom margin on .navbar */ + margin-right: -20px; + margin-left: -20px; + } + .masthead h1 { + font-size: 90px; + } + .masthead p, + .masthead .btn { + font-size: 24px; + } + .marketing .span4 { + margin-bottom: 40px; + } + .bs-docs-social { + margin: 0 -20px; + } + + /* Space out the show-grid examples */ + .show-grid [class*="span"] { + margin-bottom: 5px; + } + + /* Sidenav */ + .bs-docs-sidenav { + width: auto; + margin-bottom: 20px; + } + .bs-docs-sidenav.affix { + position: static; + width: auto; + top: 0; + } + + /* Unfloat the back to top link in footer */ + .footer { + margin-left: -20px; + margin-right: -20px; + padding-left: 20px; + padding-right: 20px; + } + .footer p { + margin-bottom: 9px; + } +} + +/* Landscape phones +------------------------- */ +@media (max-width: 480px) { + /* Remove padding above jumbotron */ + body { + padding-top: 0; + } + + /* Change up some type stuff */ + h2 small { + display: block; + } + + /* Downsize the jumbotrons */ + .jumbotron h1 { + font-size: 60px; + } + .jumbotron p, + .jumbotron .btn { + font-size: 20px; + } + .jumbotron .btn { + display: block; + margin: 0 auto; + } + + /* center align subhead text like the masthead */ + .subhead h1, + .subhead p { + text-align: center; + } + + /* Marketing on home */ + .marketing h1 { + font-size: 40px; + } + + /* center example sites */ + .example-sites { + margin-left: 0; + } + .example-sites > li { + float: none; + display: block; + max-width: 280px; + margin: 0 auto 18px; + text-align: center; + } + .example-sites .thumbnail > img { + max-width: 270px; + } + + /* Do our best to make tables work in narrow viewports */ + table code { + white-space: normal; + word-wrap: break-word; + word-break: break-all; + } + + /* Modal example */ + .modal-example .modal { + position: relative; + top: auto; + right: auto; + bottom: auto; + left: auto; + } + + /* Unfloat the back to top in footer to prevent odd text wrapping */ + .footer .pull-right { + float: none; + } +} diff --git a/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings-white.png b/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings-white.png Binary files differnew file mode 100644 index 00000000..3bf6484a --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings-white.png diff --git a/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings.png b/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings.png Binary files differnew file mode 100644 index 00000000..a9969993 --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/img/glyphicons-halflings.png diff --git a/wqflask/wqflask/static/packages/bootstrap-old/js/bootstrap.js b/wqflask/wqflask/static/packages/bootstrap-old/js/bootstrap.js new file mode 100644 index 00000000..f73fcb8e --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap-old/js/bootstrap.js @@ -0,0 +1,2027 @@ +/* =================================================== + * bootstrap-transition.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#transitions + * =================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================== */ + + +!function ($) { + + $(function () { + + "use strict"; // jshint ;_; + + + /* CSS TRANSITION SUPPORT (http://www.modernizr.com/) + * ======================================================= */ + + $.support.transition = (function () { + + var transitionEnd = (function () { + + var el = document.createElement('bootstrap') + , transEndEventNames = { + 'WebkitTransition' : 'webkitTransitionEnd' + , 'MozTransition' : 'transitionend' + , 'OTransition' : 'oTransitionEnd otransitionend' + , 'transition' : 'transitionend' + } + , name + + for (name in transEndEventNames){ + if (el.style[name] !== undefined) { + return transEndEventNames[name] + } + } + + }()) + + return transitionEnd && { + end: transitionEnd + } + + })() + + }) + +}(window.jQuery);/* ========================================================== + * bootstrap-alert.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#alerts + * ========================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* ALERT CLASS DEFINITION + * ====================== */ + + var dismiss = '[data-dismiss="alert"]' + , Alert = function (el) { + $(el).on('click', dismiss, this.close) + } + + Alert.prototype.close = function (e) { + var $this = $(this) + , selector = $this.attr('data-target') + , $parent + + if (!selector) { + selector = $this.attr('href') + selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 + } + + $parent = $(selector) + + e && e.preventDefault() + + $parent.length || ($parent = $this.hasClass('alert') ? $this : $this.parent()) + + $parent.trigger(e = $.Event('close')) + + if (e.isDefaultPrevented()) return + + $parent.removeClass('in') + + function removeElement() { + $parent + .trigger('closed') + .remove() + } + + $.support.transition && $parent.hasClass('fade') ? + $parent.on($.support.transition.end, removeElement) : + removeElement() + } + + + /* ALERT PLUGIN DEFINITION + * ======================= */ + + $.fn.alert = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('alert') + if (!data) $this.data('alert', (data = new Alert(this))) + if (typeof option == 'string') data[option].call($this) + }) + } + + $.fn.alert.Constructor = Alert + + + /* ALERT DATA-API + * ============== */ + + $(function () { + $('body').on('click.alert.data-api', dismiss, Alert.prototype.close) + }) + +}(window.jQuery);/* ============================================================ + * bootstrap-button.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#buttons + * ============================================================ + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ============================================================ */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* BUTTON PUBLIC CLASS DEFINITION + * ============================== */ + + var Button = function (element, options) { + this.$element = $(element) + this.options = $.extend({}, $.fn.button.defaults, options) + } + + Button.prototype.setState = function (state) { + var d = 'disabled' + , $el = this.$element + , data = $el.data() + , val = $el.is('input') ? 'val' : 'html' + + state = state + 'Text' + data.resetText || $el.data('resetText', $el[val]()) + + $el[val](data[state] || this.options[state]) + + // push to event loop to allow forms to submit + setTimeout(function () { + state == 'loadingText' ? + $el.addClass(d).attr(d, d) : + $el.removeClass(d).removeAttr(d) + }, 0) + } + + Button.prototype.toggle = function () { + var $parent = this.$element.closest('[data-toggle="buttons-radio"]') + + $parent && $parent + .find('.active') + .removeClass('active') + + this.$element.toggleClass('active') + } + + + /* BUTTON PLUGIN DEFINITION + * ======================== */ + + $.fn.button = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('button') + , options = typeof option == 'object' && option + if (!data) $this.data('button', (data = new Button(this, options))) + if (option == 'toggle') data.toggle() + else if (option) data.setState(option) + }) + } + + $.fn.button.defaults = { + loadingText: 'loading...' + } + + $.fn.button.Constructor = Button + + + /* BUTTON DATA-API + * =============== */ + + $(function () { + $('body').on('click.button.data-api', '[data-toggle^=button]', function ( e ) { + var $btn = $(e.target) + if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn') + $btn.button('toggle') + }) + }) + +}(window.jQuery);/* ========================================================== + * bootstrap-carousel.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#carousel + * ========================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* CAROUSEL CLASS DEFINITION + * ========================= */ + + var Carousel = function (element, options) { + this.$element = $(element) + this.options = options + this.options.slide && this.slide(this.options.slide) + this.options.pause == 'hover' && this.$element + .on('mouseenter', $.proxy(this.pause, this)) + .on('mouseleave', $.proxy(this.cycle, this)) + } + + Carousel.prototype = { + + cycle: function (e) { + if (!e) this.paused = false + this.options.interval + && !this.paused + && (this.interval = setInterval($.proxy(this.next, this), this.options.interval)) + return this + } + + , to: function (pos) { + var $active = this.$element.find('.item.active') + , children = $active.parent().children() + , activePos = children.index($active) + , that = this + + if (pos > (children.length - 1) || pos < 0) return + + if (this.sliding) { + return this.$element.one('slid', function () { + that.to(pos) + }) + } + + if (activePos == pos) { + return this.pause().cycle() + } + + return this.slide(pos > activePos ? 'next' : 'prev', $(children[pos])) + } + + , pause: function (e) { + if (!e) this.paused = true + if (this.$element.find('.next, .prev').length && $.support.transition.end) { + this.$element.trigger($.support.transition.end) + this.cycle() + } + clearInterval(this.interval) + this.interval = null + return this + } + + , next: function () { + if (this.sliding) return + return this.slide('next') + } + + , prev: function () { + if (this.sliding) return + return this.slide('prev') + } + + , slide: function (type, next) { + var $active = this.$element.find('.item.active') + , $next = next || $active[type]() + , isCycling = this.interval + , direction = type == 'next' ? 'left' : 'right' + , fallback = type == 'next' ? 'first' : 'last' + , that = this + , e = $.Event('slide', { + relatedTarget: $next[0] + }) + + this.sliding = true + + isCycling && this.pause() + + $next = $next.length ? $next : this.$element.find('.item')[fallback]() + + if ($next.hasClass('active')) return + + if ($.support.transition && this.$element.hasClass('slide')) { + this.$element.trigger(e) + if (e.isDefaultPrevented()) return + $next.addClass(type) + $next[0].offsetWidth // force reflow + $active.addClass(direction) + $next.addClass(direction) + this.$element.one($.support.transition.end, function () { + $next.removeClass([type, direction].join(' ')).addClass('active') + $active.removeClass(['active', direction].join(' ')) + that.sliding = false + setTimeout(function () { that.$element.trigger('slid') }, 0) + }) + } else { + this.$element.trigger(e) + if (e.isDefaultPrevented()) return + $active.removeClass('active') + $next.addClass('active') + this.sliding = false + this.$element.trigger('slid') + } + + isCycling && this.cycle() + + return this + } + + } + + + /* CAROUSEL PLUGIN DEFINITION + * ========================== */ + + $.fn.carousel = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('carousel') + , options = $.extend({}, $.fn.carousel.defaults, typeof option == 'object' && option) + , action = typeof option == 'string' ? option : options.slide + if (!data) $this.data('carousel', (data = new Carousel(this, options))) + if (typeof option == 'number') data.to(option) + else if (action) data[action]() + else if (options.interval) data.cycle() + }) + } + + $.fn.carousel.defaults = { + interval: 5000 + , pause: 'hover' + } + + $.fn.carousel.Constructor = Carousel + + + /* CAROUSEL DATA-API + * ================= */ + + $(function () { + $('body').on('click.carousel.data-api', '[data-slide]', function ( e ) { + var $this = $(this), href + , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 + , options = !$target.data('modal') && $.extend({}, $target.data(), $this.data()) + $target.carousel(options) + e.preventDefault() + }) + }) + +}(window.jQuery);/* ============================================================= + * bootstrap-collapse.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#collapse + * ============================================================= + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ============================================================ */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* COLLAPSE PUBLIC CLASS DEFINITION + * ================================ */ + + var Collapse = function (element, options) { + this.$element = $(element) + this.options = $.extend({}, $.fn.collapse.defaults, options) + + if (this.options.parent) { + this.$parent = $(this.options.parent) + } + + this.options.toggle && this.toggle() + } + + Collapse.prototype = { + + constructor: Collapse + + , dimension: function () { + var hasWidth = this.$element.hasClass('width') + return hasWidth ? 'width' : 'height' + } + + , show: function () { + var dimension + , scroll + , actives + , hasData + + if (this.transitioning) return + + dimension = this.dimension() + scroll = $.camelCase(['scroll', dimension].join('-')) + actives = this.$parent && this.$parent.find('> .accordion-group > .in') + + if (actives && actives.length) { + hasData = actives.data('collapse') + if (hasData && hasData.transitioning) return + actives.collapse('hide') + hasData || actives.data('collapse', null) + } + + this.$element[dimension](0) + this.transition('addClass', $.Event('show'), 'shown') + $.support.transition && this.$element[dimension](this.$element[0][scroll]) + } + + , hide: function () { + var dimension + if (this.transitioning) return + dimension = this.dimension() + this.reset(this.$element[dimension]()) + this.transition('removeClass', $.Event('hide'), 'hidden') + this.$element[dimension](0) + } + + , reset: function (size) { + var dimension = this.dimension() + + this.$element + .removeClass('collapse') + [dimension](size || 'auto') + [0].offsetWidth + + this.$element[size !== null ? 'addClass' : 'removeClass']('collapse') + + return this + } + + , transition: function (method, startEvent, completeEvent) { + var that = this + , complete = function () { + if (startEvent.type == 'show') that.reset() + that.transitioning = 0 + that.$element.trigger(completeEvent) + } + + this.$element.trigger(startEvent) + + if (startEvent.isDefaultPrevented()) return + + this.transitioning = 1 + + this.$element[method]('in') + + $.support.transition && this.$element.hasClass('collapse') ? + this.$element.one($.support.transition.end, complete) : + complete() + } + + , toggle: function () { + this[this.$element.hasClass('in') ? 'hide' : 'show']() + } + + } + + + /* COLLAPSIBLE PLUGIN DEFINITION + * ============================== */ + + $.fn.collapse = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('collapse') + , options = typeof option == 'object' && option + if (!data) $this.data('collapse', (data = new Collapse(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.collapse.defaults = { + toggle: true + } + + $.fn.collapse.Constructor = Collapse + + + /* COLLAPSIBLE DATA-API + * ==================== */ + + $(function () { + $('body').on('click.collapse.data-api', '[data-toggle=collapse]', function (e) { + var $this = $(this), href + , target = $this.attr('data-target') + || e.preventDefault() + || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7 + , option = $(target).data('collapse') ? 'toggle' : $this.data() + $this[$(target).hasClass('in') ? 'addClass' : 'removeClass']('collapsed') + $(target).collapse(option) + }) + }) + +}(window.jQuery);/* ============================================================ + * bootstrap-dropdown.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#dropdowns + * ============================================================ + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ============================================================ */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* DROPDOWN CLASS DEFINITION + * ========================= */ + + var toggle = '[data-toggle=dropdown]' + , Dropdown = function (element) { + var $el = $(element).on('click.dropdown.data-api', this.toggle) + $('html').on('click.dropdown.data-api', function () { + $el.parent().removeClass('open') + }) + } + + Dropdown.prototype = { + + constructor: Dropdown + + , toggle: function (e) { + var $this = $(this) + , $parent + , isActive + + if ($this.is('.disabled, :disabled')) return + + $parent = getParent($this) + + isActive = $parent.hasClass('open') + + clearMenus() + + if (!isActive) { + $parent.toggleClass('open') + $this.focus() + } + + return false + } + + , keydown: function (e) { + var $this + , $items + , $active + , $parent + , isActive + , index + + if (!/(38|40|27)/.test(e.keyCode)) return + + $this = $(this) + + e.preventDefault() + e.stopPropagation() + + if ($this.is('.disabled, :disabled')) return + + $parent = getParent($this) + + isActive = $parent.hasClass('open') + + if (!isActive || (isActive && e.keyCode == 27)) return $this.click() + + $items = $('[role=menu] li:not(.divider) a', $parent) + + if (!$items.length) return + + index = $items.index($items.filter(':focus')) + + if (e.keyCode == 38 && index > 0) index-- // up + if (e.keyCode == 40 && index < $items.length - 1) index++ // down + if (!~index) index = 0 + + $items + .eq(index) + .focus() + } + + } + + function clearMenus() { + getParent($(toggle)) + .removeClass('open') + } + + function getParent($this) { + var selector = $this.attr('data-target') + , $parent + + if (!selector) { + selector = $this.attr('href') + selector = selector && /#/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 + } + + $parent = $(selector) + $parent.length || ($parent = $this.parent()) + + return $parent + } + + + /* DROPDOWN PLUGIN DEFINITION + * ========================== */ + + $.fn.dropdown = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('dropdown') + if (!data) $this.data('dropdown', (data = new Dropdown(this))) + if (typeof option == 'string') data[option].call($this) + }) + } + + $.fn.dropdown.Constructor = Dropdown + + + /* APPLY TO STANDARD DROPDOWN ELEMENTS + * =================================== */ + + $(function () { + $('html') + .on('click.dropdown.data-api touchstart.dropdown.data-api', clearMenus) + $('body') + .on('click.dropdown touchstart.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() }) + .on('click.dropdown.data-api touchstart.dropdown.data-api' , toggle, Dropdown.prototype.toggle) + .on('keydown.dropdown.data-api touchstart.dropdown.data-api', toggle + ', [role=menu]' , Dropdown.prototype.keydown) + }) + +}(window.jQuery);/* ========================================================= + * bootstrap-modal.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#modals + * ========================================================= + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================= */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* MODAL CLASS DEFINITION + * ====================== */ + + var Modal = function (element, options) { + this.options = options + this.$element = $(element) + .delegate('[data-dismiss="modal"]', 'click.dismiss.modal', $.proxy(this.hide, this)) + this.options.remote && this.$element.find('.modal-body').load(this.options.remote) + } + + Modal.prototype = { + + constructor: Modal + + , toggle: function () { + return this[!this.isShown ? 'show' : 'hide']() + } + + , show: function () { + var that = this + , e = $.Event('show') + + this.$element.trigger(e) + + if (this.isShown || e.isDefaultPrevented()) return + + $('body').addClass('modal-open') + + this.isShown = true + + this.escape() + + this.backdrop(function () { + var transition = $.support.transition && that.$element.hasClass('fade') + + if (!that.$element.parent().length) { + that.$element.appendTo(document.body) //don't move modals dom position + } + + that.$element + .show() + + if (transition) { + that.$element[0].offsetWidth // force reflow + } + + that.$element + .addClass('in') + .attr('aria-hidden', false) + .focus() + + that.enforceFocus() + + transition ? + that.$element.one($.support.transition.end, function () { that.$element.trigger('shown') }) : + that.$element.trigger('shown') + + }) + } + + , hide: function (e) { + e && e.preventDefault() + + var that = this + + e = $.Event('hide') + + this.$element.trigger(e) + + if (!this.isShown || e.isDefaultPrevented()) return + + this.isShown = false + + $('body').removeClass('modal-open') + + this.escape() + + $(document).off('focusin.modal') + + this.$element + .removeClass('in') + .attr('aria-hidden', true) + + $.support.transition && this.$element.hasClass('fade') ? + this.hideWithTransition() : + this.hideModal() + } + + , enforceFocus: function () { + var that = this + $(document).on('focusin.modal', function (e) { + if (that.$element[0] !== e.target && !that.$element.has(e.target).length) { + that.$element.focus() + } + }) + } + + , escape: function () { + var that = this + if (this.isShown && this.options.keyboard) { + this.$element.on('keyup.dismiss.modal', function ( e ) { + e.which == 27 && that.hide() + }) + } else if (!this.isShown) { + this.$element.off('keyup.dismiss.modal') + } + } + + , hideWithTransition: function () { + var that = this + , timeout = setTimeout(function () { + that.$element.off($.support.transition.end) + that.hideModal() + }, 500) + + this.$element.one($.support.transition.end, function () { + clearTimeout(timeout) + that.hideModal() + }) + } + + , hideModal: function (that) { + this.$element + .hide() + .trigger('hidden') + + this.backdrop() + } + + , removeBackdrop: function () { + this.$backdrop.remove() + this.$backdrop = null + } + + , backdrop: function (callback) { + var that = this + , animate = this.$element.hasClass('fade') ? 'fade' : '' + + if (this.isShown && this.options.backdrop) { + var doAnimate = $.support.transition && animate + + this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />') + .appendTo(document.body) + + if (this.options.backdrop != 'static') { + this.$backdrop.click($.proxy(this.hide, this)) + } + + if (doAnimate) this.$backdrop[0].offsetWidth // force reflow + + this.$backdrop.addClass('in') + + doAnimate ? + this.$backdrop.one($.support.transition.end, callback) : + callback() + + } else if (!this.isShown && this.$backdrop) { + this.$backdrop.removeClass('in') + + $.support.transition && this.$element.hasClass('fade')? + this.$backdrop.one($.support.transition.end, $.proxy(this.removeBackdrop, this)) : + this.removeBackdrop() + + } else if (callback) { + callback() + } + } + } + + + /* MODAL PLUGIN DEFINITION + * ======================= */ + + $.fn.modal = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('modal') + , options = $.extend({}, $.fn.modal.defaults, $this.data(), typeof option == 'object' && option) + if (!data) $this.data('modal', (data = new Modal(this, options))) + if (typeof option == 'string') data[option]() + else if (options.show) data.show() + }) + } + + $.fn.modal.defaults = { + backdrop: true + , keyboard: true + , show: true + } + + $.fn.modal.Constructor = Modal + + + /* MODAL DATA-API + * ============== */ + + $(function () { + $('body').on('click.modal.data-api', '[data-toggle="modal"]', function ( e ) { + var $this = $(this) + , href = $this.attr('href') + , $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7 + , option = $target.data('modal') ? 'toggle' : $.extend({ remote: !/#/.test(href) && href }, $target.data(), $this.data()) + + e.preventDefault() + + $target + .modal(option) + .one('hide', function () { + $this.focus() + }) + }) + }) + +}(window.jQuery);/* =========================================================== + * bootstrap-tooltip.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#tooltips + * Inspired by the original jQuery.tipsy by Jason Frame + * =========================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* TOOLTIP PUBLIC CLASS DEFINITION + * =============================== */ + + var Tooltip = function (element, options) { + this.init('tooltip', element, options) + } + + Tooltip.prototype = { + + constructor: Tooltip + + , init: function (type, element, options) { + var eventIn + , eventOut + + this.type = type + this.$element = $(element) + this.options = this.getOptions(options) + this.enabled = true + + if (this.options.trigger == 'click') { + this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) + } else if (this.options.trigger != 'manual') { + eventIn = this.options.trigger == 'hover' ? 'mouseenter' : 'focus' + eventOut = this.options.trigger == 'hover' ? 'mouseleave' : 'blur' + this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) + this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) + } + + this.options.selector ? + (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) : + this.fixTitle() + } + + , getOptions: function (options) { + options = $.extend({}, $.fn[this.type].defaults, options, this.$element.data()) + + if (options.delay && typeof options.delay == 'number') { + options.delay = { + show: options.delay + , hide: options.delay + } + } + + return options + } + + , enter: function (e) { + var self = $(e.currentTarget)[this.type](this._options).data(this.type) + + if (!self.options.delay || !self.options.delay.show) return self.show() + + clearTimeout(this.timeout) + self.hoverState = 'in' + this.timeout = setTimeout(function() { + if (self.hoverState == 'in') self.show() + }, self.options.delay.show) + } + + , leave: function (e) { + var self = $(e.currentTarget)[this.type](this._options).data(this.type) + + if (this.timeout) clearTimeout(this.timeout) + if (!self.options.delay || !self.options.delay.hide) return self.hide() + + self.hoverState = 'out' + this.timeout = setTimeout(function() { + if (self.hoverState == 'out') self.hide() + }, self.options.delay.hide) + } + + , show: function () { + var $tip + , inside + , pos + , actualWidth + , actualHeight + , placement + , tp + + if (this.hasContent() && this.enabled) { + $tip = this.tip() + this.setContent() + + if (this.options.animation) { + $tip.addClass('fade') + } + + placement = typeof this.options.placement == 'function' ? + this.options.placement.call(this, $tip[0], this.$element[0]) : + this.options.placement + + inside = /in/.test(placement) + + $tip + .remove() + .css({ top: 0, left: 0, display: 'block' }) + .appendTo(inside ? this.$element : document.body) + + pos = this.getPosition(inside) + + actualWidth = $tip[0].offsetWidth + actualHeight = $tip[0].offsetHeight + + switch (inside ? placement.split(' ')[1] : placement) { + case 'bottom': + tp = {top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2} + break + case 'top': + tp = {top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2} + break + case 'left': + tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth} + break + case 'right': + tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width} + break + } + + $tip + .css(tp) + .addClass(placement) + .addClass('in') + } + } + + , setContent: function () { + var $tip = this.tip() + , title = this.getTitle() + + $tip.find('.tooltip-inner')[this.options.html ? 'html' : 'text'](title) + $tip.removeClass('fade in top bottom left right') + } + + , hide: function () { + var that = this + , $tip = this.tip() + + $tip.removeClass('in') + + function removeWithAnimation() { + var timeout = setTimeout(function () { + $tip.off($.support.transition.end).remove() + }, 500) + + $tip.one($.support.transition.end, function () { + clearTimeout(timeout) + $tip.remove() + }) + } + + $.support.transition && this.$tip.hasClass('fade') ? + removeWithAnimation() : + $tip.remove() + + return this + } + + , fixTitle: function () { + var $e = this.$element + if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') { + $e.attr('data-original-title', $e.attr('title') || '').removeAttr('title') + } + } + + , hasContent: function () { + return this.getTitle() + } + + , getPosition: function (inside) { + return $.extend({}, (inside ? {top: 0, left: 0} : this.$element.offset()), { + width: this.$element[0].offsetWidth + , height: this.$element[0].offsetHeight + }) + } + + , getTitle: function () { + var title + , $e = this.$element + , o = this.options + + title = $e.attr('data-original-title') + || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title) + + return title + } + + , tip: function () { + return this.$tip = this.$tip || $(this.options.template) + } + + , validate: function () { + if (!this.$element[0].parentNode) { + this.hide() + this.$element = null + this.options = null + } + } + + , enable: function () { + this.enabled = true + } + + , disable: function () { + this.enabled = false + } + + , toggleEnabled: function () { + this.enabled = !this.enabled + } + + , toggle: function () { + this[this.tip().hasClass('in') ? 'hide' : 'show']() + } + + , destroy: function () { + this.hide().$element.off('.' + this.type).removeData(this.type) + } + + } + + + /* TOOLTIP PLUGIN DEFINITION + * ========================= */ + + $.fn.tooltip = function ( option ) { + return this.each(function () { + var $this = $(this) + , data = $this.data('tooltip') + , options = typeof option == 'object' && option + if (!data) $this.data('tooltip', (data = new Tooltip(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.tooltip.Constructor = Tooltip + + $.fn.tooltip.defaults = { + animation: true + , placement: 'top' + , selector: false + , template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>' + , trigger: 'hover' + , title: '' + , delay: 0 + , html: true + } + +}(window.jQuery); +/* =========================================================== + * bootstrap-popover.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#popovers + * =========================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * =========================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* POPOVER PUBLIC CLASS DEFINITION + * =============================== */ + + var Popover = function (element, options) { + this.init('popover', element, options) + } + + + /* NOTE: POPOVER EXTENDS BOOTSTRAP-TOOLTIP.js + ========================================== */ + + Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype, { + + constructor: Popover + + , setContent: function () { + var $tip = this.tip() + , title = this.getTitle() + , content = this.getContent() + + $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title) + $tip.find('.popover-content > *')[this.options.html ? 'html' : 'text'](content) + + $tip.removeClass('fade top bottom left right in') + } + + , hasContent: function () { + return this.getTitle() || this.getContent() + } + + , getContent: function () { + var content + , $e = this.$element + , o = this.options + + content = $e.attr('data-content') + || (typeof o.content == 'function' ? o.content.call($e[0]) : o.content) + + return content + } + + , tip: function () { + if (!this.$tip) { + this.$tip = $(this.options.template) + } + return this.$tip + } + + , destroy: function () { + this.hide().$element.off('.' + this.type).removeData(this.type) + } + + }) + + + /* POPOVER PLUGIN DEFINITION + * ======================= */ + + $.fn.popover = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('popover') + , options = typeof option == 'object' && option + if (!data) $this.data('popover', (data = new Popover(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.popover.Constructor = Popover + + $.fn.popover.defaults = $.extend({} , $.fn.tooltip.defaults, { + placement: 'right' + , trigger: 'click' + , content: '' + , template: '<div class="popover"><div class="arrow"></div><div class="popover-inner"><h3 class="popover-title"></h3><div class="popover-content"><p></p></div></div></div>' + }) + +}(window.jQuery);/* ============================================================= + * bootstrap-scrollspy.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#scrollspy + * ============================================================= + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ============================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* SCROLLSPY CLASS DEFINITION + * ========================== */ + + function ScrollSpy(element, options) { + var process = $.proxy(this.process, this) + , $element = $(element).is('body') ? $(window) : $(element) + , href + this.options = $.extend({}, $.fn.scrollspy.defaults, options) + this.$scrollElement = $element.on('scroll.scroll-spy.data-api', process) + this.selector = (this.options.target + || ((href = $(element).attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 + || '') + ' .nav li > a' + this.$body = $('body') + this.refresh() + this.process() + } + + ScrollSpy.prototype = { + + constructor: ScrollSpy + + , refresh: function () { + var self = this + , $targets + + this.offsets = $([]) + this.targets = $([]) + + $targets = this.$body + .find(this.selector) + .map(function () { + var $el = $(this) + , href = $el.data('target') || $el.attr('href') + , $href = /^#\w/.test(href) && $(href) + return ( $href + && $href.length + && [[ $href.position().top, href ]] ) || null + }) + .sort(function (a, b) { return a[0] - b[0] }) + .each(function () { + self.offsets.push(this[0]) + self.targets.push(this[1]) + }) + } + + , process: function () { + var scrollTop = this.$scrollElement.scrollTop() + this.options.offset + , scrollHeight = this.$scrollElement[0].scrollHeight || this.$body[0].scrollHeight + , maxScroll = scrollHeight - this.$scrollElement.height() + , offsets = this.offsets + , targets = this.targets + , activeTarget = this.activeTarget + , i + + if (scrollTop >= maxScroll) { + return activeTarget != (i = targets.last()[0]) + && this.activate ( i ) + } + + for (i = offsets.length; i--;) { + activeTarget != targets[i] + && scrollTop >= offsets[i] + && (!offsets[i + 1] || scrollTop <= offsets[i + 1]) + && this.activate( targets[i] ) + } + } + + , activate: function (target) { + var active + , selector + + this.activeTarget = target + + $(this.selector) + .parent('.active') + .removeClass('active') + + selector = this.selector + + '[data-target="' + target + '"],' + + this.selector + '[href="' + target + '"]' + + active = $(selector) + .parent('li') + .addClass('active') + + if (active.parent('.dropdown-menu').length) { + active = active.closest('li.dropdown').addClass('active') + } + + active.trigger('activate') + } + + } + + + /* SCROLLSPY PLUGIN DEFINITION + * =========================== */ + + $.fn.scrollspy = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('scrollspy') + , options = typeof option == 'object' && option + if (!data) $this.data('scrollspy', (data = new ScrollSpy(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.scrollspy.Constructor = ScrollSpy + + $.fn.scrollspy.defaults = { + offset: 10 + } + + + /* SCROLLSPY DATA-API + * ================== */ + + $(window).on('load', function () { + $('[data-spy="scroll"]').each(function () { + var $spy = $(this) + $spy.scrollspy($spy.data()) + }) + }) + +}(window.jQuery);/* ======================================================== + * bootstrap-tab.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#tabs + * ======================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ======================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* TAB CLASS DEFINITION + * ==================== */ + + var Tab = function (element) { + this.element = $(element) + } + + Tab.prototype = { + + constructor: Tab + + , show: function () { + var $this = this.element + , $ul = $this.closest('ul:not(.dropdown-menu)') + , selector = $this.attr('data-target') + , previous + , $target + , e + + if (!selector) { + selector = $this.attr('href') + selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 + } + + if ( $this.parent('li').hasClass('active') ) return + + previous = $ul.find('.active a').last()[0] + + e = $.Event('show', { + relatedTarget: previous + }) + + $this.trigger(e) + + if (e.isDefaultPrevented()) return + + $target = $(selector) + + this.activate($this.parent('li'), $ul) + this.activate($target, $target.parent(), function () { + $this.trigger({ + type: 'shown' + , relatedTarget: previous + }) + }) + } + + , activate: function ( element, container, callback) { + var $active = container.find('> .active') + , transition = callback + && $.support.transition + && $active.hasClass('fade') + + function next() { + $active + .removeClass('active') + .find('> .dropdown-menu > .active') + .removeClass('active') + + element.addClass('active') + + if (transition) { + element[0].offsetWidth // reflow for transition + element.addClass('in') + } else { + element.removeClass('fade') + } + + if ( element.parent('.dropdown-menu') ) { + element.closest('li.dropdown').addClass('active') + } + + callback && callback() + } + + transition ? + $active.one($.support.transition.end, next) : + next() + + $active.removeClass('in') + } + } + + + /* TAB PLUGIN DEFINITION + * ===================== */ + + $.fn.tab = function ( option ) { + return this.each(function () { + var $this = $(this) + , data = $this.data('tab') + if (!data) $this.data('tab', (data = new Tab(this))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.tab.Constructor = Tab + + + /* TAB DATA-API + * ============ */ + + $(function () { + $('body').on('click.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) { + e.preventDefault() + $(this).tab('show') + }) + }) + +}(window.jQuery);/* ============================================================= + * bootstrap-typeahead.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#typeahead + * ============================================================= + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ============================================================ */ + + +!function($){ + + "use strict"; // jshint ;_; + + + /* TYPEAHEAD PUBLIC CLASS DEFINITION + * ================================= */ + + var Typeahead = function (element, options) { + this.$element = $(element) + this.options = $.extend({}, $.fn.typeahead.defaults, options) + this.matcher = this.options.matcher || this.matcher + this.sorter = this.options.sorter || this.sorter + this.highlighter = this.options.highlighter || this.highlighter + this.updater = this.options.updater || this.updater + this.$menu = $(this.options.menu).appendTo('body') + this.source = this.options.source + this.shown = false + this.listen() + } + + Typeahead.prototype = { + + constructor: Typeahead + + , select: function () { + var val = this.$menu.find('.active').attr('data-value') + this.$element + .val(this.updater(val)) + .change() + return this.hide() + } + + , updater: function (item) { + return item + } + + , show: function () { + var pos = $.extend({}, this.$element.offset(), { + height: this.$element[0].offsetHeight + }) + + this.$menu.css({ + top: pos.top + pos.height + , left: pos.left + }) + + this.$menu.show() + this.shown = true + return this + } + + , hide: function () { + this.$menu.hide() + this.shown = false + return this + } + + , lookup: function (event) { + var items + + this.query = this.$element.val() + + if (!this.query || this.query.length < this.options.minLength) { + return this.shown ? this.hide() : this + } + + items = $.isFunction(this.source) ? this.source(this.query, $.proxy(this.process, this)) : this.source + + return items ? this.process(items) : this + } + + , process: function (items) { + var that = this + + items = $.grep(items, function (item) { + return that.matcher(item) + }) + + items = this.sorter(items) + + if (!items.length) { + return this.shown ? this.hide() : this + } + + return this.render(items.slice(0, this.options.items)).show() + } + + , matcher: function (item) { + return ~item.toLowerCase().indexOf(this.query.toLowerCase()) + } + + , sorter: function (items) { + var beginswith = [] + , caseSensitive = [] + , caseInsensitive = [] + , item + + while (item = items.shift()) { + if (!item.toLowerCase().indexOf(this.query.toLowerCase())) beginswith.push(item) + else if (~item.indexOf(this.query)) caseSensitive.push(item) + else caseInsensitive.push(item) + } + + return beginswith.concat(caseSensitive, caseInsensitive) + } + + , highlighter: function (item) { + var query = this.query.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g, '\\$&') + return item.replace(new RegExp('(' + query + ')', 'ig'), function ($1, match) { + return '<strong>' + match + '</strong>' + }) + } + + , render: function (items) { + var that = this + + items = $(items).map(function (i, item) { + i = $(that.options.item).attr('data-value', item) + i.find('a').html(that.highlighter(item)) + return i[0] + }) + + items.first().addClass('active') + this.$menu.html(items) + return this + } + + , next: function (event) { + var active = this.$menu.find('.active').removeClass('active') + , next = active.next() + + if (!next.length) { + next = $(this.$menu.find('li')[0]) + } + + next.addClass('active') + } + + , prev: function (event) { + var active = this.$menu.find('.active').removeClass('active') + , prev = active.prev() + + if (!prev.length) { + prev = this.$menu.find('li').last() + } + + prev.addClass('active') + } + + , listen: function () { + this.$element + .on('blur', $.proxy(this.blur, this)) + .on('keypress', $.proxy(this.keypress, this)) + .on('keyup', $.proxy(this.keyup, this)) + + if ($.browser.chrome || $.browser.webkit || $.browser.msie) { + this.$element.on('keydown', $.proxy(this.keydown, this)) + } + + this.$menu + .on('click', $.proxy(this.click, this)) + .on('mouseenter', 'li', $.proxy(this.mouseenter, this)) + } + + , move: function (e) { + if (!this.shown) return + + switch(e.keyCode) { + case 9: // tab + case 13: // enter + case 27: // escape + e.preventDefault() + break + + case 38: // up arrow + e.preventDefault() + this.prev() + break + + case 40: // down arrow + e.preventDefault() + this.next() + break + } + + e.stopPropagation() + } + + , keydown: function (e) { + this.suppressKeyPressRepeat = !~$.inArray(e.keyCode, [40,38,9,13,27]) + this.move(e) + } + + , keypress: function (e) { + if (this.suppressKeyPressRepeat) return + this.move(e) + } + + , keyup: function (e) { + switch(e.keyCode) { + case 40: // down arrow + case 38: // up arrow + break + + case 9: // tab + case 13: // enter + if (!this.shown) return + this.select() + break + + case 27: // escape + if (!this.shown) return + this.hide() + break + + default: + this.lookup() + } + + e.stopPropagation() + e.preventDefault() + } + + , blur: function (e) { + var that = this + setTimeout(function () { that.hide() }, 150) + } + + , click: function (e) { + e.stopPropagation() + e.preventDefault() + this.select() + } + + , mouseenter: function (e) { + this.$menu.find('.active').removeClass('active') + $(e.currentTarget).addClass('active') + } + + } + + + /* TYPEAHEAD PLUGIN DEFINITION + * =========================== */ + + $.fn.typeahead = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('typeahead') + , options = typeof option == 'object' && option + if (!data) $this.data('typeahead', (data = new Typeahead(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.typeahead.defaults = { + source: [] + , items: 8 + , menu: '<ul class="typeahead dropdown-menu"></ul>' + , item: '<li><a href="#"></a></li>' + , minLength: 1 + } + + $.fn.typeahead.Constructor = Typeahead + + + /* TYPEAHEAD DATA-API + * ================== */ + + $(function () { + $('body').on('focus.typeahead.data-api', '[data-provide="typeahead"]', function (e) { + var $this = $(this) + if ($this.data('typeahead')) return + e.preventDefault() + $this.typeahead($this.data()) + }) + }) + +}(window.jQuery); +/* ========================================================== + * bootstrap-affix.js v2.1.1 + * http://twitter.github.com/bootstrap/javascript.html#affix + * ========================================================== + * Copyright 2012 Twitter, Inc. + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * ========================================================== */ + + +!function ($) { + + "use strict"; // jshint ;_; + + + /* AFFIX CLASS DEFINITION + * ====================== */ + + var Affix = function (element, options) { + this.options = $.extend({}, $.fn.affix.defaults, options) + this.$window = $(window).on('scroll.affix.data-api', $.proxy(this.checkPosition, this)) + this.$element = $(element) + this.checkPosition() + } + + Affix.prototype.checkPosition = function () { + if (!this.$element.is(':visible')) return + + var scrollHeight = $(document).height() + , scrollTop = this.$window.scrollTop() + , position = this.$element.offset() + , offset = this.options.offset + , offsetBottom = offset.bottom + , offsetTop = offset.top + , reset = 'affix affix-top affix-bottom' + , affix + + if (typeof offset != 'object') offsetBottom = offsetTop = offset + if (typeof offsetTop == 'function') offsetTop = offset.top() + 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'-' + affix : '')) + } + + + /* AFFIX PLUGIN DEFINITION + * ======================= */ + + $.fn.affix = function (option) { + return this.each(function () { + var $this = $(this) + , data = $this.data('affix') + , options = typeof option == 'object' && option + if (!data) $this.data('affix', (data = new Affix(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + $.fn.affix.Constructor = Affix + + $.fn.affix.defaults = { + offset: 0 + } + + + /* AFFIX DATA-API + * ============== */ + + $(window).on('load', function () { + $('[data-spy="affix"]').each(function () { + var $spy = $(this) + , data = $spy.data() + + data.offset = data.offset || {} + + data.offsetBottom && (data.offset.bottom = data.offsetBottom) + data.offsetTop && (data.offset.top = data.offsetTop) + + $spy.affix(data) + }) + }) + + +}(window.jQuery);
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\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.css b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.css index 9259d26d..fcd72f7a 100644 --- a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.css +++ b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.css @@ -1,5 +1,5 @@ /*! - * Bootstrap Responsive v2.1.1 + * Bootstrap Responsive v2.3.1 * * Copyright 2012 Twitter, Inc * Licensed under the Apache License v2.0 @@ -40,6 +40,10 @@ box-sizing: border-box; } +@-ms-viewport { + width: device-width; +} + .hidden { display: none; visibility: hidden; @@ -91,6 +95,19 @@ } } +.visible-print { + display: none !important; +} + +@media print { + .visible-print { + display: inherit !important; + } + .hidden-print { + display: none !important; + } +} + @media (min-width: 1200px) { .row { margin-left: -30px; @@ -215,6 +232,9 @@ .row-fluid [class*="span"]:first-child { margin-left: 0; } + .row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.564102564102564%; + } .row-fluid .span12 { width: 100%; *width: 99.94680851063829%; @@ -562,6 +582,9 @@ .row-fluid [class*="span"]:first-child { margin-left: 0; } + .row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.7624309392265194%; + } .row-fluid .span12 { width: 100%; *width: 99.94680851063829%; @@ -814,6 +837,7 @@ margin-left: 0; } [class*="span"], + .uneditable-input[class*="span"], .row-fluid [class*="span"] { display: block; float: none; @@ -830,6 +854,9 @@ -moz-box-sizing: border-box; box-sizing: border-box; } + .row-fluid [class*="offset"]:first-child { + margin-left: 0; + } .input-large, .input-xlarge, .input-xxlarge, @@ -862,8 +889,11 @@ width: auto; margin: 0; } + .modal.fade { + top: -100px; + } .modal.fade.in { - top: auto; + top: 20px; } } @@ -895,6 +925,16 @@ padding-right: 10px; padding-left: 10px; } + .media .pull-left, + .media .pull-right { + display: block; + float: none; + margin-bottom: 10px; + } + .media-object { + margin-right: 0; + margin-left: 0; + } .modal { top: 10px; right: 10px; @@ -976,11 +1016,19 @@ margin-bottom: 2px; } .nav-collapse .nav > li > a:hover, - .nav-collapse .dropdown-menu a:hover { + .nav-collapse .nav > li > a:focus, + .nav-collapse .dropdown-menu a:hover, + .nav-collapse .dropdown-menu a:focus { background-color: #f2f2f2; } + .navbar-inverse .nav-collapse .nav > li > a, + .navbar-inverse .nav-collapse .dropdown-menu a { + color: #999999; + } .navbar-inverse .nav-collapse .nav > li > a:hover, - .navbar-inverse .nav-collapse .dropdown-menu a:hover { + .navbar-inverse .nav-collapse .nav > li > a:focus, + .navbar-inverse .nav-collapse .dropdown-menu a:hover, + .navbar-inverse .nav-collapse .dropdown-menu a:focus { background-color: #111111; } .nav-collapse.in .btn-group { @@ -991,7 +1039,7 @@ position: static; top: auto; left: auto; - display: block; + display: none; float: none; max-width: none; padding: 0; @@ -1005,6 +1053,9 @@ -moz-box-shadow: none; box-shadow: none; } + .nav-collapse .open > .dropdown-menu { + display: block; + } .nav-collapse .dropdown-menu:before, .nav-collapse .dropdown-menu:after { display: none; diff --git a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.min.css b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.min.css index 7b0158da..d1b7f4b0 100644 --- a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.min.css +++ b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap-responsive.min.css @@ -1,9 +1,9 @@ /*! - * Bootstrap Responsive v2.1.1 + * Bootstrap Responsive v2.3.1 * * Copyright 2012 Twitter, Inc * Licensed under the Apache License v2.0 * http://www.apache.org/licenses/LICENSE-2.0 * * Designed and built with all the love in the world @twitter by @mdo and @fat. - */.clearfix{*zoom:1}.clearfix:before,.clearfix:after{display:table;line-height:0;content:""}.clearfix:after{clear:both}.hide-text{font:0/0 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.navbar-inner{padding-right:10px;padding-left:10px}}@media(min-width:980px){.nav-collapse.collapse{height:auto!important;overflow:visible!important}} diff --git a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css index 9fa6f766..2f56af33 100644 --- a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css +++ b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css @@ -1,5 +1,5 @@ /*! - * Bootstrap v2.1.1 + * Bootstrap v2.3.1 * * Copyright 2012 Twitter, Inc * Licensed under the Apache License v2.0 @@ -8,6 +8,38 @@ * Designed and built with all the love in the world @twitter by @mdo and @fat. */ +.clearfix { + *zoom: 1; +} + +.clearfix:before, +.clearfix:after { + display: table; + line-height: 0; + content: ""; +} + +.clearfix:after { + clear: both; +} + +.hide-text { + font: 0/0 a; + color: transparent; + text-shadow: none; + background-color: transparent; + border: 0; +} + +.input-block-level { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + article, aside, details, @@ -75,7 +107,8 @@ img { -ms-interpolation-mode: bicubic; } -#map_canvas img { +#map_canvas img, +.google-maps img { max-width: none; } @@ -101,13 +134,24 @@ input::-moz-focus-inner { } button, -input[type="button"], +html input[type="button"], input[type="reset"], input[type="submit"] { cursor: pointer; -webkit-appearance: button; } +label, +select, +button, +input[type="button"], +input[type="reset"], +input[type="submit"], +input[type="radio"], +input[type="checkbox"] { + cursor: pointer; +} + input[type="search"] { -webkit-box-sizing: content-box; -moz-box-sizing: content-box; @@ -125,36 +169,56 @@ textarea { vertical-align: top; } -.clearfix { - *zoom: 1; -} - -.clearfix:before, -.clearfix:after { - display: table; - line-height: 0; - content: ""; -} - -.clearfix:after { - clear: both; -} - -.hide-text { - font: 0/0 a; - color: transparent; - text-shadow: none; - background-color: transparent; - border: 0; -} - -.input-block-level { - display: block; - width: 100%; - min-height: 30px; - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; +@media print { + * { + color: #000 !important; + text-shadow: none !important; + background: transparent !important; + box-shadow: none !important; + } + a, + a:visited { + text-decoration: underline; + } + a[href]:after { + content: " (" attr(href) ")"; + } + abbr[title]:after { + content: " (" attr(title) ")"; + } + .ir a:after, + a[href^="javascript:"]:after, + a[href^="#"]:after { + content: ""; + } + pre, + blockquote { + border: 1px solid #999; + page-break-inside: avoid; + } + thead { + display: table-header-group; + } + tr, + img { + page-break-inside: avoid; + } + img { + max-width: 100% !important; + } + @page { + margin: 0.5cm; + } + p, + h2, + h3 { + orphans: 3; + widows: 3; + } + h2, + h3 { + page-break-after: avoid; + } } body { @@ -171,7 +235,8 @@ a { text-decoration: none; } -a:hover { +a:hover, +a:focus { color: #005580; text-decoration: underline; } @@ -355,6 +420,10 @@ a:hover { margin-left: 0; } +.row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.127659574468085%; +} + .row-fluid .span12 { width: 100%; *width: 99.94680851063829%; @@ -610,22 +679,59 @@ cite { color: #999999; } +a.muted:hover, +a.muted:focus { + color: #808080; +} + .text-warning { color: #c09853; } +a.text-warning:hover, +a.text-warning:focus { + color: #a47e3c; +} + .text-error { color: #b94a48; } +a.text-error:hover, +a.text-error:focus { + color: #953b39; +} + .text-info { color: #3a87ad; } +a.text-info:hover, +a.text-info:focus { + color: #2d6987; +} + .text-success { color: #468847; } +a.text-success:hover, +a.text-success:focus { + color: #356635; +} + +.text-left { + text-align: left; +} + +.text-right { + text-align: right; +} + +.text-center { + text-align: center; +} + h1, h2, h3, @@ -635,7 +741,7 @@ h6 { margin: 10px 0; font-family: inherit; font-weight: bold; - line-height: 1; + line-height: 20px; color: inherit; text-rendering: optimizelegibility; } @@ -651,42 +757,42 @@ h6 small { color: #999999; } -h1 { - font-size: 36px; +h1, +h2, +h3 { line-height: 40px; } +h1 { + font-size: 38.5px; +} + h2 { - font-size: 30px; - line-height: 40px; + font-size: 31.5px; } h3 { - font-size: 24px; - line-height: 40px; + font-size: 24.5px; } h4 { - font-size: 18px; - line-height: 20px; + font-size: 17.5px; } h5 { font-size: 14px; - line-height: 20px; } h6 { - font-size: 12px; - line-height: 20px; + font-size: 11.9px; } h1 small { - font-size: 24px; + font-size: 24.5px; } h2 small { - font-size: 18px; + font-size: 17.5px; } h3 small { @@ -726,6 +832,21 @@ ol.unstyled { list-style: none; } +ul.inline, +ol.inline { + margin-left: 0; + list-style: none; +} + +ul.inline > li, +ol.inline > li { + display: inline-block; + *display: inline; + padding-right: 5px; + padding-left: 5px; + *zoom: 1; +} + dl { margin-bottom: 20px; } @@ -779,7 +900,8 @@ hr { border-bottom: 1px solid #ffffff; } -abbr[title] { +abbr[title], +abbr[data-original-title] { cursor: help; border-bottom: 1px dotted #999999; } @@ -797,9 +919,9 @@ blockquote { blockquote p { margin-bottom: 0; - font-size: 16px; + font-size: 17.5px; font-weight: 300; - line-height: 25px; + line-height: 1.25; } blockquote small { @@ -861,6 +983,7 @@ pre { code { padding: 2px 4px; color: #d14; + white-space: nowrap; background-color: #f7f7f9; border: 1px solid #e1e1e8; } @@ -890,6 +1013,8 @@ pre.prettyprint { pre code { padding: 0; color: inherit; + white-space: pre; + white-space: pre-wrap; background-color: transparent; border: 0; } @@ -968,13 +1093,14 @@ input[type="color"], display: inline-block; height: 20px; padding: 4px 6px; - margin-bottom: 9px; + margin-bottom: 10px; font-size: 14px; line-height: 20px; color: #555555; - -webkit-border-radius: 3px; - -moz-border-radius: 3px; - border-radius: 3px; + vertical-align: middle; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; } input, @@ -1046,7 +1172,6 @@ input[type="checkbox"] { margin-top: 1px \9; *margin-top: 0; line-height: normal; - cursor: pointer; } input[type="file"], @@ -1128,14 +1253,14 @@ textarea::-webkit-input-placeholder { .radio, .checkbox { - min-height: 18px; - padding-left: 18px; + min-height: 20px; + padding-left: 20px; } .radio input[type="radio"], .checkbox input[type="checkbox"] { float: left; - margin-left: -18px; + margin-left: -20px; } .controls > .radio:first-child, @@ -1302,10 +1427,16 @@ textarea.span1, clear: both; } -.controls-row [class*="span"] { +.controls-row [class*="span"], +.row-fluid .controls-row [class*="span"] { float: left; } +.controls-row .checkbox[class*="span"], +.controls-row .radio[class*="span"] { + padding-top: 5px; +} + input[disabled], select[disabled], textarea[disabled], @@ -1323,7 +1454,7 @@ input[type="checkbox"][readonly] { background-color: transparent; } -.control-group.warning > label, +.control-group.warning .control-label, .control-group.warning .help-block, .control-group.warning .help-inline { color: #c09853; @@ -1362,7 +1493,7 @@ input[type="checkbox"][readonly] { border-color: #c09853; } -.control-group.error > label, +.control-group.error .control-label, .control-group.error .help-block, .control-group.error .help-inline { color: #b94a48; @@ -1401,7 +1532,7 @@ input[type="checkbox"][readonly] { border-color: #b94a48; } -.control-group.success > label, +.control-group.success .control-label, .control-group.success .help-block, .control-group.success .help-inline { color: #468847; @@ -1440,7 +1571,7 @@ input[type="checkbox"][readonly] { border-color: #468847; } -.control-group.info > label, +.control-group.info .control-label, .control-group.info .help-block, .control-group.info .help-inline { color: #3a87ad; @@ -1479,16 +1610,16 @@ input[type="checkbox"][readonly] { border-color: #3a87ad; } -input:focus:required:invalid, -textarea:focus:required:invalid, -select:focus:required:invalid { +input:focus:invalid, +textarea:focus:invalid, +select:focus:invalid { color: #b94a48; border-color: #ee5f5b; } -input:focus:required:invalid:focus, -textarea:focus:required:invalid:focus, -select:focus:required:invalid:focus { +input:focus:invalid:focus, +textarea:focus:invalid:focus, +select:focus:invalid:focus { border-color: #e9322d; -webkit-box-shadow: 0 0 6px #f8b9b7; -moz-box-shadow: 0 0 6px #f8b9b7; @@ -1535,9 +1666,24 @@ select:focus:required:invalid:focus { .input-append, .input-prepend { - margin-bottom: 5px; + display: inline-block; + margin-bottom: 10px; font-size: 0; white-space: nowrap; + vertical-align: middle; +} + +.input-append input, +.input-prepend input, +.input-append select, +.input-prepend select, +.input-append .uneditable-input, +.input-prepend .uneditable-input, +.input-append .dropdown-menu, +.input-prepend .dropdown-menu, +.input-append .popover, +.input-prepend .popover { + font-size: 14px; } .input-append input, @@ -1549,11 +1695,10 @@ select:focus:required:invalid:focus { position: relative; margin-bottom: 0; *margin-left: 0; - font-size: 14px; vertical-align: top; - -webkit-border-radius: 0 3px 3px 0; - -moz-border-radius: 0 3px 3px 0; - border-radius: 0 3px 3px 0; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; } .input-append input:focus, @@ -1584,7 +1729,9 @@ select:focus:required:invalid:focus { .input-append .add-on, .input-prepend .add-on, .input-append .btn, -.input-prepend .btn { +.input-prepend .btn, +.input-append .btn-group > .dropdown-toggle, +.input-prepend .btn-group > .dropdown-toggle { vertical-align: top; -webkit-border-radius: 0; -moz-border-radius: 0; @@ -1604,29 +1751,39 @@ select:focus:required:invalid:focus { .input-prepend .add-on:first-child, .input-prepend .btn:first-child { - -webkit-border-radius: 3px 0 0 3px; - -moz-border-radius: 3px 0 0 3px; - border-radius: 3px 0 0 3px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; } .input-append input, .input-append select, .input-append .uneditable-input { - -webkit-border-radius: 3px 0 0 3px; - -moz-border-radius: 3px 0 0 3px; - border-radius: 3px 0 0 3px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.input-append input + .btn-group .btn:last-child, +.input-append select + .btn-group .btn:last-child, +.input-append .uneditable-input + .btn-group .btn:last-child { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; } .input-append .add-on, -.input-append .btn { +.input-append .btn, +.input-append .btn-group { margin-left: -1px; } .input-append .add-on:last-child, -.input-append .btn:last-child { - -webkit-border-radius: 0 3px 3px 0; - -moz-border-radius: 0 3px 3px 0; - border-radius: 0 3px 3px 0; +.input-append .btn:last-child, +.input-append .btn-group:last-child > .dropdown-toggle { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; } .input-prepend.input-append input, @@ -1637,20 +1794,32 @@ select:focus:required:invalid:focus { border-radius: 0; } +.input-prepend.input-append input + .btn-group .btn, +.input-prepend.input-append select + .btn-group .btn, +.input-prepend.input-append .uneditable-input + .btn-group .btn { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + .input-prepend.input-append .add-on:first-child, .input-prepend.input-append .btn:first-child { margin-right: -1px; - -webkit-border-radius: 3px 0 0 3px; - -moz-border-radius: 3px 0 0 3px; - border-radius: 3px 0 0 3px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; } .input-prepend.input-append .add-on:last-child, .input-prepend.input-append .btn:last-child { margin-left: -1px; - -webkit-border-radius: 0 3px 3px 0; - -moz-border-radius: 0 3px 3px 0; - border-radius: 0 3px 3px 0; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-prepend.input-append .btn-group:first-child { + margin-left: 0; } input.search-query { @@ -1814,7 +1983,10 @@ legend + .control-group { .form-horizontal input + .help-block, .form-horizontal select + .help-block, -.form-horizontal textarea + .help-block { +.form-horizontal textarea + .help-block, +.form-horizontal .uneditable-input + .help-block, +.form-horizontal .input-prepend + .help-block, +.form-horizontal .input-append + .help-block { margin-top: 10px; } @@ -1864,6 +2036,10 @@ table { border-top: 2px solid #dddddd; } +.table .table { + background-color: #ffffff; +} + .table-condensed th, .table-condensed td { padding: 4px 5px; @@ -1896,39 +2072,54 @@ table { border-top: 0; } -.table-bordered thead:first-child tr:first-child th:first-child, -.table-bordered tbody:first-child tr:first-child td:first-child { +.table-bordered thead:first-child tr:first-child > th:first-child, +.table-bordered tbody:first-child tr:first-child > td:first-child, +.table-bordered tbody:first-child tr:first-child > th:first-child { -webkit-border-top-left-radius: 4px; border-top-left-radius: 4px; -moz-border-radius-topleft: 4px; } -.table-bordered thead:first-child tr:first-child th:last-child, -.table-bordered tbody:first-child tr:first-child td:last-child { +.table-bordered thead:first-child tr:first-child > th:last-child, +.table-bordered tbody:first-child tr:first-child > td:last-child, +.table-bordered tbody:first-child tr:first-child > th:last-child { -webkit-border-top-right-radius: 4px; border-top-right-radius: 4px; -moz-border-radius-topright: 4px; } -.table-bordered thead:last-child tr:last-child th:first-child, -.table-bordered tbody:last-child tr:last-child td:first-child, -.table-bordered tfoot:last-child tr:last-child td:first-child { - -webkit-border-radius: 0 0 0 4px; - -moz-border-radius: 0 0 0 4px; - border-radius: 0 0 0 4px; +.table-bordered thead:last-child tr:last-child > th:first-child, +.table-bordered tbody:last-child tr:last-child > td:first-child, +.table-bordered tbody:last-child tr:last-child > th:first-child, +.table-bordered tfoot:last-child tr:last-child > td:first-child, +.table-bordered tfoot:last-child tr:last-child > th:first-child { -webkit-border-bottom-left-radius: 4px; border-bottom-left-radius: 4px; -moz-border-radius-bottomleft: 4px; } -.table-bordered thead:last-child tr:last-child th:last-child, -.table-bordered tbody:last-child tr:last-child td:last-child, -.table-bordered tfoot:last-child tr:last-child td:last-child { +.table-bordered thead:last-child tr:last-child > th:last-child, +.table-bordered tbody:last-child tr:last-child > td:last-child, +.table-bordered tbody:last-child tr:last-child > th:last-child, +.table-bordered tfoot:last-child tr:last-child > td:last-child, +.table-bordered tfoot:last-child tr:last-child > th:last-child { -webkit-border-bottom-right-radius: 4px; border-bottom-right-radius: 4px; -moz-border-radius-bottomright: 4px; } +.table-bordered tfoot + tbody:last-child tr:last-child td:first-child { + -webkit-border-bottom-left-radius: 0; + border-bottom-left-radius: 0; + -moz-border-radius-bottomleft: 0; +} + +.table-bordered tfoot + tbody:last-child tr:last-child td:last-child { + -webkit-border-bottom-right-radius: 0; + border-bottom-right-radius: 0; + -moz-border-radius-bottomright: 0; +} + .table-bordered caption + thead tr:first-child th:first-child, .table-bordered caption + tbody tr:first-child td:first-child, .table-bordered colgroup + thead tr:first-child th:first-child, @@ -1944,199 +2135,141 @@ table { .table-bordered colgroup + tbody tr:first-child td:last-child { -webkit-border-top-right-radius: 4px; border-top-right-radius: 4px; - -moz-border-radius-topleft: 4px; + -moz-border-radius-topright: 4px; } -.table-striped tbody tr:nth-child(odd) td, -.table-striped tbody tr:nth-child(odd) th { +.table-striped tbody > tr:nth-child(odd) > td, +.table-striped tbody > tr:nth-child(odd) > th { background-color: #f9f9f9; } -.table-hover tbody tr:hover td, -.table-hover tbody tr:hover th { +.table-hover tbody tr:hover > td, +.table-hover tbody tr:hover > th { background-color: #f5f5f5; } -table [class*=span], -.row-fluid table [class*=span] { +table td[class*="span"], +table th[class*="span"], +.row-fluid table td[class*="span"], +.row-fluid table th[class*="span"] { display: table-cell; float: none; margin-left: 0; } -.table .span1 { +.table td.span1, +.table th.span1 { float: none; width: 44px; margin-left: 0; } -.table .span2 { +.table td.span2, +.table th.span2 { float: none; width: 124px; margin-left: 0; } -.table .span3 { +.table td.span3, +.table th.span3 { float: none; width: 204px; margin-left: 0; } -.table .span4 { +.table td.span4, +.table th.span4 { float: none; width: 284px; margin-left: 0; } -.table .span5 { +.table td.span5, +.table th.span5 { float: none; width: 364px; margin-left: 0; } -.table .span6 { +.table td.span6, +.table th.span6 { float: none; width: 444px; margin-left: 0; } -.table .span7 { +.table td.span7, +.table th.span7 { float: none; width: 524px; margin-left: 0; } -.table .span8 { +.table td.span8, +.table th.span8 { float: none; width: 604px; margin-left: 0; } -.table .span9 { +.table td.span9, +.table th.span9 { float: none; width: 684px; margin-left: 0; } -.table .span10 { +.table td.span10, +.table th.span10 { float: none; width: 764px; margin-left: 0; } -.table .span11 { +.table td.span11, +.table th.span11 { float: none; width: 844px; margin-left: 0; } -.table .span12 { +.table td.span12, +.table th.span12 { float: none; width: 924px; margin-left: 0; } -.table .span13 { - float: none; - width: 1004px; - margin-left: 0; -} - -.table .span14 { - float: none; - width: 1084px; - margin-left: 0; -} - -.table .span15 { - float: none; - width: 1164px; - margin-left: 0; -} - -.table .span16 { - float: none; - width: 1244px; - margin-left: 0; -} - -.table .span17 { - float: none; - width: 1324px; - margin-left: 0; -} - -.table .span18 { - float: none; - width: 1404px; - margin-left: 0; -} - -.table .span19 { - float: none; - width: 1484px; - margin-left: 0; -} - -.table .span20 { - float: none; - width: 1564px; - margin-left: 0; -} - -.table .span21 { - float: none; - width: 1644px; - margin-left: 0; -} - -.table .span22 { - float: none; - width: 1724px; - margin-left: 0; -} - -.table .span23 { - float: none; - width: 1804px; - margin-left: 0; -} - -.table .span24 { - float: none; - width: 1884px; - margin-left: 0; -} - -.table tbody tr.success td { +.table tbody tr.success > td { background-color: #dff0d8; } -.table tbody tr.error td { +.table tbody tr.error > td { background-color: #f2dede; } -.table tbody tr.warning td { +.table tbody tr.warning > td { background-color: #fcf8e3; } -.table tbody tr.info td { +.table tbody tr.info > td { background-color: #d9edf7; } -.table-hover tbody tr.success:hover td { +.table-hover tbody tr.success:hover > td { background-color: #d0e9c6; } -.table-hover tbody tr.error:hover td { +.table-hover tbody tr.error:hover > td { background-color: #ebcccc; } -.table-hover tbody tr.warning:hover td { +.table-hover tbody tr.warning:hover > td { background-color: #faf2cc; } -.table-hover tbody tr.info:hover td { +.table-hover tbody tr.info:hover > td { background-color: #c4e3f3; } @@ -2154,11 +2287,9 @@ table [class*=span], background-repeat: no-repeat; } -/* White icons with optional class, or on hover/active states of certain elements */ +/* White icons with optional class, or on hover/focus/active states of certain elements */ .icon-white, -.nav-tabs > .active > a > [class^="icon-"], -.nav-tabs > .active > a > [class*=" icon-"], .nav-pills > .active > a > [class^="icon-"], .nav-pills > .active > a > [class*=" icon-"], .nav-list > .active > a > [class^="icon-"], @@ -2166,9 +2297,15 @@ table [class*=span], .navbar-inverse .nav > .active > a > [class^="icon-"], .navbar-inverse .nav > .active > a > [class*=" icon-"], .dropdown-menu > li > a:hover > [class^="icon-"], +.dropdown-menu > li > a:focus > [class^="icon-"], .dropdown-menu > li > a:hover > [class*=" icon-"], +.dropdown-menu > li > a:focus > [class*=" icon-"], .dropdown-menu > .active > a > [class^="icon-"], -.dropdown-menu > .active > a > [class*=" icon-"] { +.dropdown-menu > .active > a > [class*=" icon-"], +.dropdown-submenu:hover > a > [class^="icon-"], +.dropdown-submenu:focus > a > [class^="icon-"], +.dropdown-submenu:hover > a > [class*=" icon-"], +.dropdown-submenu:focus > a > [class*=" icon-"] { background-image: url("../img/glyphicons-halflings-white.png"); } @@ -2638,6 +2775,7 @@ table [class*=span], } .icon-folder-close { + width: 16px; background-position: -384px -120px; } @@ -2806,7 +2944,7 @@ table [class*=span], border-bottom: 1px solid #ffffff; } -.dropdown-menu a { +.dropdown-menu > li > a { display: block; padding: 3px 20px; clear: both; @@ -2816,12 +2954,12 @@ table [class*=span], white-space: nowrap; } -.dropdown-menu li > a:hover, -.dropdown-menu li > a:focus, -.dropdown-submenu:hover > a { +.dropdown-menu > li > a:hover, +.dropdown-menu > li > a:focus, +.dropdown-submenu:hover > a, +.dropdown-submenu:focus > a { color: #ffffff; text-decoration: none; - background-color: #0088cc; background-color: #0081c2; background-image: -moz-linear-gradient(top, #0088cc, #0077b3); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); @@ -2829,34 +2967,38 @@ table [class*=span], background-image: -o-linear-gradient(top, #0088cc, #0077b3); background-image: linear-gradient(to bottom, #0088cc, #0077b3); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); } -.dropdown-menu .active > a, -.dropdown-menu .active > a:hover { +.dropdown-menu > .active > a, +.dropdown-menu > .active > a:hover, +.dropdown-menu > .active > a:focus { color: #ffffff; text-decoration: none; - background-color: #0088cc; background-color: #0081c2; - background-image: linear-gradient(to bottom, #0088cc, #0077b3); background-image: -moz-linear-gradient(top, #0088cc, #0077b3); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); background-image: -o-linear-gradient(top, #0088cc, #0077b3); + background-image: linear-gradient(to bottom, #0088cc, #0077b3); background-repeat: repeat-x; outline: 0; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); } -.dropdown-menu .disabled > a, -.dropdown-menu .disabled > a:hover { +.dropdown-menu > .disabled > a, +.dropdown-menu > .disabled > a:hover, +.dropdown-menu > .disabled > a:focus { color: #999999; } -.dropdown-menu .disabled > a:hover { +.dropdown-menu > .disabled > a:hover, +.dropdown-menu > .disabled > a:focus { text-decoration: none; cursor: default; background-color: transparent; + background-image: none; + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .open { @@ -2904,6 +3046,16 @@ table [class*=span], display: block; } +.dropup .dropdown-submenu > .dropdown-menu { + top: auto; + bottom: 0; + margin-top: 0; + margin-bottom: -2px; + -webkit-border-radius: 5px 5px 5px 0; + -moz-border-radius: 5px 5px 5px 0; + border-radius: 5px 5px 5px 0; +} + .dropdown-submenu > a:after { display: block; float: right; @@ -2922,12 +3074,25 @@ table [class*=span], border-left-color: #ffffff; } +.dropdown-submenu.pull-left { + float: none; +} + +.dropdown-submenu.pull-left > .dropdown-menu { + left: -100%; + margin-left: 10px; + -webkit-border-radius: 6px 0 6px 6px; + -moz-border-radius: 6px 0 6px 6px; + border-radius: 6px 0 6px 6px; +} + .dropdown .dropdown-menu .nav-header { padding-right: 20px; padding-left: 20px; } .typeahead { + z-index: 1051; margin-top: 2px; -webkit-border-radius: 4px; -moz-border-radius: 4px; @@ -3004,7 +3169,8 @@ table [class*=span], filter: alpha(opacity=20); } -.close:hover { +.close:hover, +.close:focus { color: #000000; text-decoration: none; cursor: pointer; @@ -3023,12 +3189,11 @@ button.close { .btn { display: inline-block; *display: inline; - padding: 4px 14px; + padding: 4px 12px; margin-bottom: 0; *margin-left: .3em; font-size: 14px; line-height: 20px; - *line-height: 20px; color: #333333; text-align: center; text-shadow: 0 1px 1px rgba(255, 255, 255, 0.75); @@ -3036,22 +3201,22 @@ button.close { cursor: pointer; background-color: #f5f5f5; *background-color: #e6e6e6; + background-image: -moz-linear-gradient(top, #ffffff, #e6e6e6); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#e6e6e6)); background-image: -webkit-linear-gradient(top, #ffffff, #e6e6e6); background-image: -o-linear-gradient(top, #ffffff, #e6e6e6); background-image: linear-gradient(to bottom, #ffffff, #e6e6e6); - background-image: -moz-linear-gradient(top, #ffffff, #e6e6e6); background-repeat: repeat-x; - border: 1px solid #bbbbbb; + border: 1px solid #cccccc; *border: 0; - border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); border-color: #e6e6e6 #e6e6e6 #bfbfbf; - border-bottom-color: #a2a2a2; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + border-bottom-color: #b3b3b3; -webkit-border-radius: 4px; -moz-border-radius: 4px; border-radius: 4px; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); *zoom: 1; -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); @@ -3059,6 +3224,7 @@ button.close { } .btn:hover, +.btn:focus, .btn:active, .btn.active, .btn.disabled, @@ -3077,13 +3243,10 @@ button.close { *margin-left: 0; } -.btn:hover { +.btn:hover, +.btn:focus { color: #333333; text-decoration: none; - background-color: #e6e6e6; - *background-color: #d9d9d9; - /* Buttons in IE7 don't get borders, so darken on hover */ - background-position: 0 -15px; -webkit-transition: background-position 0.1s linear; -moz-transition: background-position 0.1s linear; @@ -3099,8 +3262,6 @@ button.close { .btn.active, .btn:active { - background-color: #e6e6e6; - background-color: #d9d9d9 \9; background-image: none; outline: 0; -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); @@ -3111,7 +3272,6 @@ button.close { .btn.disabled, .btn[disabled] { cursor: default; - background-color: #e6e6e6; background-image: none; opacity: 0.65; filter: alpha(opacity=65); @@ -3121,32 +3281,42 @@ button.close { } .btn-large { - padding: 9px 14px; - font-size: 16px; - line-height: normal; - -webkit-border-radius: 5px; - -moz-border-radius: 5px; - border-radius: 5px; + padding: 11px 19px; + font-size: 17.5px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; } -.btn-large [class^="icon-"] { - margin-top: 2px; +.btn-large [class^="icon-"], +.btn-large [class*=" icon-"] { + margin-top: 4px; } .btn-small { - padding: 3px 9px; - font-size: 12px; - line-height: 18px; + padding: 2px 10px; + font-size: 11.9px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; } -.btn-small [class^="icon-"] { +.btn-small [class^="icon-"], +.btn-small [class*=" icon-"] { margin-top: 0; } +.btn-mini [class^="icon-"], +.btn-mini [class*=" icon-"] { + margin-top: -1px; +} + .btn-mini { - padding: 2px 6px; - font-size: 11px; - line-height: 17px; + padding: 0 6px; + font-size: 10.5px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; } .btn-block { @@ -3178,29 +3348,25 @@ input[type="button"].btn-block { color: rgba(255, 255, 255, 0.75); } -.btn { - border-color: #c5c5c5; - border-color: rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.25); -} - .btn-primary { color: #ffffff; text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #006dcc; *background-color: #0044cc; + background-image: -moz-linear-gradient(top, #0088cc, #0044cc); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0044cc)); background-image: -webkit-linear-gradient(top, #0088cc, #0044cc); background-image: -o-linear-gradient(top, #0088cc, #0044cc); background-image: linear-gradient(to bottom, #0088cc, #0044cc); - background-image: -moz-linear-gradient(top, #0088cc, #0044cc); background-repeat: repeat-x; border-color: #0044cc #0044cc #002a80; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0044cc', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0044cc', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-primary:hover, +.btn-primary:focus, .btn-primary:active, .btn-primary.active, .btn-primary.disabled, @@ -3220,19 +3386,20 @@ input[type="button"].btn-block { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #faa732; *background-color: #f89406; + background-image: -moz-linear-gradient(top, #fbb450, #f89406); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); background-image: -webkit-linear-gradient(top, #fbb450, #f89406); background-image: -o-linear-gradient(top, #fbb450, #f89406); background-image: linear-gradient(to bottom, #fbb450, #f89406); - background-image: -moz-linear-gradient(top, #fbb450, #f89406); background-repeat: repeat-x; border-color: #f89406 #f89406 #ad6704; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-warning:hover, +.btn-warning:focus, .btn-warning:active, .btn-warning.active, .btn-warning.disabled, @@ -3252,19 +3419,20 @@ input[type="button"].btn-block { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #da4f49; *background-color: #bd362f; + background-image: -moz-linear-gradient(top, #ee5f5b, #bd362f); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ee5f5b), to(#bd362f)); background-image: -webkit-linear-gradient(top, #ee5f5b, #bd362f); background-image: -o-linear-gradient(top, #ee5f5b, #bd362f); background-image: linear-gradient(to bottom, #ee5f5b, #bd362f); - background-image: -moz-linear-gradient(top, #ee5f5b, #bd362f); background-repeat: repeat-x; border-color: #bd362f #bd362f #802420; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffbd362f', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffbd362f', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-danger:hover, +.btn-danger:focus, .btn-danger:active, .btn-danger.active, .btn-danger.disabled, @@ -3284,19 +3452,20 @@ input[type="button"].btn-block { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #5bb75b; *background-color: #51a351; + background-image: -moz-linear-gradient(top, #62c462, #51a351); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#62c462), to(#51a351)); background-image: -webkit-linear-gradient(top, #62c462, #51a351); background-image: -o-linear-gradient(top, #62c462, #51a351); background-image: linear-gradient(to bottom, #62c462, #51a351); - background-image: -moz-linear-gradient(top, #62c462, #51a351); background-repeat: repeat-x; border-color: #51a351 #51a351 #387038; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff51a351', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff51a351', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-success:hover, +.btn-success:focus, .btn-success:active, .btn-success.active, .btn-success.disabled, @@ -3316,19 +3485,20 @@ input[type="button"].btn-block { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #49afcd; *background-color: #2f96b4; + background-image: -moz-linear-gradient(top, #5bc0de, #2f96b4); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#5bc0de), to(#2f96b4)); background-image: -webkit-linear-gradient(top, #5bc0de, #2f96b4); background-image: -o-linear-gradient(top, #5bc0de, #2f96b4); background-image: linear-gradient(to bottom, #5bc0de, #2f96b4); - background-image: -moz-linear-gradient(top, #5bc0de, #2f96b4); background-repeat: repeat-x; border-color: #2f96b4 #2f96b4 #1f6377; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2f96b4', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2f96b4', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-info:hover, +.btn-info:focus, .btn-info:active, .btn-info.active, .btn-info.disabled, @@ -3348,19 +3518,20 @@ input[type="button"].btn-block { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #363636; *background-color: #222222; + background-image: -moz-linear-gradient(top, #444444, #222222); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#444444), to(#222222)); background-image: -webkit-linear-gradient(top, #444444, #222222); background-image: -o-linear-gradient(top, #444444, #222222); background-image: linear-gradient(to bottom, #444444, #222222); - background-image: -moz-linear-gradient(top, #444444, #222222); background-repeat: repeat-x; border-color: #222222 #222222 #000000; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff444444', endColorstr='#ff222222', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff444444', endColorstr='#ff222222', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .btn-inverse:hover, +.btn-inverse:focus, .btn-inverse:active, .btn-inverse.active, .btn-inverse.disabled, @@ -3424,23 +3595,28 @@ input[type="submit"].btn.btn-mini { border-radius: 0; } -.btn-link:hover { +.btn-link:hover, +.btn-link:focus { color: #005580; text-decoration: underline; background-color: transparent; } -.btn-link[disabled]:hover { +.btn-link[disabled]:hover, +.btn-link[disabled]:focus { color: #333333; text-decoration: none; } .btn-group { position: relative; + display: inline-block; + *display: inline; *margin-left: .3em; font-size: 0; white-space: nowrap; vertical-align: middle; + *zoom: 1; } .btn-group:first-child { @@ -3457,17 +3633,9 @@ input[type="submit"].btn.btn-mini { font-size: 0; } -.btn-toolbar .btn-group { - display: inline-block; - *display: inline; - /* IE7 inline-block hack */ - - *zoom: 1; -} - -.btn-toolbar .btn + .btn, -.btn-toolbar .btn-group + .btn, -.btn-toolbar .btn + .btn-group { +.btn-toolbar > .btn + .btn, +.btn-toolbar > .btn-group + .btn, +.btn-toolbar > .btn + .btn-group { margin-left: 5px; } @@ -3483,20 +3651,21 @@ input[type="submit"].btn.btn-mini { } .btn-group > .btn, -.btn-group > .dropdown-menu { +.btn-group > .dropdown-menu, +.btn-group > .popover { font-size: 14px; } .btn-group > .btn-mini { - font-size: 11px; + font-size: 10.5px; } .btn-group > .btn-small { - font-size: 12px; + font-size: 11.9px; } .btn-group > .btn-large { - font-size: 16px; + font-size: 17.5px; } .btn-group > .btn:first-child { @@ -3620,8 +3789,6 @@ input[type="submit"].btn.btn-mini { margin-left: 0; } -.btn-mini .caret, -.btn-small .caret, .btn-large .caret { margin-top: 6px; } @@ -3632,9 +3799,13 @@ input[type="submit"].btn.btn-mini { border-left-width: 5px; } +.btn-mini .caret, +.btn-small .caret { + margin-top: 8px; +} + .dropup .btn-large .caret { - border-top: 0; - border-bottom: 5px solid #000000; + border-bottom-width: 5px; } .btn-primary .caret, @@ -3655,39 +3826,39 @@ input[type="submit"].btn.btn-mini { *zoom: 1; } -.btn-group-vertical .btn { +.btn-group-vertical > .btn { display: block; float: none; - width: 100%; + max-width: 100%; -webkit-border-radius: 0; -moz-border-radius: 0; border-radius: 0; } -.btn-group-vertical .btn + .btn { +.btn-group-vertical > .btn + .btn { margin-top: -1px; margin-left: 0; } -.btn-group-vertical .btn:first-child { +.btn-group-vertical > .btn:first-child { -webkit-border-radius: 4px 4px 0 0; -moz-border-radius: 4px 4px 0 0; border-radius: 4px 4px 0 0; } -.btn-group-vertical .btn:last-child { +.btn-group-vertical > .btn:last-child { -webkit-border-radius: 0 0 4px 4px; -moz-border-radius: 0 0 4px 4px; border-radius: 0 0 4px 4px; } -.btn-group-vertical .btn-large:first-child { +.btn-group-vertical > .btn-large:first-child { -webkit-border-radius: 6px 6px 0 0; -moz-border-radius: 6px 6px 0 0; border-radius: 6px 6px 0 0; } -.btn-group-vertical .btn-large:last-child { +.btn-group-vertical > .btn-large:last-child { -webkit-border-radius: 0 0 6px 6px; -moz-border-radius: 0 0 6px 6px; border-radius: 0 0 6px 6px; @@ -3696,7 +3867,6 @@ input[type="submit"].btn.btn-mini { .alert { padding: 8px 35px 8px 14px; margin-bottom: 20px; - color: #c09853; text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); background-color: #fcf8e3; border: 1px solid #fbeed5; @@ -3705,6 +3875,11 @@ input[type="submit"].btn.btn-mini { border-radius: 4px; } +.alert, +.alert h4 { + color: #c09853; +} + .alert h4 { margin: 0; } @@ -3722,6 +3897,10 @@ input[type="submit"].btn.btn-mini { border-color: #d6e9c6; } +.alert-success h4 { + color: #468847; +} + .alert-danger, .alert-error { color: #b94a48; @@ -3729,12 +3908,21 @@ input[type="submit"].btn.btn-mini { border-color: #eed3d7; } +.alert-danger h4, +.alert-error h4 { + color: #b94a48; +} + .alert-info { color: #3a87ad; background-color: #d9edf7; border-color: #bce8f1; } +.alert-info h4 { + color: #3a87ad; +} + .alert-block { padding-top: 14px; padding-bottom: 14px; @@ -3759,11 +3947,16 @@ input[type="submit"].btn.btn-mini { display: block; } -.nav > li > a:hover { +.nav > li > a:hover, +.nav > li > a:focus { text-decoration: none; background-color: #eeeeee; } +.nav > li > a > img { + max-width: none; +} + .nav > .pull-right { float: right; } @@ -3801,13 +3994,15 @@ input[type="submit"].btn.btn-mini { } .nav-list > .active > a, -.nav-list > .active > a:hover { +.nav-list > .active > a:hover, +.nav-list > .active > a:focus { color: #ffffff; text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.2); background-color: #0088cc; } -.nav-list [class^="icon-"] { +.nav-list [class^="icon-"], +.nav-list [class*=" icon-"] { margin-right: 2px; } @@ -3871,12 +4066,14 @@ input[type="submit"].btn.btn-mini { border-radius: 4px 4px 0 0; } -.nav-tabs > li > a:hover { +.nav-tabs > li > a:hover, +.nav-tabs > li > a:focus { border-color: #eeeeee #eeeeee #dddddd; } .nav-tabs > .active > a, -.nav-tabs > .active > a:hover { +.nav-tabs > .active > a:hover, +.nav-tabs > .active > a:focus { color: #555555; cursor: default; background-color: #ffffff; @@ -3895,7 +4092,8 @@ input[type="submit"].btn.btn-mini { } .nav-pills > .active > a, -.nav-pills > .active > a:hover { +.nav-pills > .active > a:hover, +.nav-pills > .active > a:focus { color: #ffffff; background-color: #0088cc; } @@ -3937,7 +4135,8 @@ input[type="submit"].btn.btn-mini { -moz-border-radius-bottomleft: 4px; } -.nav-tabs.nav-stacked > li > a:hover { +.nav-tabs.nav-stacked > li > a:hover, +.nav-tabs.nav-stacked > li > a:focus { z-index: 2; border-color: #ddd; } @@ -3968,7 +4167,8 @@ input[type="submit"].btn.btn-mini { border-bottom-color: #0088cc; } -.nav .dropdown-toggle:hover .caret { +.nav .dropdown-toggle:hover .caret, +.nav .dropdown-toggle:focus .caret { border-top-color: #005580; border-bottom-color: #005580; } @@ -3989,13 +4189,15 @@ input[type="submit"].btn.btn-mini { border-bottom-color: #555555; } -.nav > .dropdown.active > a:hover { +.nav > .dropdown.active > a:hover, +.nav > .dropdown.active > a:focus { cursor: pointer; } .nav-tabs .open .dropdown-toggle, .nav-pills .open .dropdown-toggle, -.nav > li.dropdown.open.active > a:hover { +.nav > li.dropdown.open.active > a:hover, +.nav > li.dropdown.open.active > a:focus { color: #ffffff; background-color: #999999; border-color: #999999; @@ -4003,14 +4205,16 @@ input[type="submit"].btn.btn-mini { .nav li.dropdown.open .caret, .nav li.dropdown.open.active .caret, -.nav li.dropdown.open a:hover .caret { +.nav li.dropdown.open a:hover .caret, +.nav li.dropdown.open a:focus .caret { border-top-color: #ffffff; border-bottom-color: #ffffff; opacity: 1; filter: alpha(opacity=100); } -.tabs-stacked .open > a:hover { +.tabs-stacked .open > a:hover, +.tabs-stacked .open > a:focus { border-color: #999999; } @@ -4064,13 +4268,15 @@ input[type="submit"].btn.btn-mini { border-radius: 0 0 4px 4px; } -.tabs-below > .nav-tabs > li > a:hover { +.tabs-below > .nav-tabs > li > a:hover, +.tabs-below > .nav-tabs > li > a:focus { border-top-color: #ddd; border-bottom-color: transparent; } .tabs-below > .nav-tabs > .active > a, -.tabs-below > .nav-tabs > .active > a:hover { +.tabs-below > .nav-tabs > .active > a:hover, +.tabs-below > .nav-tabs > .active > a:focus { border-color: transparent #ddd #ddd #ddd; } @@ -4099,12 +4305,14 @@ input[type="submit"].btn.btn-mini { border-radius: 4px 0 0 4px; } -.tabs-left > .nav-tabs > li > a:hover { +.tabs-left > .nav-tabs > li > a:hover, +.tabs-left > .nav-tabs > li > a:focus { border-color: #eeeeee #dddddd #eeeeee #eeeeee; } .tabs-left > .nav-tabs .active > a, -.tabs-left > .nav-tabs .active > a:hover { +.tabs-left > .nav-tabs .active > a:hover, +.tabs-left > .nav-tabs .active > a:focus { border-color: #ddd transparent #ddd #ddd; *border-right-color: #ffffff; } @@ -4122,12 +4330,14 @@ input[type="submit"].btn.btn-mini { border-radius: 0 4px 4px 0; } -.tabs-right > .nav-tabs > li > a:hover { +.tabs-right > .nav-tabs > li > a:hover, +.tabs-right > .nav-tabs > li > a:focus { border-color: #eeeeee #eeeeee #eeeeee #dddddd; } .tabs-right > .nav-tabs .active > a, -.tabs-right > .nav-tabs .active > a:hover { +.tabs-right > .nav-tabs .active > a:hover, +.tabs-right > .nav-tabs .active > a:focus { border-color: #ddd #ddd #ddd transparent; *border-left-color: #ffffff; } @@ -4136,7 +4346,8 @@ input[type="submit"].btn.btn-mini { color: #999999; } -.nav > .disabled > a:hover { +.nav > .disabled > a:hover, +.nav > .disabled > a:focus { text-decoration: none; cursor: default; background-color: transparent; @@ -4147,7 +4358,6 @@ input[type="submit"].btn.btn-mini { *z-index: 2; margin-bottom: 20px; overflow: visible; - color: #777777; } .navbar-inner { @@ -4165,7 +4375,7 @@ input[type="submit"].btn.btn-mini { -webkit-border-radius: 4px; -moz-border-radius: 4px; border-radius: 4px; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff2f2f2', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff2f2f2', GradientType=0); *zoom: 1; -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); @@ -4189,6 +4399,7 @@ input[type="submit"].btn.btn-mini { .nav-collapse.collapse { height: auto; + overflow: visible; } .navbar .brand { @@ -4202,20 +4413,23 @@ input[type="submit"].btn.btn-mini { text-shadow: 0 1px 0 #ffffff; } -.navbar .brand:hover { +.navbar .brand:hover, +.navbar .brand:focus { text-decoration: none; } .navbar-text { margin-bottom: 0; line-height: 40px; + color: #777777; } .navbar-link { color: #777777; } -.navbar-link:hover { +.navbar-link:hover, +.navbar-link:focus { color: #333333; } @@ -4233,7 +4447,9 @@ input[type="submit"].btn.btn-mini { .navbar .btn-group .btn, .navbar .input-prepend .btn, -.navbar .input-append .btn { +.navbar .input-append .btn, +.navbar .input-prepend .btn-group, +.navbar .input-append .btn-group { margin-top: 0; } @@ -4275,7 +4491,7 @@ input[type="submit"].btn.btn-mini { .navbar-form .input-append, .navbar-form .input-prepend { - margin-top: 6px; + margin-top: 5px; white-space: nowrap; } @@ -4305,7 +4521,6 @@ input[type="submit"].btn.btn-mini { .navbar-static-top { position: static; - width: 100%; margin-bottom: 0; } @@ -4354,9 +4569,9 @@ input[type="submit"].btn.btn-mini { .navbar-fixed-top .navbar-inner, .navbar-static-top .navbar-inner { - -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); - -moz-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); - box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.1), 0 1px 10px rgba(0, 0, 0, 0.1); + -webkit-box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); + box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); } .navbar-fixed-bottom { @@ -4364,9 +4579,9 @@ input[type="submit"].btn.btn-mini { } .navbar-fixed-bottom .navbar-inner { - -webkit-box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); - -moz-box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); - box-shadow: inset 0 1px 0 rgba(0, 0, 0, 0.1), 0 -1px 10px rgba(0, 0, 0, 0.1); + -webkit-box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); + box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); } .navbar .nav { @@ -4426,22 +4641,23 @@ input[type="submit"].btn.btn-mini { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #ededed; *background-color: #e5e5e5; + background-image: -moz-linear-gradient(top, #f2f2f2, #e5e5e5); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f2f2f2), to(#e5e5e5)); background-image: -webkit-linear-gradient(top, #f2f2f2, #e5e5e5); background-image: -o-linear-gradient(top, #f2f2f2, #e5e5e5); background-image: linear-gradient(to bottom, #f2f2f2, #e5e5e5); - background-image: -moz-linear-gradient(top, #f2f2f2, #e5e5e5); background-repeat: repeat-x; border-color: #e5e5e5 #e5e5e5 #bfbfbf; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fff2f2f2', endColorstr='#ffe5e5e5', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2f2f2', endColorstr='#ffe5e5e5', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); } .navbar .btn-navbar:hover, +.navbar .btn-navbar:focus, .navbar .btn-navbar:active, .navbar .btn-navbar.active, .navbar .btn-navbar.disabled, @@ -4511,6 +4727,12 @@ input[type="submit"].btn.btn-mini { border-bottom: 0; } +.navbar .nav li.dropdown > a:hover .caret, +.navbar .nav li.dropdown > a:focus .caret { + border-top-color: #333333; + border-bottom-color: #333333; +} + .navbar .nav li.dropdown.open > .dropdown-toggle, .navbar .nav li.dropdown.active > .dropdown-toggle, .navbar .nav li.dropdown.open.active > .dropdown-toggle { @@ -4559,10 +4781,6 @@ input[type="submit"].btn.btn-mini { border-radius: 6px 0 6px 6px; } -.navbar-inverse { - color: #999999; -} - .navbar-inverse .navbar-inner { background-color: #1b1b1b; background-image: -moz-linear-gradient(top, #222222, #111111); @@ -4572,7 +4790,7 @@ input[type="submit"].btn.btn-mini { background-image: linear-gradient(to bottom, #222222, #111111); background-repeat: repeat-x; border-color: #252525; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff222222', endColorstr='#ff111111', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff222222', endColorstr='#ff111111', GradientType=0); } .navbar-inverse .brand, @@ -4582,10 +4800,20 @@ input[type="submit"].btn.btn-mini { } .navbar-inverse .brand:hover, -.navbar-inverse .nav > li > a:hover { +.navbar-inverse .nav > li > a:hover, +.navbar-inverse .brand:focus, +.navbar-inverse .nav > li > a:focus { color: #ffffff; } +.navbar-inverse .brand { + color: #999999; +} + +.navbar-inverse .navbar-text { + color: #999999; +} + .navbar-inverse .nav > li > a:focus, .navbar-inverse .nav > li > a:hover { color: #ffffff; @@ -4603,7 +4831,8 @@ input[type="submit"].btn.btn-mini { color: #999999; } -.navbar-inverse .navbar-link:hover { +.navbar-inverse .navbar-link:hover, +.navbar-inverse .navbar-link:focus { color: #ffffff; } @@ -4619,6 +4848,12 @@ input[type="submit"].btn.btn-mini { background-color: #111111; } +.navbar-inverse .nav li.dropdown > a:hover .caret, +.navbar-inverse .nav li.dropdown > a:focus .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + .navbar-inverse .nav li.dropdown > .dropdown-toggle .caret { border-top-color: #999999; border-bottom-color: #999999; @@ -4674,19 +4909,20 @@ input[type="submit"].btn.btn-mini { text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); background-color: #0e0e0e; *background-color: #040404; + background-image: -moz-linear-gradient(top, #151515, #040404); background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#151515), to(#040404)); background-image: -webkit-linear-gradient(top, #151515, #040404); background-image: -o-linear-gradient(top, #151515, #040404); background-image: linear-gradient(to bottom, #151515, #040404); - background-image: -moz-linear-gradient(top, #151515, #040404); background-repeat: repeat-x; border-color: #040404 #040404 #000000; border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff151515', endColorstr='#ff040404', GradientType=0); - filter: progid:dximagetransform.microsoft.gradient(enabled=false); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff151515', endColorstr='#ff040404', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); } .navbar-inverse .btn-navbar:hover, +.navbar-inverse .btn-navbar:focus, .navbar-inverse .btn-navbar:active, .navbar-inverse .btn-navbar.active, .navbar-inverse .btn-navbar.disabled, @@ -4711,24 +4947,23 @@ input[type="submit"].btn.btn-mini { border-radius: 4px; } -.breadcrumb li { +.breadcrumb > li { display: inline-block; *display: inline; text-shadow: 0 1px 0 #ffffff; *zoom: 1; } -.breadcrumb .divider { +.breadcrumb > li > .divider { padding: 0 5px; color: #ccc; } -.breadcrumb .active { +.breadcrumb > .active { color: #999999; } .pagination { - height: 40px; margin: 20px 0; } @@ -4737,9 +4972,9 @@ input[type="submit"].btn.btn-mini { *display: inline; margin-bottom: 0; margin-left: 0; - -webkit-border-radius: 3px; - -moz-border-radius: 3px; - border-radius: 3px; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; *zoom: 1; -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); -moz-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); @@ -4753,8 +4988,8 @@ input[type="submit"].btn.btn-mini { .pagination ul > li > a, .pagination ul > li > span { float: left; - padding: 0 14px; - line-height: 38px; + padding: 4px 12px; + line-height: 20px; text-decoration: none; background-color: #ffffff; border: 1px solid #dddddd; @@ -4762,6 +4997,7 @@ input[type="submit"].btn.btn-mini { } .pagination ul > li > a:hover, +.pagination ul > li > a:focus, .pagination ul > .active > a, .pagination ul > .active > span { background-color: #f5f5f5; @@ -4775,7 +5011,8 @@ input[type="submit"].btn.btn-mini { .pagination ul > .disabled > span, .pagination ul > .disabled > a, -.pagination ul > .disabled > a:hover { +.pagination ul > .disabled > a:hover, +.pagination ul > .disabled > a:focus { color: #999999; cursor: default; background-color: transparent; @@ -4784,16 +5021,22 @@ input[type="submit"].btn.btn-mini { .pagination ul > li:first-child > a, .pagination ul > li:first-child > span { border-left-width: 1px; - -webkit-border-radius: 3px 0 0 3px; - -moz-border-radius: 3px 0 0 3px; - border-radius: 3px 0 0 3px; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; + -moz-border-radius-topleft: 4px; } .pagination ul > li:last-child > a, .pagination ul > li:last-child > span { - -webkit-border-radius: 0 3px 3px 0; - -moz-border-radius: 0 3px 3px 0; - border-radius: 0 3px 3px 0; + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-bottomright: 4px; } .pagination-centered { @@ -4804,6 +5047,68 @@ input[type="submit"].btn.btn-mini { text-align: right; } +.pagination-large ul > li > a, +.pagination-large ul > li > span { + padding: 11px 19px; + font-size: 17.5px; +} + +.pagination-large ul > li:first-child > a, +.pagination-large ul > li:first-child > span { + -webkit-border-bottom-left-radius: 6px; + border-bottom-left-radius: 6px; + -webkit-border-top-left-radius: 6px; + border-top-left-radius: 6px; + -moz-border-radius-bottomleft: 6px; + -moz-border-radius-topleft: 6px; +} + +.pagination-large ul > li:last-child > a, +.pagination-large ul > li:last-child > span { + -webkit-border-top-right-radius: 6px; + border-top-right-radius: 6px; + -webkit-border-bottom-right-radius: 6px; + border-bottom-right-radius: 6px; + -moz-border-radius-topright: 6px; + -moz-border-radius-bottomright: 6px; +} + +.pagination-mini ul > li:first-child > a, +.pagination-small ul > li:first-child > a, +.pagination-mini ul > li:first-child > span, +.pagination-small ul > li:first-child > span { + -webkit-border-bottom-left-radius: 3px; + border-bottom-left-radius: 3px; + -webkit-border-top-left-radius: 3px; + border-top-left-radius: 3px; + -moz-border-radius-bottomleft: 3px; + -moz-border-radius-topleft: 3px; +} + +.pagination-mini ul > li:last-child > a, +.pagination-small ul > li:last-child > a, +.pagination-mini ul > li:last-child > span, +.pagination-small ul > li:last-child > span { + -webkit-border-top-right-radius: 3px; + border-top-right-radius: 3px; + -webkit-border-bottom-right-radius: 3px; + border-bottom-right-radius: 3px; + -moz-border-radius-topright: 3px; + -moz-border-radius-bottomright: 3px; +} + +.pagination-small ul > li > a, +.pagination-small ul > li > span { + padding: 2px 10px; + font-size: 11.9px; +} + +.pagination-mini ul > li > a, +.pagination-mini ul > li > span { + padding: 0 6px; + font-size: 10.5px; +} + .pager { margin: 20px 0; text-align: center; @@ -4826,8 +5131,8 @@ input[type="submit"].btn.btn-mini { display: inline; } -.pager a, -.pager span { +.pager li > a, +.pager li > span { display: inline-block; padding: 5px 14px; background-color: #fff; @@ -4837,44 +5142,31 @@ input[type="submit"].btn.btn-mini { border-radius: 15px; } -.pager a:hover { +.pager li > a:hover, +.pager li > a:focus { text-decoration: none; background-color: #f5f5f5; } -.pager .next a, -.pager .next span { +.pager .next > a, +.pager .next > span { float: right; } -.pager .previous a { +.pager .previous > a, +.pager .previous > span { float: left; } -.pager .disabled a, -.pager .disabled a:hover, -.pager .disabled span { +.pager .disabled > a, +.pager .disabled > a:hover, +.pager .disabled > a:focus, +.pager .disabled > span { color: #999999; cursor: default; background-color: #fff; } -.modal-open .modal .dropdown-menu { - z-index: 2050; -} - -.modal-open .modal .dropdown.open { - *z-index: 2050; -} - -.modal-open .modal .popover { - z-index: 2060; -} - -.modal-open .modal .tooltip { - z-index: 2080; -} - .modal-backdrop { position: fixed; top: 0; @@ -4897,12 +5189,11 @@ input[type="submit"].btn.btn-mini { .modal { position: fixed; - top: 50%; + top: 10%; left: 50%; z-index: 1050; width: 560px; - margin: -250px 0 0 -280px; - overflow: auto; + margin-left: -280px; background-color: #ffffff; border: 1px solid #999; border: 1px solid rgba(0, 0, 0, 0.3); @@ -4910,6 +5201,7 @@ input[type="submit"].btn.btn-mini { -webkit-border-radius: 6px; -moz-border-radius: 6px; border-radius: 6px; + outline: none; -webkit-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); -moz-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); @@ -4927,7 +5219,7 @@ input[type="submit"].btn.btn-mini { } .modal.fade.in { - top: 50%; + top: 10%; } .modal-header { @@ -4945,6 +5237,7 @@ input[type="submit"].btn.btn-mini { } .modal-body { + position: relative; max-height: 400px; padding: 15px; overflow-y: auto; @@ -4989,12 +5282,16 @@ input[type="submit"].btn.btn-mini { margin-left: -1px; } +.modal-footer .btn-block + .btn-block { + margin-left: 0; +} + .tooltip { position: absolute; z-index: 1030; display: block; - padding: 5px; font-size: 11px; + line-height: 1.4; opacity: 0; filter: alpha(opacity=0); visibility: visible; @@ -5006,24 +5303,28 @@ input[type="submit"].btn.btn-mini { } .tooltip.top { + padding: 5px 0; margin-top: -3px; } .tooltip.right { + padding: 0 5px; margin-left: 3px; } .tooltip.bottom { + padding: 5px 0; margin-top: 3px; } .tooltip.left { + padding: 0 5px; margin-left: -3px; } .tooltip-inner { max-width: 200px; - padding: 3px 8px; + padding: 8px; color: #ffffff; text-align: center; text-decoration: none; @@ -5079,8 +5380,10 @@ input[type="submit"].btn.btn-mini { left: 0; z-index: 1010; display: none; - width: 236px; + max-width: 276px; padding: 1px; + text-align: left; + white-space: normal; background-color: #ffffff; border: 1px solid #ccc; border: 1px solid rgba(0, 0, 0, 0.2); @@ -5096,7 +5399,7 @@ input[type="submit"].btn.btn-mini { } .popover.top { - margin-bottom: 10px; + margin-top: -10px; } .popover.right { @@ -5108,7 +5411,7 @@ input[type="submit"].btn.btn-mini { } .popover.left { - margin-right: 10px; + margin-left: -10px; } .popover-title { @@ -5124,89 +5427,95 @@ input[type="submit"].btn.btn-mini { border-radius: 5px 5px 0 0; } -.popover-content { - padding: 9px 14px; +.popover-title:empty { + display: none; } -.popover-content p, -.popover-content ul, -.popover-content ol { - margin-bottom: 0; +.popover-content { + padding: 9px 14px; } .popover .arrow, .popover .arrow:after { position: absolute; - display: inline-block; + display: block; width: 0; height: 0; border-color: transparent; border-style: solid; } +.popover .arrow { + border-width: 11px; +} + .popover .arrow:after { - z-index: -1; + border-width: 10px; content: ""; } .popover.top .arrow { - bottom: -10px; + bottom: -11px; left: 50%; - margin-left: -10px; - border-top-color: #ffffff; - border-width: 10px 10px 0; + margin-left: -11px; + border-top-color: #999; + border-top-color: rgba(0, 0, 0, 0.25); + border-bottom-width: 0; } .popover.top .arrow:after { - bottom: -1px; - left: -11px; - border-top-color: rgba(0, 0, 0, 0.25); - border-width: 11px 11px 0; + bottom: 1px; + margin-left: -10px; + border-top-color: #ffffff; + border-bottom-width: 0; } .popover.right .arrow { top: 50%; - left: -10px; - margin-top: -10px; - border-right-color: #ffffff; - border-width: 10px 10px 10px 0; + left: -11px; + margin-top: -11px; + border-right-color: #999; + border-right-color: rgba(0, 0, 0, 0.25); + border-left-width: 0; } .popover.right .arrow:after { - bottom: -11px; - left: -1px; - border-right-color: rgba(0, 0, 0, 0.25); - border-width: 11px 11px 11px 0; + bottom: -10px; + left: 1px; + border-right-color: #ffffff; + border-left-width: 0; } .popover.bottom .arrow { - top: -10px; + top: -11px; left: 50%; - margin-left: -10px; - border-bottom-color: #ffffff; - border-width: 0 10px 10px; + margin-left: -11px; + border-bottom-color: #999; + border-bottom-color: rgba(0, 0, 0, 0.25); + border-top-width: 0; } .popover.bottom .arrow:after { - top: -1px; - left: -11px; - border-bottom-color: rgba(0, 0, 0, 0.25); - border-width: 0 11px 11px; + top: 1px; + margin-left: -10px; + border-bottom-color: #ffffff; + border-top-width: 0; } .popover.left .arrow { top: 50%; - right: -10px; - margin-top: -10px; - border-left-color: #ffffff; - border-width: 10px 0 10px 10px; + right: -11px; + margin-top: -11px; + border-left-color: #999; + border-left-color: rgba(0, 0, 0, 0.25); + border-right-width: 0; } .popover.left .arrow:after { - right: -1px; - bottom: -11px; - border-left-color: rgba(0, 0, 0, 0.25); - border-width: 11px 0 11px 11px; + right: 1px; + bottom: -10px; + border-left-color: #ffffff; + border-right-width: 0; } .thumbnails { @@ -5253,7 +5562,8 @@ input[type="submit"].btn.btn-mini { transition: all 0.2s ease-in-out; } -a.thumbnail:hover { +a.thumbnail:hover, +a.thumbnail:focus { border-color: #0088cc; -webkit-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); -moz-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); @@ -5272,8 +5582,47 @@ a.thumbnail:hover { color: #555555; } +.media, +.media-body { + overflow: hidden; + *overflow: visible; + zoom: 1; +} + +.media, +.media .media { + margin-top: 15px; +} + +.media:first-child { + margin-top: 0; +} + +.media-object { + display: block; +} + +.media-heading { + margin: 0 0 5px; +} + +.media > .pull-left { + margin-right: 10px; +} + +.media > .pull-right { + margin-left: 10px; +} + +.media-list { + margin-left: 0; + list-style: none; +} + .label, .badge { + display: inline-block; + padding: 2px 4px; font-size: 11.844px; font-weight: bold; line-height: 14px; @@ -5285,21 +5634,28 @@ a.thumbnail:hover { } .label { - padding: 1px 4px 2px; -webkit-border-radius: 3px; -moz-border-radius: 3px; border-radius: 3px; } .badge { - padding: 1px 9px 2px; + padding-right: 9px; + padding-left: 9px; -webkit-border-radius: 9px; -moz-border-radius: 9px; border-radius: 9px; } +.label:empty, +.badge:empty { + display: none; +} + a.label:hover, -a.badge:hover { +a.label:focus, +a.badge:hover, +a.badge:focus { color: #ffffff; text-decoration: none; cursor: pointer; @@ -5425,7 +5781,7 @@ a.badge:hover { -webkit-border-radius: 4px; -moz-border-radius: 4px; border-radius: 4px; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#fff9f9f9', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#fff9f9f9', GradientType=0); -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); @@ -5446,7 +5802,7 @@ a.badge:hover { background-image: -o-linear-gradient(top, #149bdf, #0480be); background-image: linear-gradient(to bottom, #149bdf, #0480be); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff149bdf', endColorstr='#ff0480be', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff149bdf', endColorstr='#ff0480be', GradientType=0); -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); -moz-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); @@ -5495,7 +5851,7 @@ a.badge:hover { background-image: -o-linear-gradient(top, #ee5f5b, #c43c35); background-image: linear-gradient(to bottom, #ee5f5b, #c43c35); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffc43c35', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffc43c35', GradientType=0); } .progress-danger.progress-striped .bar, @@ -5517,7 +5873,7 @@ a.badge:hover { background-image: -o-linear-gradient(top, #62c462, #57a957); background-image: linear-gradient(to bottom, #62c462, #57a957); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff57a957', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff57a957', GradientType=0); } .progress-success.progress-striped .bar, @@ -5539,7 +5895,7 @@ a.badge:hover { background-image: -o-linear-gradient(top, #5bc0de, #339bb9); background-image: linear-gradient(to bottom, #5bc0de, #339bb9); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff339bb9', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff339bb9', GradientType=0); } .progress-info.progress-striped .bar, @@ -5561,7 +5917,7 @@ a.badge:hover { background-image: -o-linear-gradient(top, #fbb450, #f89406); background-image: linear-gradient(to bottom, #fbb450, #f89406); background-repeat: repeat-x; - filter: progid:dximagetransform.microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); } .progress-warning.progress-striped .bar, @@ -5616,7 +5972,7 @@ a.badge:hover { overflow: hidden; } -.carousel .item { +.carousel-inner > .item { position: relative; display: none; -webkit-transition: 0.6s ease-in-out left; @@ -5625,46 +5981,47 @@ a.badge:hover { transition: 0.6s ease-in-out left; } -.carousel .item > img { +.carousel-inner > .item > img, +.carousel-inner > .item > a > img { display: block; line-height: 1; } -.carousel .active, -.carousel .next, -.carousel .prev { +.carousel-inner > .active, +.carousel-inner > .next, +.carousel-inner > .prev { display: block; } -.carousel .active { +.carousel-inner > .active { left: 0; } -.carousel .next, -.carousel .prev { +.carousel-inner > .next, +.carousel-inner > .prev { position: absolute; top: 0; width: 100%; } -.carousel .next { +.carousel-inner > .next { left: 100%; } -.carousel .prev { +.carousel-inner > .prev { left: -100%; } -.carousel .next.left, -.carousel .prev.right { +.carousel-inner > .next.left, +.carousel-inner > .prev.right { left: 0; } -.carousel .active.left { +.carousel-inner > .active.left { left: -100%; } -.carousel .active.right { +.carousel-inner > .active.right { left: 100%; } @@ -5694,13 +6051,39 @@ a.badge:hover { left: auto; } -.carousel-control:hover { +.carousel-control:hover, +.carousel-control:focus { color: #ffffff; text-decoration: none; opacity: 0.9; filter: alpha(opacity=90); } +.carousel-indicators { + position: absolute; + top: 15px; + right: 15px; + z-index: 5; + margin: 0; + list-style: none; +} + +.carousel-indicators li { + display: block; + float: left; + width: 10px; + height: 10px; + margin-left: 5px; + text-indent: -999px; + background-color: #ccc; + background-color: rgba(255, 255, 255, 0.25); + border-radius: 5px; +} + +.carousel-indicators .active { + background-color: #fff; +} + .carousel-caption { position: absolute; right: 0; @@ -5728,6 +6111,10 @@ a.badge:hover { .hero-unit { padding: 60px; margin-bottom: 30px; + font-size: 18px; + font-weight: 200; + line-height: 30px; + color: inherit; background-color: #eeeeee; -webkit-border-radius: 6px; -moz-border-radius: 6px; @@ -5742,11 +6129,8 @@ a.badge:hover { color: inherit; } -.hero-unit p { - font-size: 18px; - font-weight: 200; +.hero-unit li { line-height: 30px; - color: inherit; } .pull-right { diff --git a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.min.css b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.min.css index 31d8b960..c10c7f41 100644 --- 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bottom,#fbb450,#f89406);background-repeat:repeat-x;filter:progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffbb450',endColorstr='#fff89406',GradientType=0)}.progress-warning.progress-striped .bar,.progress-striped .bar-warning{background-color:#fbb450;background-image:-webkit-gradient(linear,0 100%,100% 0,color-stop(0.25,rgba(255,255,255,0.15)),color-stop(0.25,transparent),color-stop(0.5,transparent),color-stop(0.5,rgba(255,255,255,0.15)),color-stop(0.75,rgba(255,255,255,0.15)),color-stop(0.75,transparent),to(transparent));background-image:-webkit-linear-gradient(45deg,rgba(255,255,255,0.15) 25%,transparent 25%,transparent 50%,rgba(255,255,255,0.15) 50%,rgba(255,255,255,0.15) 75%,transparent 75%,transparent);background-image:-moz-linear-gradient(45deg,rgba(255,255,255,0.15) 25%,transparent 25%,transparent 50%,rgba(255,255,255,0.15) 50%,rgba(255,255,255,0.15) 75%,transparent 75%,transparent);background-image:-o-linear-gradient(45deg,rgba(255,255,255,0.15) 25%,transparent 25%,transparent 50%,rgba(255,255,255,0.15) 50%,rgba(255,255,255,0.15) 75%,transparent 75%,transparent);background-image:linear-gradient(45deg,rgba(255,255,255,0.15) 25%,transparent 25%,transparent 50%,rgba(255,255,255,0.15) 50%,rgba(255,255,255,0.15) 75%,transparent 75%,transparent)}.accordion{margin-bottom:20px}.accordion-group{margin-bottom:2px;border:1px solid #e5e5e5;-webkit-border-radius:4px;-moz-border-radius:4px;border-radius:4px}.accordion-heading{border-bottom:0}.accordion-heading .accordion-toggle{display:block;padding:8px 15px}.accordion-toggle{cursor:pointer}.accordion-inner{padding:9px 15px;border-top:1px solid #e5e5e5}.carousel{position:relative;margin-bottom:20px;line-height:1}.carousel-inner{position:relative;width:100%;overflow:hidden}.carousel-inner>.item{position:relative;display:none;-webkit-transition:.6s ease-in-out left;-moz-transition:.6s ease-in-out left;-o-transition:.6s ease-in-out left;transition:.6s ease-in-out left}.carousel-inner>.item>img,.carousel-inner>.item>a>img{display:block;line-height:1}.carousel-inner>.active,.carousel-inner>.next,.carousel-inner>.prev{display:block}.carousel-inner>.active{left:0}.carousel-inner>.next,.carousel-inner>.prev{position:absolute;top:0;width:100%}.carousel-inner>.next{left:100%}.carousel-inner>.prev{left:-100%}.carousel-inner>.next.left,.carousel-inner>.prev.right{left:0}.carousel-inner>.active.left{left:-100%}.carousel-inner>.active.right{left:100%}.carousel-control{position:absolute;top:40%;left:15px;width:40px;height:40px;margin-top:-20px;font-size:60px;font-weight:100;line-height:30px;color:#fff;text-align:center;background:#222;border:3px solid #fff;-webkit-border-radius:23px;-moz-border-radius:23px;border-radius:23px;opacity:.5;filter:alpha(opacity=50)}.carousel-control.right{right:15px;left:auto}.carousel-control:hover,.carousel-control:focus{color:#fff;text-decoration:none;opacity:.9;filter:alpha(opacity=90)}.carousel-indicators{position:absolute;top:15px;right:15px;z-index:5;margin:0;list-style:none}.carousel-indicators li{display:block;float:left;width:10px;height:10px;margin-left:5px;text-indent:-999px;background-color:#ccc;background-color:rgba(255,255,255,0.25);border-radius:5px}.carousel-indicators .active{background-color:#fff}.carousel-caption{position:absolute;right:0;bottom:0;left:0;padding:15px;background:#333;background:rgba(0,0,0,0.75)}.carousel-caption h4,.carousel-caption p{line-height:20px;color:#fff}.carousel-caption h4{margin:0 0 5px}.carousel-caption p{margin-bottom:0}.hero-unit{padding:60px;margin-bottom:30px;font-size:18px;font-weight:200;line-height:30px;color:inherit;background-color:#eee;-webkit-border-radius:6px;-moz-border-radius:6px;border-radius:6px}.hero-unit h1{margin-bottom:0;font-size:60px;line-height:1;letter-spacing:-1px;color:inherit}.hero-unit li{line-height:30px}.pull-right{float:right}.pull-left{float:left}.hide{display:none}.show{display:block}.invisible{visibility:hidden}.affix{position:fixed} diff --git a/wqflask/wqflask/static/packages/bootstrap/img/bs-docs-masthead-pattern.png b/wqflask/wqflask/static/packages/bootstrap/img/bs-docs-masthead-pattern.png Binary files differnew file mode 100644 index 00000000..75c46a15 --- /dev/null +++ b/wqflask/wqflask/static/packages/bootstrap/img/bs-docs-masthead-pattern.png diff --git a/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.js b/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.js index f73fcb8e..c298ee42 100644 --- a/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.js +++ b/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.js @@ -1,5 +1,5 @@ /* =================================================== - * bootstrap-transition.js v2.1.1 + * bootstrap-transition.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#transitions * =================================================== * Copyright 2012 Twitter, Inc. @@ -20,13 +20,13 @@ !function ($) { - $(function () { + "use strict"; // jshint ;_; - "use strict"; // jshint ;_; + /* CSS TRANSITION SUPPORT (http://www.modernizr.com/) + * ======================================================= */ - /* CSS TRANSITION SUPPORT (http://www.modernizr.com/) - * ======================================================= */ + $(function () { $.support.transition = (function () { @@ -58,7 +58,7 @@ }) }(window.jQuery);/* ========================================================== - * bootstrap-alert.js v2.1.1 + * bootstrap-alert.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#alerts * ========================================================== * Copyright 2012 Twitter, Inc. @@ -127,6 +127,8 @@ /* ALERT PLUGIN DEFINITION * ======================= */ + var old = $.fn.alert + $.fn.alert = function (option) { return this.each(function () { var $this = $(this) @@ -139,15 +141,22 @@ $.fn.alert.Constructor = Alert + /* ALERT NO CONFLICT + * ================= */ + + $.fn.alert.noConflict = function () { + $.fn.alert = old + return this + } + + /* ALERT DATA-API * ============== */ - $(function () { - $('body').on('click.alert.data-api', dismiss, Alert.prototype.close) - }) + $(document).on('click.alert.data-api', dismiss, Alert.prototype.close) }(window.jQuery);/* ============================================================ - * bootstrap-button.js v2.1.1 + * bootstrap-button.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#buttons * ============================================================ * Copyright 2012 Twitter, Inc. @@ -212,6 +221,8 @@ /* BUTTON PLUGIN DEFINITION * ======================== */ + var old = $.fn.button + $.fn.button = function (option) { return this.each(function () { var $this = $(this) @@ -230,19 +241,26 @@ $.fn.button.Constructor = Button + /* BUTTON NO CONFLICT + * ================== */ + + $.fn.button.noConflict = function () { + $.fn.button = old + return this + } + + /* BUTTON DATA-API * =============== */ - $(function () { - $('body').on('click.button.data-api', '[data-toggle^=button]', function ( e ) { - var $btn = $(e.target) - if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn') - $btn.button('toggle') - }) + $(document).on('click.button.data-api', '[data-toggle^=button]', function (e) { + var $btn = $(e.target) + if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn') + $btn.button('toggle') }) }(window.jQuery);/* ========================================================== - * bootstrap-carousel.js v2.1.1 + * bootstrap-carousel.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#carousel * ========================================================== * Copyright 2012 Twitter, Inc. @@ -271,8 +289,8 @@ var Carousel = function (element, options) { this.$element = $(element) + this.$indicators = this.$element.find('.carousel-indicators') this.options = options - this.options.slide && this.slide(this.options.slide) this.options.pause == 'hover' && this.$element .on('mouseenter', $.proxy(this.pause, this)) .on('mouseleave', $.proxy(this.cycle, this)) @@ -282,19 +300,24 @@ cycle: function (e) { if (!e) this.paused = false + if (this.interval) clearInterval(this.interval); this.options.interval && !this.paused && (this.interval = setInterval($.proxy(this.next, this), this.options.interval)) return this } + , getActiveIndex: function () { + this.$active = this.$element.find('.item.active') + this.$items = this.$active.parent().children() + return this.$items.index(this.$active) + } + , to: function (pos) { - var $active = this.$element.find('.item.active') - , children = $active.parent().children() - , activePos = children.index($active) + var activeIndex = this.getActiveIndex() , that = this - if (pos > (children.length - 1) || pos < 0) return + if (pos > (this.$items.length - 1) || pos < 0) return if (this.sliding) { return this.$element.one('slid', function () { @@ -302,18 +325,18 @@ }) } - if (activePos == pos) { + if (activeIndex == pos) { return this.pause().cycle() } - return this.slide(pos > activePos ? 'next' : 'prev', $(children[pos])) + return this.slide(pos > activeIndex ? 'next' : 'prev', $(this.$items[pos])) } , pause: function (e) { if (!e) this.paused = true if (this.$element.find('.next, .prev').length && $.support.transition.end) { this.$element.trigger($.support.transition.end) - this.cycle() + this.cycle(true) } clearInterval(this.interval) this.interval = null @@ -337,9 +360,7 @@ , direction = type == 'next' ? 'left' : 'right' , fallback = type == 'next' ? 'first' : 'last' , that = this - , e = $.Event('slide', { - relatedTarget: $next[0] - }) + , e this.sliding = true @@ -347,8 +368,21 @@ $next = $next.length ? $next : this.$element.find('.item')[fallback]() + e = $.Event('slide', { + relatedTarget: $next[0] + , direction: direction + }) + if ($next.hasClass('active')) return + if (this.$indicators.length) { + this.$indicators.find('.active').removeClass('active') + this.$element.one('slid', function () { + var $nextIndicator = $(that.$indicators.children()[that.getActiveIndex()]) + $nextIndicator && $nextIndicator.addClass('active') + }) + } + if ($.support.transition && this.$element.hasClass('slide')) { this.$element.trigger(e) if (e.isDefaultPrevented()) return @@ -382,6 +416,8 @@ /* CAROUSEL PLUGIN DEFINITION * ========================== */ + var old = $.fn.carousel + $.fn.carousel = function (option) { return this.each(function () { var $this = $(this) @@ -391,7 +427,7 @@ if (!data) $this.data('carousel', (data = new Carousel(this, options))) if (typeof option == 'number') data.to(option) else if (action) data[action]() - else if (options.interval) data.cycle() + else if (options.interval) data.pause().cycle() }) } @@ -403,21 +439,34 @@ $.fn.carousel.Constructor = Carousel + /* CAROUSEL NO CONFLICT + * ==================== */ + + $.fn.carousel.noConflict = function () { + $.fn.carousel = old + return this + } + /* CAROUSEL DATA-API * ================= */ - $(function () { - $('body').on('click.carousel.data-api', '[data-slide]', function ( e ) { - var $this = $(this), href - , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 - , options = !$target.data('modal') && $.extend({}, $target.data(), $this.data()) - $target.carousel(options) - e.preventDefault() - }) + $(document).on('click.carousel.data-api', '[data-slide], [data-slide-to]', function (e) { + var $this = $(this), href + , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7 + , options = $.extend({}, $target.data(), $this.data()) + , slideIndex + + $target.carousel(options) + + if (slideIndex = $this.attr('data-slide-to')) { + $target.data('carousel').pause().to(slideIndex).cycle() + } + + e.preventDefault() }) }(window.jQuery);/* ============================================================= - * bootstrap-collapse.js v2.1.1 + * bootstrap-collapse.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#collapse * ============================================================= * Copyright 2012 Twitter, Inc. @@ -470,7 +519,7 @@ , actives , hasData - if (this.transitioning) return + if (this.transitioning || this.$element.hasClass('in')) return dimension = this.dimension() scroll = $.camelCase(['scroll', dimension].join('-')) @@ -490,7 +539,7 @@ , hide: function () { var dimension - if (this.transitioning) return + if (this.transitioning || !this.$element.hasClass('in')) return dimension = this.dimension() this.reset(this.$element[dimension]()) this.transition('removeClass', $.Event('hide'), 'hidden') @@ -538,14 +587,16 @@ } - /* COLLAPSIBLE PLUGIN DEFINITION - * ============================== */ + /* COLLAPSE PLUGIN DEFINITION + * ========================== */ + + var old = $.fn.collapse $.fn.collapse = function (option) { return this.each(function () { var $this = $(this) , data = $this.data('collapse') - , options = typeof option == 'object' && option + , options = $.extend({}, $.fn.collapse.defaults, $this.data(), typeof option == 'object' && option) if (!data) $this.data('collapse', (data = new Collapse(this, options))) if (typeof option == 'string') data[option]() }) @@ -558,23 +609,30 @@ $.fn.collapse.Constructor = Collapse - /* COLLAPSIBLE DATA-API + /* COLLAPSE NO CONFLICT * ==================== */ - $(function () { - $('body').on('click.collapse.data-api', '[data-toggle=collapse]', function (e) { - var $this = $(this), href - , target = $this.attr('data-target') - || e.preventDefault() - || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7 - , option = $(target).data('collapse') ? 'toggle' : $this.data() - $this[$(target).hasClass('in') ? 'addClass' : 'removeClass']('collapsed') - $(target).collapse(option) - }) + $.fn.collapse.noConflict = function () { + $.fn.collapse = old + return this + } + + + /* COLLAPSE DATA-API + * ================= */ + + $(document).on('click.collapse.data-api', '[data-toggle=collapse]', function (e) { + var $this = $(this), href + , target = $this.attr('data-target') + || e.preventDefault() + || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7 + , option = $(target).data('collapse') ? 'toggle' : $this.data() + $this[$(target).hasClass('in') ? 'addClass' : 'removeClass']('collapsed') + $(target).collapse(option) }) }(window.jQuery);/* ============================================================ - * bootstrap-dropdown.js v2.1.1 + * bootstrap-dropdown.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#dropdowns * ============================================================ * Copyright 2012 Twitter, Inc. @@ -628,9 +686,10 @@ if (!isActive) { $parent.toggleClass('open') - $this.focus() } + $this.focus() + return false } @@ -655,9 +714,12 @@ isActive = $parent.hasClass('open') - if (!isActive || (isActive && e.keyCode == 27)) return $this.click() + if (!isActive || (isActive && e.keyCode == 27)) { + if (e.which == 27) $parent.find(toggle).focus() + return $this.click() + } - $items = $('[role=menu] li:not(.divider) a', $parent) + $items = $('[role=menu] li:not(.divider):visible a', $parent) if (!$items.length) return @@ -675,8 +737,9 @@ } function clearMenus() { - getParent($(toggle)) - .removeClass('open') + $(toggle).each(function () { + getParent($(this)).removeClass('open') + }) } function getParent($this) { @@ -688,8 +751,9 @@ selector = selector && /#/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7 } - $parent = $(selector) - $parent.length || ($parent = $this.parent()) + $parent = selector && $(selector) + + if (!$parent || !$parent.length) $parent = $this.parent() return $parent } @@ -698,6 +762,8 @@ /* DROPDOWN PLUGIN DEFINITION * ========================== */ + var old = $.fn.dropdown + $.fn.dropdown = function (option) { return this.each(function () { var $this = $(this) @@ -710,20 +776,28 @@ $.fn.dropdown.Constructor = Dropdown + /* DROPDOWN NO CONFLICT + * ==================== */ + + $.fn.dropdown.noConflict = function () { + $.fn.dropdown = old + return this + } + + /* APPLY TO STANDARD DROPDOWN ELEMENTS * =================================== */ - $(function () { - $('html') - .on('click.dropdown.data-api touchstart.dropdown.data-api', clearMenus) - $('body') - .on('click.dropdown touchstart.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() }) - .on('click.dropdown.data-api touchstart.dropdown.data-api' , toggle, Dropdown.prototype.toggle) - .on('keydown.dropdown.data-api touchstart.dropdown.data-api', toggle + ', [role=menu]' , Dropdown.prototype.keydown) - }) + $(document) + .on('click.dropdown.data-api', clearMenus) + .on('click.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() }) + .on('click.dropdown-menu', function (e) { e.stopPropagation() }) + .on('click.dropdown.data-api' , toggle, Dropdown.prototype.toggle) + .on('keydown.dropdown.data-api', toggle + ', [role=menu]' , Dropdown.prototype.keydown) -}(window.jQuery);/* ========================================================= - * bootstrap-modal.js v2.1.1 +}(window.jQuery); +/* ========================================================= + * bootstrap-modal.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#modals * ========================================================= * Copyright 2012 Twitter, Inc. @@ -773,8 +847,6 @@ if (this.isShown || e.isDefaultPrevented()) return - $('body').addClass('modal-open') - this.isShown = true this.escape() @@ -786,8 +858,7 @@ that.$element.appendTo(document.body) //don't move modals dom position } - that.$element - .show() + that.$element.show() if (transition) { that.$element[0].offsetWidth // force reflow @@ -796,13 +867,12 @@ that.$element .addClass('in') .attr('aria-hidden', false) - .focus() that.enforceFocus() transition ? - that.$element.one($.support.transition.end, function () { that.$element.trigger('shown') }) : - that.$element.trigger('shown') + that.$element.one($.support.transition.end, function () { that.$element.focus().trigger('shown') }) : + that.$element.focus().trigger('shown') }) } @@ -820,8 +890,6 @@ this.isShown = false - $('body').removeClass('modal-open') - this.escape() $(document).off('focusin.modal') @@ -868,16 +936,17 @@ }) } - , hideModal: function (that) { - this.$element - .hide() - .trigger('hidden') - - this.backdrop() + , hideModal: function () { + var that = this + this.$element.hide() + this.backdrop(function () { + that.removeBackdrop() + that.$element.trigger('hidden') + }) } , removeBackdrop: function () { - this.$backdrop.remove() + this.$backdrop && this.$backdrop.remove() this.$backdrop = null } @@ -891,14 +960,18 @@ this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />') .appendTo(document.body) - if (this.options.backdrop != 'static') { - this.$backdrop.click($.proxy(this.hide, this)) - } + this.$backdrop.click( + this.options.backdrop == 'static' ? + $.proxy(this.$element[0].focus, this.$element[0]) + : $.proxy(this.hide, this) + ) if (doAnimate) this.$backdrop[0].offsetWidth // force reflow this.$backdrop.addClass('in') + if (!callback) return + doAnimate ? this.$backdrop.one($.support.transition.end, callback) : callback() @@ -907,8 +980,8 @@ this.$backdrop.removeClass('in') $.support.transition && this.$element.hasClass('fade')? - this.$backdrop.one($.support.transition.end, $.proxy(this.removeBackdrop, this)) : - this.removeBackdrop() + this.$backdrop.one($.support.transition.end, callback) : + callback() } else if (callback) { callback() @@ -920,6 +993,8 @@ /* MODAL PLUGIN DEFINITION * ======================= */ + var old = $.fn.modal + $.fn.modal = function (option) { return this.each(function () { var $this = $(this) @@ -940,28 +1015,36 @@ $.fn.modal.Constructor = Modal + /* MODAL NO CONFLICT + * ================= */ + + $.fn.modal.noConflict = function () { + $.fn.modal = old + return this + } + + /* MODAL DATA-API * ============== */ - $(function () { - $('body').on('click.modal.data-api', '[data-toggle="modal"]', function ( e ) { - var $this = $(this) - , href = $this.attr('href') - , $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7 - , option = $target.data('modal') ? 'toggle' : $.extend({ remote: !/#/.test(href) && href }, $target.data(), $this.data()) + $(document).on('click.modal.data-api', '[data-toggle="modal"]', function (e) { + var $this = $(this) + , href = $this.attr('href') + , $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7 + , option = $target.data('modal') ? 'toggle' : $.extend({ remote:!/#/.test(href) && href }, $target.data(), $this.data()) - e.preventDefault() + e.preventDefault() - $target - .modal(option) - .one('hide', function () { - $this.focus() - }) - }) + $target + .modal(option) + .one('hide', function () { + $this.focus() + }) }) -}(window.jQuery);/* =========================================================== - * bootstrap-tooltip.js v2.1.1 +}(window.jQuery); +/* =========================================================== + * bootstrap-tooltip.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#tooltips * Inspired by the original jQuery.tipsy by Jason Frame * =========================================================== @@ -1000,19 +1083,27 @@ , init: function (type, element, options) { var eventIn , eventOut + , triggers + , trigger + , i this.type = type this.$element = $(element) this.options = this.getOptions(options) this.enabled = true - if (this.options.trigger == 'click') { - this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) - } else if (this.options.trigger != 'manual') { - eventIn = this.options.trigger == 'hover' ? 'mouseenter' : 'focus' - eventOut = this.options.trigger == 'hover' ? 'mouseleave' : 'blur' - this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) - this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) + triggers = this.options.trigger.split(' ') + + for (i = triggers.length; i--;) { + trigger = triggers[i] + if (trigger == 'click') { + this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) + } else if (trigger != 'manual') { + eventIn = trigger == 'hover' ? 'mouseenter' : 'focus' + eventOut = trigger == 'hover' ? 'mouseleave' : 'blur' + this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) + this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) + } } this.options.selector ? @@ -1021,7 +1112,7 @@ } , getOptions: function (options) { - options = $.extend({}, $.fn[this.type].defaults, options, this.$element.data()) + options = $.extend({}, $.fn[this.type].defaults, this.$element.data(), options) if (options.delay && typeof options.delay == 'number') { options.delay = { @@ -1034,7 +1125,15 @@ } , enter: function (e) { - var self = $(e.currentTarget)[this.type](this._options).data(this.type) + var defaults = $.fn[this.type].defaults + , options = {} + , self + + this._options && $.each(this._options, function (key, value) { + if (defaults[key] != value) options[key] = value + }, this) + + self = $(e.currentTarget)[this.type](options).data(this.type) if (!self.options.delay || !self.options.delay.show) return self.show() @@ -1059,14 +1158,16 @@ , show: function () { var $tip - , inside , pos , actualWidth , actualHeight , placement , tp + , e = $.Event('show') if (this.hasContent() && this.enabled) { + this.$element.trigger(e) + if (e.isDefaultPrevented()) return $tip = this.tip() this.setContent() @@ -1078,19 +1179,18 @@ this.options.placement.call(this, $tip[0], this.$element[0]) : this.options.placement - inside = /in/.test(placement) - $tip - .remove() + .detach() .css({ top: 0, left: 0, display: 'block' }) - .appendTo(inside ? this.$element : document.body) - pos = this.getPosition(inside) + this.options.container ? $tip.appendTo(this.options.container) : $tip.insertAfter(this.$element) + + pos = this.getPosition() actualWidth = $tip[0].offsetWidth actualHeight = $tip[0].offsetHeight - switch (inside ? placement.split(' ')[1] : placement) { + switch (placement) { case 'bottom': tp = {top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2} break @@ -1105,11 +1205,56 @@ break } - $tip - .css(tp) - .addClass(placement) - .addClass('in') + this.applyPlacement(tp, placement) + this.$element.trigger('shown') + } + } + + , applyPlacement: function(offset, placement){ + var $tip = this.tip() + , width = $tip[0].offsetWidth + , height = $tip[0].offsetHeight + , actualWidth + , actualHeight + , delta + , replace + + $tip + .offset(offset) + .addClass(placement) + .addClass('in') + + actualWidth = $tip[0].offsetWidth + actualHeight = $tip[0].offsetHeight + + if (placement == 'top' && actualHeight != height) { + offset.top = offset.top + height - actualHeight + replace = true + } + + if (placement == 'bottom' || placement == 'top') { + delta = 0 + + if (offset.left < 0){ + delta = offset.left * -2 + offset.left = 0 + $tip.offset(offset) + actualWidth = $tip[0].offsetWidth + actualHeight = $tip[0].offsetHeight + } + + this.replaceArrow(delta - width + actualWidth, actualWidth, 'left') + } else { + this.replaceArrow(actualHeight - height, actualHeight, 'top') } + + if (replace) $tip.offset(offset) + } + + , replaceArrow: function(delta, dimension, position){ + this + .arrow() + .css(position, delta ? (50 * (1 - delta / dimension) + "%") : '') } , setContent: function () { @@ -1123,23 +1268,29 @@ , hide: function () { var that = this , $tip = this.tip() + , e = $.Event('hide') + + this.$element.trigger(e) + if (e.isDefaultPrevented()) return $tip.removeClass('in') function removeWithAnimation() { var timeout = setTimeout(function () { - $tip.off($.support.transition.end).remove() + $tip.off($.support.transition.end).detach() }, 500) $tip.one($.support.transition.end, function () { clearTimeout(timeout) - $tip.remove() + $tip.detach() }) } $.support.transition && this.$tip.hasClass('fade') ? removeWithAnimation() : - $tip.remove() + $tip.detach() + + this.$element.trigger('hidden') return this } @@ -1147,7 +1298,7 @@ , fixTitle: function () { var $e = this.$element if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') { - $e.attr('data-original-title', $e.attr('title') || '').removeAttr('title') + $e.attr('data-original-title', $e.attr('title') || '').attr('title', '') } } @@ -1155,11 +1306,12 @@ return this.getTitle() } - , getPosition: function (inside) { - return $.extend({}, (inside ? {top: 0, left: 0} : this.$element.offset()), { - width: this.$element[0].offsetWidth - , height: this.$element[0].offsetHeight - }) + , getPosition: function () { + var el = this.$element[0] + return $.extend({}, (typeof el.getBoundingClientRect == 'function') ? el.getBoundingClientRect() : { + width: el.offsetWidth + , height: el.offsetHeight + }, this.$element.offset()) } , getTitle: function () { @@ -1177,6 +1329,10 @@ return this.$tip = this.$tip || $(this.options.template) } + , arrow: function(){ + return this.$arrow = this.$arrow || this.tip().find(".tooltip-arrow") + } + , validate: function () { if (!this.$element[0].parentNode) { this.hide() @@ -1197,8 +1353,9 @@ this.enabled = !this.enabled } - , toggle: function () { - this[this.tip().hasClass('in') ? 'hide' : 'show']() + , toggle: function (e) { + var self = e ? $(e.currentTarget)[this.type](this._options).data(this.type) : this + self.tip().hasClass('in') ? self.hide() : self.show() } , destroy: function () { @@ -1211,6 +1368,8 @@ /* TOOLTIP PLUGIN DEFINITION * ========================= */ + var old = $.fn.tooltip + $.fn.tooltip = function ( option ) { return this.each(function () { var $this = $(this) @@ -1228,15 +1387,25 @@ , placement: 'top' , selector: false , template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>' - , trigger: 'hover' + , trigger: 'hover focus' , title: '' , delay: 0 - , html: true + , html: false + , container: false + } + + + /* TOOLTIP NO CONFLICT + * =================== */ + + $.fn.tooltip.noConflict = function () { + $.fn.tooltip = old + return this } }(window.jQuery); /* =========================================================== - * bootstrap-popover.js v2.1.1 + * bootstrap-popover.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#popovers * =========================================================== * Copyright 2012 Twitter, Inc. @@ -1281,7 +1450,7 @@ , content = this.getContent() $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title) - $tip.find('.popover-content > *')[this.options.html ? 'html' : 'text'](content) + $tip.find('.popover-content')[this.options.html ? 'html' : 'text'](content) $tip.removeClass('fade top bottom left right in') } @@ -1295,8 +1464,8 @@ , $e = this.$element , o = this.options - content = $e.attr('data-content') - || (typeof o.content == 'function' ? o.content.call($e[0]) : o.content) + content = (typeof o.content == 'function' ? o.content.call($e[0]) : o.content) + || $e.attr('data-content') return content } @@ -1318,6 +1487,8 @@ /* POPOVER PLUGIN DEFINITION * ======================= */ + var old = $.fn.popover + $.fn.popover = function (option) { return this.each(function () { var $this = $(this) @@ -1334,11 +1505,21 @@ placement: 'right' , trigger: 'click' , content: '' - , template: '<div class="popover"><div class="arrow"></div><div class="popover-inner"><h3 class="popover-title"></h3><div class="popover-content"><p></p></div></div></div>' + , template: '<div class="popover"><div class="arrow"></div><h3 class="popover-title"></h3><div class="popover-content"></div></div>' }) -}(window.jQuery);/* ============================================================= - * bootstrap-scrollspy.js v2.1.1 + + /* POPOVER NO CONFLICT + * =================== */ + + $.fn.popover.noConflict = function () { + $.fn.popover = old + return this + } + +}(window.jQuery); +/* ============================================================= + * bootstrap-scrollspy.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#scrollspy * ============================================================= * Copyright 2012 Twitter, Inc. @@ -1398,7 +1579,7 @@ , $href = /^#\w/.test(href) && $(href) return ( $href && $href.length - && [[ $href.position().top, href ]] ) || null + && [[ $href.position().top + (!$.isWindow(self.$scrollElement.get(0)) && self.$scrollElement.scrollTop()), href ]] ) || null }) .sort(function (a, b) { return a[0] - b[0] }) .each(function () { @@ -1460,6 +1641,8 @@ /* SCROLLSPY PLUGIN DEFINITION * =========================== */ + var old = $.fn.scrollspy + $.fn.scrollspy = function (option) { return this.each(function () { var $this = $(this) @@ -1477,6 +1660,15 @@ } + /* SCROLLSPY NO CONFLICT + * ===================== */ + + $.fn.scrollspy.noConflict = function () { + $.fn.scrollspy = old + return this + } + + /* SCROLLSPY DATA-API * ================== */ @@ -1488,7 +1680,7 @@ }) }(window.jQuery);/* ======================================================== - * bootstrap-tab.js v2.1.1 + * bootstrap-tab.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#tabs * ======================================================== * Copyright 2012 Twitter, Inc. @@ -1538,7 +1730,7 @@ if ( $this.parent('li').hasClass('active') ) return - previous = $ul.find('.active a').last()[0] + previous = $ul.find('.active:last a')[0] e = $.Event('show', { relatedTarget: previous @@ -1599,6 +1791,8 @@ /* TAB PLUGIN DEFINITION * ===================== */ + var old = $.fn.tab + $.fn.tab = function ( option ) { return this.each(function () { var $this = $(this) @@ -1611,18 +1805,25 @@ $.fn.tab.Constructor = Tab + /* TAB NO CONFLICT + * =============== */ + + $.fn.tab.noConflict = function () { + $.fn.tab = old + return this + } + + /* TAB DATA-API * ============ */ - $(function () { - $('body').on('click.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) { - e.preventDefault() - $(this).tab('show') - }) + $(document).on('click.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) { + e.preventDefault() + $(this).tab('show') }) }(window.jQuery);/* ============================================================= - * bootstrap-typeahead.js v2.1.1 + * bootstrap-typeahead.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#typeahead * ============================================================= * Copyright 2012 Twitter, Inc. @@ -1656,8 +1857,8 @@ this.sorter = this.options.sorter || this.sorter this.highlighter = this.options.highlighter || this.highlighter this.updater = this.options.updater || this.updater - this.$menu = $(this.options.menu).appendTo('body') this.source = this.options.source + this.$menu = $(this.options.menu) this.shown = false this.listen() } @@ -1679,16 +1880,18 @@ } , show: function () { - var pos = $.extend({}, this.$element.offset(), { + var pos = $.extend({}, this.$element.position(), { height: this.$element[0].offsetHeight }) - this.$menu.css({ - top: pos.top + pos.height - , left: pos.left - }) + this.$menu + .insertAfter(this.$element) + .css({ + top: pos.top + pos.height + , left: pos.left + }) + .show() - this.$menu.show() this.shown = true return this } @@ -1793,17 +1996,28 @@ , listen: function () { this.$element + .on('focus', $.proxy(this.focus, this)) .on('blur', $.proxy(this.blur, this)) .on('keypress', $.proxy(this.keypress, this)) .on('keyup', $.proxy(this.keyup, this)) - if ($.browser.chrome || $.browser.webkit || $.browser.msie) { + if (this.eventSupported('keydown')) { this.$element.on('keydown', $.proxy(this.keydown, this)) } this.$menu .on('click', $.proxy(this.click, this)) .on('mouseenter', 'li', $.proxy(this.mouseenter, this)) + .on('mouseleave', 'li', $.proxy(this.mouseleave, this)) + } + + , eventSupported: function(eventName) { + var isSupported = eventName in this.$element + if (!isSupported) { + this.$element.setAttribute(eventName, 'return;') + isSupported = typeof this.$element[eventName] === 'function' + } + return isSupported } , move: function (e) { @@ -1831,7 +2045,7 @@ } , keydown: function (e) { - this.suppressKeyPressRepeat = !~$.inArray(e.keyCode, [40,38,9,13,27]) + this.suppressKeyPressRepeat = ~$.inArray(e.keyCode, [40,38,9,13,27]) this.move(e) } @@ -1844,6 +2058,9 @@ switch(e.keyCode) { case 40: // down arrow case 38: // up arrow + case 16: // shift + case 17: // ctrl + case 18: // alt break case 9: // tab @@ -1865,28 +2082,41 @@ e.preventDefault() } + , focus: function (e) { + this.focused = true + } + , blur: function (e) { - var that = this - setTimeout(function () { that.hide() }, 150) + this.focused = false + if (!this.mousedover && this.shown) this.hide() } , click: function (e) { e.stopPropagation() e.preventDefault() this.select() + this.$element.focus() } , mouseenter: function (e) { + this.mousedover = true this.$menu.find('.active').removeClass('active') $(e.currentTarget).addClass('active') } + , mouseleave: function (e) { + this.mousedover = false + if (!this.focused && this.shown) this.hide() + } + } /* TYPEAHEAD PLUGIN DEFINITION * =========================== */ + var old = $.fn.typeahead + $.fn.typeahead = function (option) { return this.each(function () { var $this = $(this) @@ -1908,21 +2138,27 @@ $.fn.typeahead.Constructor = Typeahead - /* TYPEAHEAD DATA-API + /* TYPEAHEAD NO CONFLICT + * =================== */ + + $.fn.typeahead.noConflict = function () { + $.fn.typeahead = old + return this + } + + + /* TYPEAHEAD DATA-API * ================== */ - $(function () { - $('body').on('focus.typeahead.data-api', '[data-provide="typeahead"]', function (e) { - var $this = $(this) - if ($this.data('typeahead')) return - e.preventDefault() - $this.typeahead($this.data()) - }) + $(document).on('focus.typeahead.data-api', '[data-provide="typeahead"]', function (e) { + var $this = $(this) + if ($this.data('typeahead')) return + $this.typeahead($this.data()) }) }(window.jQuery); /* ========================================================== - * bootstrap-affix.js v2.1.1 + * bootstrap-affix.js v2.3.1 * http://twitter.github.com/bootstrap/javascript.html#affix * ========================================================== * Copyright 2012 Twitter, Inc. @@ -1951,7 +2187,9 @@ var Affix = function (element, options) { this.options = $.extend({}, $.fn.affix.defaults, options) - this.$window = $(window).on('scroll.affix.data-api', $.proxy(this.checkPosition, this)) + this.$window = $(window) + .on('scroll.affix.data-api', $.proxy(this.checkPosition, this)) + .on('click.affix.data-api', $.proxy(function () { setTimeout($.proxy(this.checkPosition, this), 1) }, this)) this.$element = $(element) this.checkPosition() } @@ -1989,6 +2227,8 @@ /* AFFIX PLUGIN DEFINITION * ======================= */ + var old = $.fn.affix + $.fn.affix = function (option) { return this.each(function () { var $this = $(this) @@ -2006,6 +2246,15 @@ } + /* AFFIX NO CONFLICT + * ================= */ + + $.fn.affix.noConflict = function () { + $.fn.affix = old + return this + } + + /* AFFIX DATA-API * ============== */ diff --git a/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.min.js b/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.min.js index 0e33fb16..95c5ac5e 100644 --- a/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.min.js +++ b/wqflask/wqflask/static/packages/bootstrap/js/bootstrap.min.js @@ -3,4 +3,4 @@ * Copyright 2012 Twitter, Inc. * http://www.apache.org/licenses/LICENSE-2.0.txt */ -!function(e){e(function(){"use strict";e.support.transition=function(){var e=function(){var 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\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/README.md b/wqflask/wqflask/static/packages/colorbox/README.md new file mode 100644 index 00000000..693902bb --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/README.md @@ -0,0 +1,456 @@ +## About Colorbox: +A customizable lightbox plugin for jQuery. See the [project page](http://jacklmoore.com/colorbox/) for documentation and a demonstration, and the [FAQ](http://jacklmoore.com/colorbox/faq/) for solutions and examples to common issues. Released under the [MIT license](http://www.opensource.org/licenses/mit-license.php). + +## Translations Welcome +Send me your language configuration files. See /i18n/jquery.colorbox-de.js as an example. + +## Changelog: + +### Version 1.4.15 - 2013/4/22 + +* Added .webp to list of recognized image extensions + +### Version 1.4.14 - 2013/4/16 + +* Added fadeOut property to control the closing fadeOut speed. +* Removed longdesc attribute for now. + +### Version 1.4.13 - 2013/4/11 + +* Fixed an error involving IE7/IE8 and legacy versions of jQuery + +### Version 1.4.12 - 2013/4/9 + +* Fixed a potential conflict with Twitter Bootstrap default img styles. + +### Version 1.4.11 - 2013/4/9 + +* Added `type='button'` to buttons to prevent accidental form submission +* Added alt and longdesc attributes to photo content if they are present on the calling element. + +### Version 1.4.10 - 2013/4/2 + +* Better 'old IE' feature detection that fixes an error with jQuery 2.0.0pre. + +### Version 1.4.9 - 2013/4/2 + +* Fixes bug introduced in previous version. + +### Version 1.4.8 - 2013/4/2 + +* Dropped IE6 support. +* Fixed other issues with $.colorbox.remove. + +### Version 1.4.7 - 2013/4/1 + +* Prevented an error if $.colorbox.remove is called during the transition. + +### Version 1.4.6 - 2013/3/19 + +* Minor change to work around a jQuery 1.4.2 bug for legacy users. + +### Version 1.4.5 - 2013/3/10 + +* Minor change to apply the close and className properties sooner. + +### Version 1.4.4 - 2013/3/10 + +* Fixed an issue with percent-based heights in iOS +* Fixed an issue with ajax requests being applied at the wrong time. + +### Version 1.4.3 - 2013/2/18 + +* Made image preloading aware of retina settings. + +### Version 1.4.2 - 2013/2/18 + +* Removed $.contains for compatibility with jQuery 1.3.x + +### Version 1.4.1 - 2013/2/14 + +* Ignored left and right arrow keypresses if combined with the alt key. + +### Version 1.4.0 - 2013/2/12 + +* Better accessibility: + * Replaced div controls with buttons + * Tabbed navigation confined to modal window + * Added aria role + +### Version 1.3.34 - 2013/2/4 + +* Updated manifest for plugins.jquery.com + +### Version 1.3.33 - 2013/2/4 + +* Added retina display properties: retinaImage, retinaUrl, retinaSuffix +* Fixed iframe scrolling on iOS devices. + +### Version 1.3.32 - 2013/1/31 + +* Improved internal event subscribing & fixed event bug introduced in v1.3.21 + +### Version 1.3.31 - 2013/1/28 + +* Fixed a size-calculation bug introduced in the previous commit. + +### Version 1.3.30 - 2013/1/25 + +* Delayed border-width calculations until after opening, to avoid a bug in FF when using Colorbox in a hidden iframe. + +### Version 1.3.29 - 2013/1/24 + +* Fixes bug with bubbling delegated events, introduced in the previous commit. + +### Version 1.3.28 - 2013/1/24 + +* Fixed compatibility issue with old versions of jQuery (1.3.2-1.4.2) + +### Version 1.3.27 - 2013/1/23 + +* Added className property. + +### Version 1.3.26 - 2013/1/23 + +* Minor bugfix: clear the onload event handler after photo has loaded. + +### Version 1.3.25 - 2013/1/23 + +* Removed grunt file & added Bower component.json. + +### Version 1.3.24 - 2013/1/22 + +* Added generated files (jquery.colorbox.js / jquery.colorbox-min.js) back to the repository. + +### Version 1.3.23 - 2013/1/18 + +* Minor bugfix for calling Colorbox on empty jQuery collections without a selector. + +### Version 1.3.22 - 2013/1/17 + +* Recommit for plugins.jquery.com + +### Version 1.3.21 - 2013/1/15 +Files Changed: *.js + +* Fixed compatability issues with jQuery 1.9 + +### Version 1.3.20 - August 15 2012 +Files Changed:jquery.colorbox.js + +* Added temporary workaround for jQuery-UI 1.8 bug (http://bugs.jquery.com/ticket/12273) +* Added *.jpe extension to the list of image types. + +### Version 1.3.19 - December 08 2011 +Files Changed:jquery.colorbox.js, colorbox.css (all) + +* Fixed bug related to using the 'fixed' property. +* Optimized the setup procedure to be more efficient. +* Removed $.colorbox.init() as it will no longer be needed (will self-init when called). +* Removed use of $.browser. + +### Version 1.3.18 - October 07 2011 +Files Changed:jquery.colorbox.js/jquery.colorbox-min.js, colorbox.css (all) and example 1's controls.png + +* Fixed a regression where Flash content displayed in Colorbox would be reloaded if the browser window was resized. +* Added safety check to make sure that Colorbox's markup is only added to the DOM a single time, even if $.colorbox.init() is called multiple times. This will allow site owners to manually initialize Colorbox if they need it before the DOM has finished loading. +* Updated the example index.html files to be HTML5 compliant. +* Changed the slideshow behavior so that it immediately moves to the next slide when the slideshow is started. +* Minor regex bugfix to allow automatic detection of image URLs that include fragments. + +### Version 1.3.17 - May 11 2011 +Files Changed:jquery.colorbox.js/jquery.colorbox-min.js + +* Added properties "top", "bottom", "left" and "right" to specify a position relative to the viewport, rather than using the default centering. +* Added property "data" to specify GET or POST data when using Ajax. Colorbox's ajax functionality is handled by jQuery's .load() method, so the data property works the same way as it does with .load(). +* Added property "fixed" which can provide fixed positioning for Colorbox, rather than absolute positioning. This will allow Colorbox to remain in a fixed position within the visitors viewport, despite scrolling. IE6 support for this was not added, it will continue to use the default absolute positioning. +* Fixed ClearType problem with IE7. +* Minor fixes. + +### Version 1.3.16 - March 01 2011 +Files Changed:jquery.colorbox.js/jquery.colorbox-min.js, colorbox.css (all) and example 4 background png files + +* Better IE related transparency workarounds. IE7 and up now uses the same background image sprite as other browsers. +* Added error handling for broken image links. A message will be displayed telling the user that the image could not be loaded. +* Added new property: 'fastIframe' and set it to true by default. Setting to fastIframe:false will delay the loading graphic removal and onComplete event until iframe has completely loaded. +* Ability to redefine $.colorbox.close (or prev, or next) at any time. + +### Version 1.3.15 - October 27 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Minor fixes for specific cases. + +### Version 1.3.14 - October 27 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* In IE6, closing an iframe when using HTTPS no longer generates a security warning. + +### Version 1.3.13 - October 22 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Changed the index.html example files to use YouTube's new embedded link format. +* By default, Colorbox returns focus to the element it was launched from once it closes. This can now be disabled by setting the 'returnFocus' property to false. Focus was causing problems for some users who had their anchor elements inside animated containers. +* Minor bug fix involved in using a combination of slideshow and non-slideshow content. + +### Version 1.3.12 - October 20 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Minor bug fix involved in preloading images when using a function as a value for the href property. + +### Version 1.3.11 - October 19 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed the slideshow functionality that broke with 1.3.10 +* The slideshow now respects the loop property. + +### Version 1.3.10 - October 16 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed compatibility with jQuery 1.4.3 +* The 'open' property now accepts a function as a value, like all of the other properties. +* Preloading now loads the correct href for images when using a dynamic (function) value for the href property. +* Fixed bug in Safari 3 for Win where Colorbox centered on the document, rather than the visitor's viewport. +* May have fixed an issue in Opera 10.6+ where Colorbox would rarely/randomly freeze up while switching between photos in a group. +* Some functionality better encapsulated & minor performance improvements. + +### Version 1.3.9 - July 7 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js/ all colorbox.css (the core styles) + +* Fixed a problem where iframed youtube videos would cause a security alert in IE. +* More code is event driven now, making the source easier to grasp. +* Removed some unnecessary style from the core CSS. + +### Version 1.3.8 - June 21 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed a bug in Chrome where it would sometimes render photos at 0 by 0 width and height (behavior introduced in recent update to Chrome). +* Fixed a bug where the onClosed callback would fire twice (only affected 1.3.7). +* Fixed a bug in IE7 that existed with some iframed websites that use JS to reposition the viewport caused Colorbox to move out of position. +* Abstracted the identifiers (HTML ids & classes, and JS plugin name, method, and events) so that the plugin can be easily rebranded. +* Small changes to improve either code readability or compression. + +### Version 1.3.7 - June 13 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js/index.html + +* $.colorbox can now be used for direct calls and accessing public methods. Example: $.colorbox.close(); +* Resize now accepts 'width', 'innerWidth', 'height' and 'innerHeight'. Example: $.colorbox.resize({width:"100%"}) +* Added option (loop:false) to disable looping in a group. +* Added options (escKey:false, arrowKey:false) to disable esc-key and arrow-key bindings. +* Added method for removing Colorbox from a document: $.colorbox.remove(); +* Fixed a bug where iframed URLs would be truncated if they contained an unencoded apostrophe. +* Now uses the exact href specified on an anchor, rather than the version returned by 'this.href'. This was causing "#example" to be normalized to "http://domain/#example" which interfered with how some users were setting up links to inline content. +* Changed example documents over to HTML5. + +### Version 1.3.6 - Jan 13 2010 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Small change to make Colorbox compatible with jQuery 1.4 + +### Version 1.3.5 - December 15 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed a bug introduced in 1.3.4 with IE7's display of example 2 and 3, and auto-width in Opera. +* Fixed a bug introduced in 1.3.4 where colorbox could not be launched by triggering an element's click event through JavaScript. +* Minor refinements. + +### Version 1.3.4 - December 5 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Event delegation is now used for elements that Colorbox is assigned to, rather than individual click events. +* Additional callbacks have been added to represent other stages of Colorbox's lifecycle. Available callbacks, in order of their execution: onOpen, onLoad, onComplete, onCleanup, onClosed These take place at the same time as the event hooks, but will be better suited than the hooks for targeting specific instances of Colorbox. +* Ajax content is now immediately added to the DOM to be more compatible if that content contains script tags. +* Focus is now returned to the calling element on closing. +* Fixed a bug where maxHeight and maxWidth did not work for non-photo content. +* Direct calls no longer need 'open:true', it is assumed. Example: `$.colorbox({html:'<p>Hi</p>'});` + +### Version 1.3.3 - November 7 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Changed $.colorbox.element() to return a jQuery object rather the DOM element. +* jQuery.colorbox-min.js is compressed with Google's Closure Compiler rather than YUI Compressor. + +### Version 1.3.2 - October 27 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Added 'innerWidth' and 'innerHeight' options to allow people to easily set the size dimensions for Colorbox, without having to anticipate the size of the borders and buttons. +* Renamed 'scrollbars' option to 'scrolling' to be in keeping with the existing HTML attribute. The option now also applies to iframes. +* Bug fix: In Safari, positioning occassionally incorrect when using '100%' dimensions. +* Bug fix: In IE6, the background overlay is briefly not full size when first viewing. +* Bug fix: In Firefox, opening Colorbox causes a split second shift with a small minority of webpage layouts. +* Simplified code in a few areas. + +### Version 1.3.1 - September 16 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js/colorbox.css/colorbox-ie.css(removed) + +* Removed the IE-only stylesheets and conditional comments for example styles 1 & 4. All CSS is handled by a single CSS file for all examples. +* Removed user-agent sniffing from the js and replaced it with feature detection. This will allow correct rendering for visitors masking their agent type. + +### Version 1.3.0 - September 15 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js/colorbox.css + +* Added $.colorbox.resize() method to allow Colorbox to resize it's height if it's contents change. +* Added 'scrollbars' option to allow users to turn off scrollbars when using the resize() method. +* Renamed the 'resize' option to be less ambiguous. It's now 'scalePhotos'. +* Renamed the 'cbox_close' event to be less ambiguous. It's now 'cbox_cleanup'. It is the first thing to happen in the close method while the 'cbox_closed' event is the last to happen. +* Fixed a bug with the slideshow mouseover graphics that appeared after Colorbox is opened a 2nd time. +* Fixed a bug where ClearType may not work in IE6&7 if using the fade transition. +* Minor code optimizations to increase compression. + +### Version 1.2.9 - August 7 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Minor change to enable use with $.getScript(); +* Minor change to the timing of the 'cbox_load' event so that it is more useful. +* Added a direct link to a YouTube video to the examples. + +### Version 1.2.8 - August 5 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed a bug with the overlay in IE6 +* Fixed a bug where left & right keypress events might be prematurely unbound. + +### Version 1.2.7 - July 31 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js, example stylesheets and background images (core styles have not changed and the updates will not affect existing user themes / old example themes) + +* Code cleanup and reduction, better organization and documentation in the full source. +* Added ability to use functions in place of static values for Colorbox's options (thanks Ken!). +* Added an option for straight HTML. Example: `$.colorbox({html:'<p>Howdy</p>', open:true})` +* Added an event for the beginning of the closing process. This is in addition to the event that already existed for when Colorbox had completely closed. 'cbox_close' and 'cbox_closed' respectively. +* Fixed a minor bug in IE6 that would cause a brief content shift in the parent document when opening Colorbox. +* Fixed a minor bug in IE6 that would reveal select elements that had a hidden visibility after closing Colorbox. +* The 'esc' key is unbound now when Colorbox is not open, to avoid any potential conflicts. +* Used background sprites for examples 1 & 4. Put IE-only (non-sprite) background images in a separate folder. +* Example themes 1, 3, & 4 received slight visual tweaks. +* Optimized pngs for smaller file size. +* Added slices, grid, and correct sizing to the Adobe Illustrator file, all theme files are now export ready! + +### Version 1.2.6 - July 15 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Fixed a bug with fixed width/height images in Opera 9.64. +* Fixed a bug with trying to set a value for rel during a direct call to Colorbox. Example: `$.colorbox({rel:'foo', open:true});` +* Changed how href/rel/title settings are determined to avoid users having to manually update Colorbox settings if they use JavaScript to update any of those attributes, after Colorbox has been defined. +* Fixed a FF3 bug where the back button was disabled after closing an iframe. + +### Version 1.2.5 - June 23 2009 +Files Changed: jquery.colorbox.js/jquery.colorbox-min.js + +* Changed the point at which iframe srcs are set (to eliminate the need to refresh the iframe once it has been added to the DOM). +* Removed unnecessary return values for a very slight code reduction. + +### Version 1.2.4 - June 9 2009 +Files Changed: jquery.colorbox.js, jquery.colorbox-min.js + +* Fixed an issue where Colorbox may not close completely if it is closed during a transition animation. +* Minor code reduction. + +### Version 1.2.3 - June 4 2009 +* Fixed a png transparency stacking issue in IE. +* More accurate Ajax auto-sizing if the user was depending on the #cboxLoadedContent ID for CSS styling. +* Added a public function for returning the current html element that Colorbox is associated with. Example use: var that = $.colorbox.element(); +* Added bicubic scaling for resized images in the original IE7. +* Removed the IE6 stylesheet and png files from Example 3. It now uses the same png file for the controls that the rest of the browsers use (an alpha transparency PNG8). This example now only has 2 graphics files and 1 stylesheet. + +### Version 1.2.2 - May 28 2009 +* Fixed an issue with the 'resize' option. + +### Version 1.2.1 - May 28 2009 +* Note: If you are upgrading, update your jquery.colorbox.js and colorbox.css files. +* Added photo resizing. +* Added a maximum width and maximum height. Example: {height:800, maxHeight:'100%'}, would allow the box to be a maximum potential height of 800px, instead of a fixed height of 800px. With maxHeight of 100% the height of Colorbox cannot exceed the height of the browser window. +* Added 'rel' setting to add the ability to set an alternative rel for any Colorbox call. This allows the user to group any combination of elements together for a gallery, or to override an existing rel. attribute so those element are not grouped together, without having to alter their rel in the HTML. +* Added a 'photo' setting to force Colorbox to display a link as a photo. Use this when automatic photo detection fails (such as using a url like 'photo.php' instead of 'photo.jpg', 'photo.jpg#1', or 'photo.jpg?pic=1') +* Removed the need to ever create disposable elements to call colorbox on. Colorbox can now be called directly, without being associated with any existing element, by using the following format: + `$.colorbox({open:true, href:'yourLink.xxx'});` +* Colorbox settings are now persistent and unique for each element. This allows for extremely flexible options for individual elements. You could use this to create a gallery in which each page in the gallery has different settings. One could be a photo with a fade transition, next could be an inline element with an elastic transition with a set width and height, etc. +* For user callbacks, 'this' now refers to the element colorbox was opened from. +* Fixed a minor grouping issue with IE6, when transition type is set to 'none'. +* Added an Adobe Illustrator file that contains the borders and buttons used in the various examples. + +### Version 1.2 - May 13 2009 +* Added a slideshow feature. +* Added re-positioning on browser resize. If the browser is resized, Colorbox will recenter itself onscreen. +* Added hooks for key events: cbox_open, cbox_load, cbox_complete, cbox_closed. +* Fixed an IE transparency-stacking problem, where transparent PNGs would show through to the background overlay. +* Fixed an IE iframe issue where the ifame might shift up and to the left under certain circumstances. +* Fixed an IE6 bug where the loading overlay was not at full height. +* Removed the delay in switching between same-sized gallery content when using transitions. +* Changed how iframes are loaded to make it more compatible with iframed pages that use DOM dependent JavaScript. +* Changed how the JS is structured to be better organized and increase compression. Increased documentation. +* Changed CSS :hover states to a .hover class. This sidesteps a minor IE8 bug with css hover states and allows easier access to hover state user styles from the JavaScript. +* Changed: elements added to the DOM have new ID's. The naming is more consistent and less likely to cause conflicts with existing website stylesheets. All stylesheets have been updated. +* Changed the behavior for prev/next links so that Colorbox does not get hung up on broken links. A visitor can now skip through broken or long-loading links by clicking prev/next buttons. +* Changed the naming of variables in the parameter map to be more concise and intuitive. +* Removed colorbox.css. Combined the colorbox.css styles with jquery.colorbox.js: the css file was not large enough to warrant being a separate file. + +### Version 1.1.6 - April 28 2009 +* Prevented the default action of the next & previous anchors and the left and right keys for gallery mode. +* Fixed a bug where the title element was being added back to the DOM when closing Colorbox while using inline content. +* Fixed a bug where IE7 would crash for example 2. +* Smaller filesize: removed a small amount of unused code and rewrote the HTML injection with less syntax. +* Added a public method for closing Colorbox: $.colorbox.close(). This will allow iframe users to add an event to close Colorbox without having to create an additional function. + +### Version 1.1.5 - April 11 2009 +* Fixed minor issues with exiting Colorbox. + +### Version 1.1.4 - April 08 2009 +* Fixed a bug in the fade transition where Colorbox not close completely if instructed to close during the fade-in portion of the transition. + +### Version 1.1.3 - April 06 2009 +* Fixed an IE6&7 issue with using Colorbox to display animated GIFs. + +### Version 1.1.2 - April 05 2009 +* Added ability to change content when Colorbox is already open. +* Added vertical photo centering now works for all browsers (this feature previously excluded IE6&7). +* Added namespacing to the esc-key keydown event for people who want to disable it: "keydown.colorClose" +* Added 'title' setting to add the ability to set an alternative title for any Colorbox call. +* Fixed rollover navigation issue with IE8. (Added JS-based rollover state due to a browser-bug.) +* Fixed an overflow issue for when the fixed width/height is smaller than the size of a photo. +* Fixed a bug in the fade transition where the border would still come up if Colorbox was closed mid-transition. +* Switch from JSMin to Yui Compressor for minification. Minified code now under 7KB. + +### Version 1.1.1 - March 31 2009 +* More robust image detection regex. Now detects image file types with url fragments and/or query strings. +* Added 'nofollow' exception to rel grouping. +* Changed how images are loaded into the DOM to prevent premature size calculation by Colorbox. +* Added timestamp to iframe name to prevent caching - this was a problem in some browsers if the user had multiple iframes and the visitor left the page and came back, or if they refreshed the page. + +### Version 1.1.0 - March 21 2009 +* Animation is now much smoother and less resource intensive. +* Added support for % sizing. +* Callback option added. +* Inline content now preserves JavaScript events, and changes made while Colorbox is open are also preserved. +* Added 'href' setting to add the ability to set an alternative href for any anchor, or to assign the Colorbox event to non-anchors. + Example: $('button').colorbox({'href':'process.php'}) + Example: $('a[href='http://msn.com']).colorbox({'href':'http://google.com', iframe:true}); +* Photos are now horizontally centered if they are smaller than the lightbox size. Also vertically centered for browsers newer than IE7. +* Buttons in the examples are now included in the 'protected zone'. The lightbox will never expand it's borders or buttons beyond an accessible area of the screen. +* Keypress events don't queue up by holding down the arrow keys. +* Added option to close Colorbox by clicking on the background overlay. +* Added 'none' transition setting. +* Changed 'contentIframe' and 'contentInline' to 'inline' and 'iframe'. Removed 'contentAjax' because it is automatically assumed for non-image file types. +* Changed 'contentWidth' and 'contentHeight' to 'fixedWidth' and 'fixedHeight'. These sizes now reflect the total size of the lightbox, not just the inner content. This is so users can accurately anticipate % sizes without fear of creating scrollbars. +* Clicking on a photo will now switch to the next photo in a set. +* Loading.gif is more stable in it's position. +* Added a minified version. +* Code passes JSLint. + +### Version 1.0.5 - March 11 2009 +* Redo: Fixed a bug where IE would cut off the bottom portion of a photo, if the photo was larger than the document dimensions. + +### Version 1.0.4 - March 10 2009 +* Added an option to allow users to automatically open the lightbox. Example usage: $(".colorbox").colorbox({open:true}); +* Fixed a bug where IE would cut off the bottom portion of a photo, if the photo was larger than the document dimensions. + +### Version 1.0.3 - March 09 2009 +* Fixed vertical centering for Safari 3.0.x. + +### Version 1.0.2 - March 06 2009 +* Corrected a typo. +* Changed the content-type check so that it does not assume all links to photos should actually display photos. This allows for Ajax/inline/and iframe calls on anchors linking to picture file types. + +### Version 1.0.1 - March 05 2009 +* Fixed keydown events (esc, left arrow, right arrow) for Webkit browsers. + +### Version 1.0 - March 03 2009 +* First release diff --git a/wqflask/wqflask/static/packages/colorbox/colorbox.ai b/wqflask/wqflask/static/packages/colorbox/colorbox.ai new file mode 100644 index 00000000..1b51881a --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/colorbox.ai @@ -0,0 +1,1811 @@ +%PDF-1.4
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rdf:parseType="Resource"> + <stEvt:action>saved</stEvt:action> + <stEvt:instanceID>xmp.iid:08C3BD25102DDD1181B594070CEB88D9</stEvt:instanceID> + <stEvt:when>2008-05-28T16:51:46-07:00</stEvt:when> + <stEvt:softwareAgent>Adobe Illustrator CS4</stEvt:softwareAgent> + <stEvt:changed> + <rdf:Bag> + <rdf:li>/</rdf:li> + </rdf:Bag> + </stEvt:changed> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>converted</stEvt:action> + <stEvt:params>from application/vnd.adobe.illustrator to application/vnd.adobe.illustrator</stEvt:params> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>saved</stEvt:action> + <stEvt:instanceID>xmp.iid:F77F11740720681192B0DFFC927805D7</stEvt:instanceID> + <stEvt:when>2008-05-30T21:26:38-07:00</stEvt:when> + <stEvt:softwareAgent>Adobe Illustrator CS4</stEvt:softwareAgent> + <stEvt:changed> + <rdf:Bag> + <rdf:li>/</rdf:li> + </rdf:Bag> + </stEvt:changed> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>converted</stEvt:action> + <stEvt:params>from application/vnd.adobe.illustrator to application/vnd.adobe.illustrator</stEvt:params> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>saved</stEvt:action> + <stEvt:instanceID>xmp.iid:F87F11740720681192B0DFFC927805D7</stEvt:instanceID> + <stEvt:when>2008-05-30T21:27-07:00</stEvt:when> + <stEvt:softwareAgent>Adobe Illustrator CS4</stEvt:softwareAgent> + <stEvt:changed> + <rdf:Bag> + <rdf:li>/</rdf:li> + </rdf:Bag> + </stEvt:changed> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>converted</stEvt:action> + <stEvt:params>from application/vnd.adobe.illustrator to application/vnd.adobe.illustrator</stEvt:params> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>saved</stEvt:action> + <stEvt:instanceID>xmp.iid:F97F1174072068119098B097FDA39BEF</stEvt:instanceID> + <stEvt:when>2008-06-02T13:26:10-07:00</stEvt:when> + <stEvt:softwareAgent>Adobe Illustrator CS4</stEvt:softwareAgent> + <stEvt:changed> + <rdf:Bag> + <rdf:li>/</rdf:li> + </rdf:Bag> + </stEvt:changed> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <stEvt:action>saved</stEvt:action> + <stEvt:instanceID>xmp.iid:8BC7D877974ADE11BCECCFF09938C3CC</stEvt:instanceID> + <stEvt:when>2009-05-27T04:22:07-04:00</stEvt:when> + <stEvt:softwareAgent>Adobe Illustrator CS4</stEvt:softwareAgent> + <stEvt:changed>/</stEvt:changed> + </rdf:li> + </rdf:Seq> + </xmpMM:History> + <xmpMM:DerivedFrom rdf:parseType="Resource"> + <stRef:instanceID>uuid:32300939-b1c4-8440-b812-b255b7b0d326</stRef:instanceID> + <stRef:documentID>xmp.did:F97F1174072068119098B097FDA39BEF</stRef:documentID> + <stRef:originalDocumentID>uuid:65E6390686CF11DBA6E2D887CEACB407</stRef:originalDocumentID> + <stRef:renditionClass>proof:pdf</stRef:renditionClass> + </xmpMM:DerivedFrom> + </rdf:Description> + <rdf:Description rdf:about="" + xmlns:illustrator="http://ns.adobe.com/illustrator/1.0/"> + <illustrator:StartupProfile>Web</illustrator:StartupProfile> + <illustrator:Type>Document</illustrator:Type> + </rdf:Description> + <rdf:Description rdf:about="" + xmlns:xmpTPg="http://ns.adobe.com/xap/1.0/t/pg/" + xmlns:stDim="http://ns.adobe.com/xap/1.0/sType/Dimensions#" + xmlns:xmpG="http://ns.adobe.com/xap/1.0/g/"> + <xmpTPg:NPages>1</xmpTPg:NPages> + <xmpTPg:HasVisibleTransparency>True</xmpTPg:HasVisibleTransparency> + <xmpTPg:HasVisibleOverprint>False</xmpTPg:HasVisibleOverprint> + <xmpTPg:MaxPageSize rdf:parseType="Resource"> + <stDim:w>1024.000000</stDim:w> + <stDim:h>768.000000</stDim:h> + <stDim:unit>Pixels</stDim:unit> + </xmpTPg:MaxPageSize> + <xmpTPg:PlateNames> + <rdf:Seq> + <rdf:li>Cyan</rdf:li> + <rdf:li>Magenta</rdf:li> + <rdf:li>Yellow</rdf:li> + <rdf:li>Black</rdf:li> + </rdf:Seq> + </xmpTPg:PlateNames> + <xmpTPg:SwatchGroups> + <rdf:Seq> + <rdf:li rdf:parseType="Resource"> + <xmpG:groupName>Default Swatch Group</xmpG:groupName> + <xmpG:groupType>0</xmpG:groupType> + <xmpG:Colorants> + <rdf:Seq> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>White</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>255</xmpG:red> + <xmpG:green>255</xmpG:green> + <xmpG:blue>255</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>Black</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>0</xmpG:green> + <xmpG:blue>0</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Red</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>255</xmpG:red> + <xmpG:green>0</xmpG:green> + <xmpG:blue>0</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Yellow</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>255</xmpG:red> + <xmpG:green>255</xmpG:green> + <xmpG:blue>0</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Green</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>255</xmpG:green> + <xmpG:blue>0</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Cyan</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>255</xmpG:green> + <xmpG:blue>255</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Blue</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>0</xmpG:green> + <xmpG:blue>255</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>RGB Magenta</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>255</xmpG:red> + <xmpG:green>0</xmpG:green> + <xmpG:blue>255</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=193 G=39 B=45</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>193</xmpG:red> + <xmpG:green>39</xmpG:green> + <xmpG:blue>45</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=237 G=28 B=36</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>237</xmpG:red> + <xmpG:green>28</xmpG:green> + <xmpG:blue>36</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=241 G=90 B=36</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>241</xmpG:red> + <xmpG:green>90</xmpG:green> + <xmpG:blue>36</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=247 G=147 B=30</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>247</xmpG:red> + <xmpG:green>147</xmpG:green> + <xmpG:blue>30</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=251 G=176 B=59</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>251</xmpG:red> + <xmpG:green>176</xmpG:green> + <xmpG:blue>59</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=252 G=238 B=33</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>252</xmpG:red> + <xmpG:green>238</xmpG:green> + <xmpG:blue>33</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=217 G=224 B=33</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>217</xmpG:red> + <xmpG:green>224</xmpG:green> + <xmpG:blue>33</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=140 G=198 B=63</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>140</xmpG:red> + <xmpG:green>198</xmpG:green> + <xmpG:blue>63</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=57 G=181 B=74</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>57</xmpG:red> + <xmpG:green>181</xmpG:green> + <xmpG:blue>74</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=0 G=146 B=69</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>146</xmpG:green> + <xmpG:blue>69</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=0 G=104 B=55</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>104</xmpG:green> + <xmpG:blue>55</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=34 G=181 B=115</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>34</xmpG:red> + <xmpG:green>181</xmpG:green> + <xmpG:blue>115</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=0 G=169 B=157</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>169</xmpG:green> + <xmpG:blue>157</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=41 G=171 B=226</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>41</xmpG:red> + <xmpG:green>171</xmpG:green> + <xmpG:blue>226</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=0 G=113 B=188</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>0</xmpG:red> + <xmpG:green>113</xmpG:green> + <xmpG:blue>188</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=46 G=49 B=146</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>46</xmpG:red> + <xmpG:green>49</xmpG:green> + <xmpG:blue>146</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=27 G=20 B=100</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>27</xmpG:red> + <xmpG:green>20</xmpG:green> + <xmpG:blue>100</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=102 G=45 B=145</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>102</xmpG:red> + <xmpG:green>45</xmpG:green> + <xmpG:blue>145</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=147 G=39 B=143</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>147</xmpG:red> + <xmpG:green>39</xmpG:green> + <xmpG:blue>143</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=158 G=0 B=93</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>158</xmpG:red> + <xmpG:green>0</xmpG:green> + <xmpG:blue>93</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=212 G=20 B=90</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>212</xmpG:red> + <xmpG:green>20</xmpG:green> + <xmpG:blue>90</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=237 G=30 B=121</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>237</xmpG:red> + <xmpG:green>30</xmpG:green> + <xmpG:blue>121</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=199 G=178 B=153</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>199</xmpG:red> + <xmpG:green>178</xmpG:green> + <xmpG:blue>153</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=153 G=134 B=117</xmpG:swatchName> + <xmpG:mode>RGB</xmpG:mode> + <xmpG:type>PROCESS</xmpG:type> + <xmpG:red>153</xmpG:red> + <xmpG:green>134</xmpG:green> + <xmpG:blue>117</xmpG:blue> + </rdf:li> + <rdf:li rdf:parseType="Resource"> + <xmpG:swatchName>R=115 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\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/component.json b/wqflask/wqflask/static/packages/colorbox/component.json new file mode 100644 index 00000000..9bf269bb --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/component.json @@ -0,0 +1,8 @@ +{ + "name": "jquery-colorbox", + "version": "1.4.15", + "main": "./jquery.colorbox-min.js", + "dependencies": { + "jquery": ">=1.3.2" + } +}
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/content/ajax.html b/wqflask/wqflask/static/packages/colorbox/content/ajax.html new file mode 100644 index 00000000..e772638a --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/content/ajax.html @@ -0,0 +1,11 @@ +<div id='homer' style="background:url(../content/homer.jpg) right center no-repeat #ececec; height:135px; width:280px; padding:30px 10px;"> + <strong>Homer</strong><br/> + <em>\noun\</em><br/> + <strong>1.</strong> American bonehead<br/> + <strong>2. Pull a Homer-</strong><br/> + to succeed despite<br/> + idiocy +</div> +<script> + $('#homer strong').css({color:'red'}); +</script>
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They are + ordered & tabbed in a way that represents the nesting of the generated HTML. +*/ +#cboxOverlay{background:url(images/overlay.png) repeat 0 0;} +#colorbox{outline:0;} + #cboxTopLeft{width:21px; height:21px; background:url(images/controls.png) no-repeat -101px 0;} + #cboxTopRight{width:21px; height:21px; background:url(images/controls.png) no-repeat -130px 0;} + #cboxBottomLeft{width:21px; height:21px; background:url(images/controls.png) no-repeat -101px -29px;} + #cboxBottomRight{width:21px; height:21px; background:url(images/controls.png) no-repeat -130px -29px;} + #cboxMiddleLeft{width:21px; background:url(images/controls.png) left top repeat-y;} + #cboxMiddleRight{width:21px; background:url(images/controls.png) right top repeat-y;} + #cboxTopCenter{height:21px; background:url(images/border.png) 0 0 repeat-x;} + #cboxBottomCenter{height:21px; background:url(images/border.png) 0 -29px repeat-x;} + #cboxContent{background:#fff; overflow:hidden;} + .cboxIframe{background:#fff;} + #cboxError{padding:50px; border:1px solid #ccc;} + #cboxLoadedContent{margin-bottom:28px;} + #cboxTitle{position:absolute; bottom:4px; left:0; text-align:center; width:100%; color:#949494;} + #cboxCurrent{position:absolute; bottom:4px; left:58px; color:#949494;} + #cboxLoadingOverlay{background:url(images/loading_background.png) no-repeat center center;} + #cboxLoadingGraphic{background:url(images/loading.gif) no-repeat center center;} + + /* these elements are buttons, and may need to have additional styles reset to avoid unwanted base styles */ + #cboxPrevious, #cboxNext, #cboxSlideshow, #cboxClose {border:0; padding:0; margin:0; overflow:visible; width:auto; background:none; } + + /* avoid outlines on :active (mouseclick), but preserve outlines on :focus (tabbed navigating) */ + #cboxPrevious:active, #cboxNext:active, #cboxSlideshow:active, #cboxClose:active {outline:0;} + + #cboxSlideshow{position:absolute; bottom:4px; right:30px; color:#0092ef;} + #cboxPrevious{position:absolute; bottom:0; left:0; background:url(images/controls.png) no-repeat -75px 0; width:25px; height:25px; text-indent:-9999px;} + #cboxPrevious:hover{background-position:-75px -25px;} + #cboxNext{position:absolute; bottom:0; left:27px; background:url(images/controls.png) no-repeat -50px 0; width:25px; height:25px; text-indent:-9999px;} + #cboxNext:hover{background-position:-50px -25px;} + #cboxClose{position:absolute; bottom:0; right:0; background:url(images/controls.png) no-repeat -25px 0; width:25px; height:25px; text-indent:-9999px;} + #cboxClose:hover{background-position:-25px -25px;} + +/* + The following fixes a problem where IE7 and IE8 replace a PNG's alpha transparency with a black fill + when an alpha filter (opacity change) is set on the element or ancestor element. This style is not applied to or needed in IE9. + See: http://jacklmoore.com/notes/ie-transparency-problems/ +*/ +.cboxIE #cboxTopLeft, +.cboxIE #cboxTopCenter, +.cboxIE #cboxTopRight, +.cboxIE #cboxBottomLeft, +.cboxIE #cboxBottomCenter, +.cboxIE #cboxBottomRight, +.cboxIE #cboxMiddleLeft, +.cboxIE #cboxMiddleRight { + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr=#00FFFFFF,endColorstr=#00FFFFFF); +}
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padding:0 10px;} + a:link, a:visited{text-decoration:none; color:#416CE5; border-bottom:1px solid #416CE5;} + h2{font-size:13px; margin:15px 0 0 0;} + </style> + <link rel="stylesheet" href="colorbox.css" /> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> + <script src="../jquery.colorbox.js"></script> + <script> + $(document).ready(function(){ + //Examples of how to assign the Colorbox event to elements + $(".group1").colorbox({rel:'group1'}); + $(".group2").colorbox({rel:'group2', transition:"fade"}); + $(".group3").colorbox({rel:'group3', transition:"none", width:"75%", height:"75%"}); + $(".group4").colorbox({rel:'group4', slideshow:true}); + $(".ajax").colorbox(); + $(".youtube").colorbox({iframe:true, innerWidth:425, innerHeight:344}); + $(".vimeo").colorbox({iframe:true, innerWidth:500, innerHeight:409}); + $(".iframe").colorbox({iframe:true, width:"80%", height:"80%"}); + $(".inline").colorbox({inline:true, width:"50%"}); + $(".callbacks").colorbox({ + onOpen:function(){ alert('onOpen: colorbox is about to open'); }, + onLoad:function(){ alert('onLoad: colorbox has started to load the targeted content'); }, + onComplete:function(){ alert('onComplete: colorbox has displayed the loaded content'); }, + onCleanup:function(){ alert('onCleanup: colorbox has begun the close process'); }, + onClosed:function(){ alert('onClosed: colorbox has completely closed'); } + }); + + $('.non-retina').colorbox({rel:'group5', transition:'none'}) + $('.retina').colorbox({rel:'group5', transition:'none', retinaImage:true, retinaUrl:true}); + + //Example of preserving a JavaScript event for inline calls. + $("#click").click(function(){ + $('#click').css({"background-color":"#f00", "color":"#fff", "cursor":"inherit"}).text("Open this window again and this message will still be here."); + return false; + }); + }); + </script> + </head> + <body> + <h1>Colorbox Demonstration</h1> + <h2>Elastic Transition</h2> + <p><a class="group1" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group1" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group1" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Fade Transition</h2> + <p><a class="group2" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee">Grouped Photo 1</a></p> + <p><a class="group2" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group2" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>No Transition + fixed width and height (75% of screen size)</h2> + <p><a class="group3" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group3" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group3" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Slideshow</h2> + <p><a class="group4" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group4" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group4" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Other Content Types</h2> + <p><a class='ajax' href="../content/ajax.html" title="Homer Defined">Outside HTML (Ajax)</a></p> + <p><a class='youtube' href="http://www.youtube.com/embed/617ANIA5Rqs?rel=0&wmode=transparent" title="The Knife: We Share Our Mother's Health">Flash / Video (Iframe/Direct Link To YouTube)</a></p> + <p><a class='vimeo' href="http://player.vimeo.com/video/2285902" title="Röyksopp: Remind Me">Flash / Video (Iframe/Direct Link To Vimeo)</a></p> + <p><a class='iframe' href="http://wikipedia.com">Outside Webpage (Iframe)</a></p> + <p><a class='inline' href="#inline_content">Inline HTML</a></p> + + <h2>Demonstration of using callbacks</h2> + <p><a class='callbacks' href="../content/marylou.jpg" title="Marylou on Cumberland Island">Example with alerts</a>. Callbacks and event-hooks allow users to extend functionality without having to rewrite parts of the plugin.</p> + + + <h2>Retina Images</h2> + <p><a class="retina" href="../content/daisy.jpg" title="Retina">Retina</a></p> + <p><a class="non-retina" href="../content/daisy.jpg" title="Non-Retina">Non-Retina</a></p> + + <!-- This contains the hidden content for inline calls --> + <div style='display:none'> + <div id='inline_content' style='padding:10px; background:#fff;'> + <p><strong>This content comes from a hidden element on this page.</strong></p> + <p>The inline option preserves bound JavaScript events and changes, and it puts the content back where it came from when it is closed.</p> + <p><a id="click" href="#" style='padding:5px; background:#ccc;'>Click me, it will be preserved!</a></p> + + <p><strong>If you try to open a new Colorbox while it is already open, it will update itself with the new content.</strong></p> + <p>Updating Content Example:<br /> + <a class="ajax" href="../content/ajax.html">Click here to load new content</a></p> + </div> + </div> + </body> +</html>
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They are + ordered & tabbed in a way that represents the nesting of the generated HTML. +*/ +#cboxOverlay{background:#fff;} +#colorbox{outline:0;} + #cboxContent{margin-top:32px; overflow:visible; background:#000;} + .cboxIframe{background:#fff;} + #cboxError{padding:50px; border:1px solid #ccc;} + #cboxLoadedContent{background:#000; padding:1px;} + #cboxLoadingGraphic{background:url(images/loading.gif) no-repeat center center;} + #cboxLoadingOverlay{background:#000;} + #cboxTitle{position:absolute; top:-22px; left:0; color:#000;} + #cboxCurrent{position:absolute; top:-22px; right:205px; text-indent:-9999px;} + + /* these elements are buttons, and may need to have additional styles reset to avoid unwanted base styles */ + #cboxPrevious, #cboxNext, #cboxSlideshow, #cboxClose {border:0; padding:0; margin:0; overflow:visible; text-indent:-9999px; width:20px; height:20px; position:absolute; top:-20px; background:url(images/controls.png) no-repeat 0 0;} + + /* avoid outlines on :active (mouseclick), but preserve outlines on :focus (tabbed navigating) */ + #cboxPrevious:active, #cboxNext:active, #cboxSlideshow:active, #cboxClose:active {outline:0;} + + #cboxPrevious{background-position:0px 0px; right:44px;} + #cboxPrevious:hover{background-position:0px -25px;} + #cboxNext{background-position:-25px 0px; right:22px;} + #cboxNext:hover{background-position:-25px -25px;} + #cboxClose{background-position:-50px 0px; right:0;} + #cboxClose:hover{background-position:-50px -25px;} + .cboxSlideshow_on #cboxPrevious, .cboxSlideshow_off #cboxPrevious{right:66px;} + .cboxSlideshow_on #cboxSlideshow{background-position:-75px -25px; right:44px;} + .cboxSlideshow_on #cboxSlideshow:hover{background-position:-100px -25px;} + .cboxSlideshow_off #cboxSlideshow{background-position:-100px 0px; right:44px;} + .cboxSlideshow_off #cboxSlideshow:hover{background-position:-75px -25px;} diff --git a/wqflask/wqflask/static/packages/colorbox/example2/images/controls.png b/wqflask/wqflask/static/packages/colorbox/example2/images/controls.png Binary files differnew file mode 100644 index 00000000..8569b57f --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example2/images/controls.png diff --git a/wqflask/wqflask/static/packages/colorbox/example2/images/loading.gif b/wqflask/wqflask/static/packages/colorbox/example2/images/loading.gif Binary files differnew file mode 100644 index 00000000..19c67bbd --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example2/images/loading.gif diff --git a/wqflask/wqflask/static/packages/colorbox/example2/index.html b/wqflask/wqflask/static/packages/colorbox/example2/index.html new file mode 100644 index 00000000..39a76f67 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example2/index.html @@ -0,0 +1,95 @@ +<!DOCTYPE html> +<html> + <head> + <meta charset='utf-8'/> + <title>Colorbox Examples</title> + <style> + body{font:12px/1.2 Verdana, sans-serif; padding:0 10px;} + a:link, a:visited{text-decoration:none; color:#416CE5; border-bottom:1px solid #416CE5;} + h2{font-size:13px; margin:15px 0 0 0;} + </style> + <link rel="stylesheet" href="colorbox.css" /> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> + <script src="../jquery.colorbox.js"></script> + <script> + $(document).ready(function(){ + //Examples of how to assign the Colorbox event to elements + $(".group1").colorbox({rel:'group1'}); + $(".group2").colorbox({rel:'group2', transition:"fade"}); + $(".group3").colorbox({rel:'group3', transition:"none", width:"75%", height:"75%"}); + $(".group4").colorbox({rel:'group4', slideshow:true}); + $(".ajax").colorbox(); + $(".youtube").colorbox({iframe:true, innerWidth:425, innerHeight:344}); + $(".vimeo").colorbox({iframe:true, innerWidth:500, innerHeight:409}); + $(".iframe").colorbox({iframe:true, width:"80%", height:"80%"}); + $(".inline").colorbox({inline:true, width:"50%"}); + $(".callbacks").colorbox({ + onOpen:function(){ alert('onOpen: colorbox is about to open'); }, + onLoad:function(){ alert('onLoad: colorbox has started to load the targeted content'); }, + onComplete:function(){ alert('onComplete: colorbox has displayed the loaded content'); }, + onCleanup:function(){ alert('onCleanup: colorbox has begun the close process'); }, + onClosed:function(){ alert('onClosed: colorbox has completely closed'); } + }); + + $('.non-retina').colorbox({rel:'group5', transition:'none'}) + $('.retina').colorbox({rel:'group5', transition:'none', retinaImage:true, retinaUrl:true}); + + //Example of preserving a JavaScript event for inline calls. + $("#click").click(function(){ + $('#click').css({"background-color":"#f00", "color":"#fff", "cursor":"inherit"}).text("Open this window again and this message will still be here."); + return false; + }); + }); + </script> + </head> + <body> + <h1>Colorbox Demonstration</h1> + <h2>Elastic Transition</h2> + <p><a class="group1" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group1" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group1" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Fade Transition</h2> + <p><a class="group2" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee">Grouped Photo 1</a></p> + <p><a class="group2" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group2" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>No Transition + fixed width and height (75% of screen size)</h2> + <p><a class="group3" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group3" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group3" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Slideshow</h2> + <p><a class="group4" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group4" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group4" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Other Content Types</h2> + <p><a class='ajax' href="../content/ajax.html" title="Homer Defined">Outside HTML (Ajax)</a></p> + <p><a class='youtube' href="http://www.youtube.com/embed/617ANIA5Rqs?rel=0&wmode=transparent" title="The Knife: We Share Our Mother's Health">Flash / Video (Iframe/Direct Link To YouTube)</a></p> + <p><a class='vimeo' href="http://player.vimeo.com/video/2285902" title="Röyksopp: Remind Me">Flash / Video (Iframe/Direct Link To Vimeo)</a></p> + <p><a class='iframe' href="http://wikipedia.com">Outside Webpage (Iframe)</a></p> + <p><a class='inline' href="#inline_content">Inline HTML</a></p> + + <h2>Demonstration of using callbacks</h2> + <p><a class='callbacks' href="../content/marylou.jpg" title="Marylou on Cumberland Island">Example with alerts</a>. Callbacks and event-hooks allow users to extend functionality without having to rewrite parts of the plugin.</p> + + + <h2>Retina Images</h2> + <p><a class="retina" href="../content/daisy.jpg" title="Retina">Retina</a></p> + <p><a class="non-retina" href="../content/daisy.jpg" title="Non-Retina">Non-Retina</a></p> + + <!-- This contains the hidden content for inline calls --> + <div style='display:none'> + <div id='inline_content' style='padding:10px; background:#fff;'> + <p><strong>This content comes from a hidden element on this page.</strong></p> + <p>The inline option preserves bound JavaScript events and changes, and it puts the content back where it came from when it is closed.</p> + <p><a id="click" href="#" style='padding:5px; background:#ccc;'>Click me, it will be preserved!</a></p> + + <p><strong>If you try to open a new Colorbox while it is already open, it will update itself with the new content.</strong></p> + <p>Updating Content Example:<br /> + <a class="ajax" href="../content/ajax.html">Click here to load new content</a></p> + </div> + </div> + </body> +</html>
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/example3/colorbox.css b/wqflask/wqflask/static/packages/colorbox/example3/colorbox.css new file mode 100644 index 00000000..f12844e1 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example3/colorbox.css @@ -0,0 +1,44 @@ +/* + Colorbox Core Style: + The following CSS is consistent between example themes and should not be altered. +*/ +#colorbox, #cboxOverlay, #cboxWrapper{position:absolute; top:0; left:0; z-index:9999; overflow:hidden;} +#cboxOverlay{position:fixed; width:100%; height:100%;} +#cboxMiddleLeft, #cboxBottomLeft{clear:left;} +#cboxContent{position:relative;} +#cboxLoadedContent{overflow:auto; -webkit-overflow-scrolling: touch;} +#cboxTitle{margin:0;} +#cboxLoadingOverlay, #cboxLoadingGraphic{position:absolute; top:0; left:0; width:100%; height:100%;} +#cboxPrevious, #cboxNext, #cboxClose, #cboxSlideshow{cursor:pointer;} +.cboxPhoto{float:left; margin:auto; border:0; display:block; max-width:none; -ms-interpolation-mode:bicubic;} +.cboxIframe{width:100%; height:100%; display:block; border:0;} +#colorbox, #cboxContent, #cboxLoadedContent{box-sizing:content-box; -moz-box-sizing:content-box; -webkit-box-sizing:content-box;} + +/* + User Style: + Change the following styles to modify the appearance of Colorbox. They are + ordered & tabbed in a way that represents the nesting of the generated HTML. +*/ +#cboxOverlay{background:#000;} +#colorbox{outline:0;} + #cboxContent{margin-top:20px;background:#000;} + .cboxIframe{background:#fff;} + #cboxError{padding:50px; border:1px solid #ccc;} + #cboxLoadedContent{border:5px solid #000; background:#fff;} + #cboxTitle{position:absolute; top:-20px; left:0; color:#ccc;} + #cboxCurrent{position:absolute; top:-20px; right:0px; color:#ccc;} + #cboxLoadingGraphic{background:url(images/loading.gif) no-repeat center center;} + + /* these elements are buttons, and may need to have additional styles reset to avoid unwanted base styles */ + #cboxPrevious, #cboxNext, #cboxSlideshow, #cboxClose {border:0; padding:0; margin:0; overflow:visible; width:auto; background:none; } + + /* avoid outlines on :active (mouseclick), but preserve outlines on :focus (tabbed navigating) */ + #cboxPrevious:active, #cboxNext:active, #cboxSlideshow:active, #cboxClose:active {outline:0;} + + #cboxSlideshow{position:absolute; top:-20px; right:90px; color:#fff;} + #cboxPrevious{position:absolute; top:50%; left:5px; margin-top:-32px; background:url(images/controls.png) no-repeat top left; width:28px; height:65px; text-indent:-9999px;} + #cboxPrevious:hover{background-position:bottom left;} + #cboxNext{position:absolute; top:50%; right:5px; margin-top:-32px; background:url(images/controls.png) no-repeat top right; width:28px; height:65px; text-indent:-9999px;} + #cboxNext:hover{background-position:bottom right;} + #cboxClose{position:absolute; top:5px; right:5px; display:block; background:url(images/controls.png) no-repeat top center; width:38px; height:19px; text-indent:-9999px;} + #cboxClose:hover{background-position:bottom center;} diff --git a/wqflask/wqflask/static/packages/colorbox/example3/images/controls.png b/wqflask/wqflask/static/packages/colorbox/example3/images/controls.png Binary files differnew file mode 100644 index 00000000..e1e97982 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example3/images/controls.png diff --git a/wqflask/wqflask/static/packages/colorbox/example3/images/loading.gif b/wqflask/wqflask/static/packages/colorbox/example3/images/loading.gif Binary files differnew file mode 100644 index 00000000..19c67bbd --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example3/images/loading.gif diff --git a/wqflask/wqflask/static/packages/colorbox/example3/index.html b/wqflask/wqflask/static/packages/colorbox/example3/index.html new file mode 100644 index 00000000..39a76f67 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example3/index.html @@ -0,0 +1,95 @@ +<!DOCTYPE html> +<html> + <head> + <meta charset='utf-8'/> + <title>Colorbox Examples</title> + <style> + body{font:12px/1.2 Verdana, sans-serif; padding:0 10px;} + a:link, a:visited{text-decoration:none; color:#416CE5; border-bottom:1px solid #416CE5;} + h2{font-size:13px; margin:15px 0 0 0;} + </style> + <link rel="stylesheet" href="colorbox.css" /> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> + <script src="../jquery.colorbox.js"></script> + <script> + $(document).ready(function(){ + //Examples of how to assign the Colorbox event to elements + $(".group1").colorbox({rel:'group1'}); + $(".group2").colorbox({rel:'group2', transition:"fade"}); + $(".group3").colorbox({rel:'group3', transition:"none", width:"75%", height:"75%"}); + $(".group4").colorbox({rel:'group4', slideshow:true}); + $(".ajax").colorbox(); + $(".youtube").colorbox({iframe:true, innerWidth:425, innerHeight:344}); + $(".vimeo").colorbox({iframe:true, innerWidth:500, innerHeight:409}); + $(".iframe").colorbox({iframe:true, width:"80%", height:"80%"}); + $(".inline").colorbox({inline:true, width:"50%"}); + $(".callbacks").colorbox({ + onOpen:function(){ alert('onOpen: colorbox is about to open'); }, + onLoad:function(){ alert('onLoad: colorbox has started to load the targeted content'); }, + onComplete:function(){ alert('onComplete: colorbox has displayed the loaded content'); }, + onCleanup:function(){ alert('onCleanup: colorbox has begun the close process'); }, + onClosed:function(){ alert('onClosed: colorbox has completely closed'); } + }); + + $('.non-retina').colorbox({rel:'group5', transition:'none'}) + $('.retina').colorbox({rel:'group5', transition:'none', retinaImage:true, retinaUrl:true}); + + //Example of preserving a JavaScript event for inline calls. + $("#click").click(function(){ + $('#click').css({"background-color":"#f00", "color":"#fff", "cursor":"inherit"}).text("Open this window again and this message will still be here."); + return false; + }); + }); + </script> + </head> + <body> + <h1>Colorbox Demonstration</h1> + <h2>Elastic Transition</h2> + <p><a class="group1" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group1" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group1" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Fade Transition</h2> + <p><a class="group2" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee">Grouped Photo 1</a></p> + <p><a class="group2" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group2" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>No Transition + fixed width and height (75% of screen size)</h2> + <p><a class="group3" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group3" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group3" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Slideshow</h2> + <p><a class="group4" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group4" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group4" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Other Content Types</h2> + <p><a class='ajax' href="../content/ajax.html" title="Homer Defined">Outside HTML (Ajax)</a></p> + <p><a class='youtube' href="http://www.youtube.com/embed/617ANIA5Rqs?rel=0&wmode=transparent" title="The Knife: We Share Our Mother's Health">Flash / Video (Iframe/Direct Link To YouTube)</a></p> + <p><a class='vimeo' href="http://player.vimeo.com/video/2285902" title="Röyksopp: Remind Me">Flash / Video (Iframe/Direct Link To Vimeo)</a></p> + <p><a class='iframe' href="http://wikipedia.com">Outside Webpage (Iframe)</a></p> + <p><a class='inline' href="#inline_content">Inline HTML</a></p> + + <h2>Demonstration of using callbacks</h2> + <p><a class='callbacks' href="../content/marylou.jpg" title="Marylou on Cumberland Island">Example with alerts</a>. Callbacks and event-hooks allow users to extend functionality without having to rewrite parts of the plugin.</p> + + + <h2>Retina Images</h2> + <p><a class="retina" href="../content/daisy.jpg" title="Retina">Retina</a></p> + <p><a class="non-retina" href="../content/daisy.jpg" title="Non-Retina">Non-Retina</a></p> + + <!-- This contains the hidden content for inline calls --> + <div style='display:none'> + <div id='inline_content' style='padding:10px; background:#fff;'> + <p><strong>This content comes from a hidden element on this page.</strong></p> + <p>The inline option preserves bound JavaScript events and changes, and it puts the content back where it came from when it is closed.</p> + <p><a id="click" href="#" style='padding:5px; background:#ccc;'>Click me, it will be preserved!</a></p> + + <p><strong>If you try to open a new Colorbox while it is already open, it will update itself with the new content.</strong></p> + <p>Updating Content Example:<br /> + <a class="ajax" href="../content/ajax.html">Click here to load new content</a></p> + </div> + </div> + </body> +</html>
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/example4/colorbox.css b/wqflask/wqflask/static/packages/colorbox/example4/colorbox.css new file mode 100644 index 00000000..1a3b899a --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/example4/colorbox.css @@ -0,0 +1,65 @@ +/* + Colorbox Core Style: + The following CSS is consistent between example themes and should not be altered. +*/ +#colorbox, #cboxOverlay, #cboxWrapper{position:absolute; top:0; left:0; z-index:9999; overflow:hidden;} +#cboxOverlay{position:fixed; width:100%; height:100%;} +#cboxMiddleLeft, #cboxBottomLeft{clear:left;} +#cboxContent{position:relative;} +#cboxLoadedContent{overflow:auto; -webkit-overflow-scrolling: touch;} +#cboxTitle{margin:0;} +#cboxLoadingOverlay, #cboxLoadingGraphic{position:absolute; top:0; left:0; width:100%; height:100%;} +#cboxPrevious, #cboxNext, #cboxClose, #cboxSlideshow{cursor:pointer;} +.cboxPhoto{float:left; margin:auto; border:0; display:block; max-width:none; -ms-interpolation-mode:bicubic;} +.cboxIframe{width:100%; height:100%; display:block; border:0;} +#colorbox, #cboxContent, #cboxLoadedContent{box-sizing:content-box; -moz-box-sizing:content-box; -webkit-box-sizing:content-box;} + +/* + User Style: + Change the following styles to modify the appearance of Colorbox. They are + ordered & tabbed in a way that represents the nesting of the generated HTML. +*/ +#cboxOverlay{background:#fff;} +#colorbox{outline:0;} + #cboxTopLeft{width:25px; height:25px; background:url(images/border1.png) no-repeat 0 0;} + #cboxTopCenter{height:25px; background:url(images/border1.png) repeat-x 0 -50px;} + #cboxTopRight{width:25px; height:25px; background:url(images/border1.png) no-repeat -25px 0;} + #cboxBottomLeft{width:25px; height:25px; background:url(images/border1.png) no-repeat 0 -25px;} + #cboxBottomCenter{height:25px; background:url(images/border1.png) repeat-x 0 -75px;} + #cboxBottomRight{width:25px; height:25px; background:url(images/border1.png) no-repeat -25px -25px;} + #cboxMiddleLeft{width:25px; background:url(images/border2.png) repeat-y 0 0;} + #cboxMiddleRight{width:25px; background:url(images/border2.png) repeat-y -25px 0;} + #cboxContent{background:#fff; overflow:hidden;} + .cboxIframe{background:#fff;} + #cboxError{padding:50px; border:1px solid #ccc;} + #cboxLoadedContent{margin-bottom:20px;} + #cboxTitle{position:absolute; bottom:0px; left:0; text-align:center; width:100%; color:#999;} + #cboxCurrent{position:absolute; bottom:0px; left:100px; color:#999;} + #cboxLoadingOverlay{background:#fff url(images/loading.gif) no-repeat 5px 5px;} + + /* these elements are buttons, and may need to have additional styles reset to avoid unwanted base styles */ + #cboxPrevious, #cboxNext, #cboxSlideshow, #cboxClose {border:0; padding:0; margin:0; overflow:visible; width:auto; background:none; } + + /* avoid outlines on :active (mouseclick), but preserve outlines on :focus (tabbed navigating) */ + #cboxPrevious:active, #cboxNext:active, #cboxSlideshow:active, #cboxClose:active {outline:0;} + + #cboxSlideshow{position:absolute; bottom:0px; right:42px; color:#444;} + #cboxPrevious{position:absolute; bottom:0px; left:0; color:#444;} + #cboxNext{position:absolute; bottom:0px; left:63px; color:#444;} + #cboxClose{position:absolute; bottom:0; right:0; display:block; color:#444;} + +/* + The following fixes a problem where IE7 and IE8 replace a PNG's alpha transparency with a black fill + when an alpha filter (opacity change) is set on the element or ancestor element. This style is not applied to or needed in IE9. + See: http://jacklmoore.com/notes/ie-transparency-problems/ +*/ +.cboxIE #cboxTopLeft, +.cboxIE #cboxTopCenter, +.cboxIE #cboxTopRight, +.cboxIE #cboxBottomLeft, +.cboxIE #cboxBottomCenter, +.cboxIE #cboxBottomRight, +.cboxIE #cboxMiddleLeft, +.cboxIE #cboxMiddleRight { + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr=#00FFFFFF,endColorstr=#00FFFFFF); +}
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padding:0 10px;} + a:link, a:visited{text-decoration:none; color:#416CE5; border-bottom:1px solid #416CE5;} + h2{font-size:13px; margin:15px 0 0 0;} + </style> + <link rel="stylesheet" href="colorbox.css" /> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> + <script src="../jquery.colorbox.js"></script> + <script> + $(document).ready(function(){ + //Examples of how to assign the Colorbox event to elements + $(".group1").colorbox({rel:'group1'}); + $(".group2").colorbox({rel:'group2', transition:"fade"}); + $(".group3").colorbox({rel:'group3', transition:"none", width:"75%", height:"75%"}); + $(".group4").colorbox({rel:'group4', slideshow:true}); + $(".ajax").colorbox(); + $(".youtube").colorbox({iframe:true, innerWidth:425, innerHeight:344}); + $(".vimeo").colorbox({iframe:true, innerWidth:500, innerHeight:409}); + $(".iframe").colorbox({iframe:true, width:"80%", height:"80%"}); + $(".inline").colorbox({inline:true, width:"50%"}); + $(".callbacks").colorbox({ + onOpen:function(){ alert('onOpen: colorbox is about to open'); }, + onLoad:function(){ alert('onLoad: colorbox has started to load the targeted content'); }, + onComplete:function(){ alert('onComplete: colorbox has displayed the loaded content'); }, + onCleanup:function(){ alert('onCleanup: colorbox has begun the close process'); }, + onClosed:function(){ alert('onClosed: colorbox has completely closed'); } + }); + + $('.non-retina').colorbox({rel:'group5', transition:'none'}) + $('.retina').colorbox({rel:'group5', transition:'none', retinaImage:true, retinaUrl:true}); + + //Example of preserving a JavaScript event for inline calls. + $("#click").click(function(){ + $('#click').css({"background-color":"#f00", "color":"#fff", "cursor":"inherit"}).text("Open this window again and this message will still be here."); + return false; + }); + }); + </script> + </head> + <body> + <h1>Colorbox Demonstration</h1> + <h2>Elastic Transition</h2> + <p><a class="group1" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group1" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group1" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Fade Transition</h2> + <p><a class="group2" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee">Grouped Photo 1</a></p> + <p><a class="group2" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group2" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>No Transition + fixed width and height (75% of screen size)</h2> + <p><a class="group3" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group3" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group3" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Slideshow</h2> + <p><a class="group4" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group4" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group4" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Other Content Types</h2> + <p><a class='ajax' href="../content/ajax.html" title="Homer Defined">Outside HTML (Ajax)</a></p> + <p><a class='youtube' href="http://www.youtube.com/embed/617ANIA5Rqs?rel=0&wmode=transparent" title="The Knife: We Share Our Mother's Health">Flash / Video (Iframe/Direct Link To YouTube)</a></p> + <p><a class='vimeo' href="http://player.vimeo.com/video/2285902" title="Röyksopp: Remind Me">Flash / Video (Iframe/Direct Link To Vimeo)</a></p> + <p><a class='iframe' href="http://wikipedia.com">Outside Webpage (Iframe)</a></p> + <p><a class='inline' href="#inline_content">Inline HTML</a></p> + + <h2>Demonstration of using callbacks</h2> + <p><a class='callbacks' href="../content/marylou.jpg" title="Marylou on Cumberland Island">Example with alerts</a>. Callbacks and event-hooks allow users to extend functionality without having to rewrite parts of the plugin.</p> + + + <h2>Retina Images</h2> + <p><a class="retina" href="../content/daisy.jpg" title="Retina">Retina</a></p> + <p><a class="non-retina" href="../content/daisy.jpg" title="Non-Retina">Non-Retina</a></p> + + <!-- This contains the hidden content for inline calls --> + <div style='display:none'> + <div id='inline_content' style='padding:10px; background:#fff;'> + <p><strong>This content comes from a hidden element on this page.</strong></p> + <p>The inline option preserves bound JavaScript events and changes, and it puts the content back where it came from when it is closed.</p> + <p><a id="click" href="#" style='padding:5px; background:#ccc;'>Click me, it will be preserved!</a></p> + + <p><strong>If you try to open a new Colorbox while it is already open, it will update itself with the new content.</strong></p> + <p>Updating Content Example:<br /> + <a class="ajax" href="../content/ajax.html">Click here to load new content</a></p> + </div> + </div> + </body> +</html>
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padding:0 10px;} + a:link, a:visited{text-decoration:none; color:#416CE5; border-bottom:1px solid #416CE5;} + h2{font-size:13px; margin:15px 0 0 0;} + </style> + <link rel="stylesheet" href="colorbox.css" /> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> + <script src="../jquery.colorbox.js"></script> + <script> + $(document).ready(function(){ + //Examples of how to assign the Colorbox event to elements + $(".group1").colorbox({rel:'group1'}); + $(".group2").colorbox({rel:'group2', transition:"fade"}); + $(".group3").colorbox({rel:'group3', transition:"none", width:"75%", height:"75%"}); + $(".group4").colorbox({rel:'group4', slideshow:true}); + $(".ajax").colorbox(); + $(".youtube").colorbox({iframe:true, innerWidth:425, innerHeight:344}); + $(".vimeo").colorbox({iframe:true, innerWidth:500, innerHeight:409}); + $(".iframe").colorbox({iframe:true, width:"80%", height:"80%"}); + $(".inline").colorbox({inline:true, width:"50%"}); + $(".callbacks").colorbox({ + onOpen:function(){ alert('onOpen: colorbox is about to open'); }, + onLoad:function(){ alert('onLoad: colorbox has started to load the targeted content'); }, + onComplete:function(){ alert('onComplete: colorbox has displayed the loaded content'); }, + onCleanup:function(){ alert('onCleanup: colorbox has begun the close process'); }, + onClosed:function(){ alert('onClosed: colorbox has completely closed'); } + }); + + $('.non-retina').colorbox({rel:'group5', transition:'none'}) + $('.retina').colorbox({rel:'group5', transition:'none', retinaImage:true, retinaUrl:true}); + + //Example of preserving a JavaScript event for inline calls. + $("#click").click(function(){ + $('#click').css({"background-color":"#f00", "color":"#fff", "cursor":"inherit"}).text("Open this window again and this message will still be here."); + return false; + }); + }); + </script> + </head> + <body> + <h1>Colorbox Demonstration</h1> + <h2>Elastic Transition</h2> + <p><a class="group1" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group1" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group1" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Fade Transition</h2> + <p><a class="group2" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee">Grouped Photo 1</a></p> + <p><a class="group2" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group2" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>No Transition + fixed width and height (75% of screen size)</h2> + <p><a class="group3" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group3" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group3" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Slideshow</h2> + <p><a class="group4" href="../content/ohoopee1.jpg" title="Me and my grandfather on the Ohoopee.">Grouped Photo 1</a></p> + <p><a class="group4" href="../content/ohoopee2.jpg" title="On the Ohoopee as a child">Grouped Photo 2</a></p> + <p><a class="group4" href="../content/ohoopee3.jpg" title="On the Ohoopee as an adult">Grouped Photo 3</a></p> + + <h2>Other Content Types</h2> + <p><a class='ajax' href="../content/ajax.html" title="Homer Defined">Outside HTML (Ajax)</a></p> + <p><a class='youtube' href="http://www.youtube.com/embed/617ANIA5Rqs?rel=0&wmode=transparent" title="The Knife: We Share Our Mother's Health">Flash / Video (Iframe/Direct Link To YouTube)</a></p> + <p><a class='vimeo' href="http://player.vimeo.com/video/2285902" title="Röyksopp: Remind Me">Flash / Video (Iframe/Direct Link To Vimeo)</a></p> + <p><a class='iframe' href="http://wikipedia.com">Outside Webpage (Iframe)</a></p> + <p><a class='inline' href="#inline_content">Inline HTML</a></p> + + <h2>Demonstration of using callbacks</h2> + <p><a class='callbacks' href="../content/marylou.jpg" title="Marylou on Cumberland Island">Example with alerts</a>. Callbacks and event-hooks allow users to extend functionality without having to rewrite parts of the plugin.</p> + + + <h2>Retina Images</h2> + <p><a class="retina" href="../content/daisy.jpg" title="Retina">Retina</a></p> + <p><a class="non-retina" href="../content/daisy.jpg" title="Non-Retina">Non-Retina</a></p> + + <!-- This contains the hidden content for inline calls --> + <div style='display:none'> + <div id='inline_content' style='padding:10px; background:#fff;'> + <p><strong>This content comes from a hidden element on this page.</strong></p> + <p>The inline option preserves bound JavaScript events and changes, and it puts the content back where it came from when it is closed.</p> + <p><a id="click" href="#" style='padding:5px; background:#ccc;'>Click me, it will be preserved!</a></p> + + <p><strong>If you try to open a new Colorbox while it is already open, it will update itself with the new content.</strong></p> + <p>Updating Content Example:<br /> + <a class="ajax" href="../content/ajax.html">Click here to load new content</a></p> + </div> + </div> + </body> +</html>
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ar.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ar.js new file mode 100644 index 00000000..6c4228cd --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ar.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Arabic (ar) + translated by: A.Rhman Sayes +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "الصورة {current} من {total}", + previous: "السابق", + next: "التالي", + close: "إغلاق", + xhrError: "Øدث خطأ أثناء تØميل المØتوى.", + imgError: "Øدث خطأ أثناء تØميل الصورة.", + slideshowStart: "تشغيل العرض", + slideshowStop: "إيقا٠العرض" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-bg b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-bg new file mode 100644 index 00000000..de7e4a1d --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-bg @@ -0,0 +1,16 @@ +/* + jQuery Colorbox language configuration + language: Bulgarian (bg) + translated by: Marian M.Bida + site: webmax.bg +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "изображение {current} от {total}", + previous: "предишна", + next: "Ñледваща", + close: "затвори", + xhrError: "ÐеуÑпешно зареждане на Ñъдържанието.", + imgError: "ÐеуÑпешно зареждане на изображението.", + slideshowStart: "пуÑни Ñлайд-шоу", + slideshowStop: "Ñпри Ñлайд-шоу" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-cs.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-cs.js new file mode 100644 index 00000000..feda8059 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-cs.js @@ -0,0 +1,14 @@ +/* + jQuery Colorbox language configuration + language: Czech (cs) + translated by: Filip Novak + site: mame.napilno.cz/filip-novak +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "{current}. obrázek z {total}", + previous: "PÅ™edchozÃ", + next: "NásledujÃcÃ", + close: "ZavÅ™Ãt", + xhrError: "Obsah se nepodaÅ™ilo naÄÃst.", + imgError: "Obrázek se nepodaÅ™ilo naÄÃst." +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-da.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-da.js new file mode 100644 index 00000000..676fffed --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-da.js @@ -0,0 +1,16 @@ +/* + jQuery Colorbox language configuration + language: Danish (da) + translated by: danieljuhl + site: danieljuhl.dk +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Billede {current} af {total}", + previous: "Forrige", + next: "Næste", + close: "Luk", + xhrError: "Indholdet fejlede i indlæsningen.", + imgError: "Billedet fejlede i indlæsningen.", + slideshowStart: "Start slideshow", + slideshowStop: "Stop slideshow" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-de.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-de.js new file mode 100644 index 00000000..d489379b --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-de.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: German (de) + translated by: wallenium +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Bild {current} von {total}", + previous: "Zurück", + next: "Vor", + close: "Schließen", + xhrError: "Dieser Inhalt konnte nicht geladen werden.", + imgError: "Dieses Bild konnte nicht geladen werden.", + slideshowStart: "Slideshow starten", + slideshowStop: "Slideshow anhalten" +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-es.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-es.js new file mode 100644 index 00000000..11296fc9 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-es.js @@ -0,0 +1,13 @@ +/* + jQuery Colorbox language configuration + language: Spanish (es) + translated by: migolo +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Imagen {current} de {total}", + previous: "Anterior", + next: "Siguiente", + close: "Cerrar", + xhrError: "Error en la carga del contenido.", + imgError: "Error en la carga de la imagen." +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fa.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fa.js new file mode 100644 index 00000000..32869a4c --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fa.js @@ -0,0 +1,18 @@ +/*
+ jQuery Colorbox language configuration
+ language: Persian (Farsi)
+ translated by: Mahdi Jaberzadeh Ansari (MJZSoft)
+ site: www.mjzsoft.ir
+ email: mahdijaberzadehansari (at) yahoo.co.uk
+ Please note : Persian language is right to left like arabic.
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "تصویر {current} از {total}",
+ previous: "قبلی",
+ next: "بعدی",
+ close: "بستن",
+ xhrError: "متاسÙانه Ù…Øتویات مورد نظر قابل نمایش نیست.",
+ imgError: "متاسÙانه بارگذاری این عکس با مشکل مواجه شده است.",
+ slideshowStart: "آغاز نمایش خودکار",
+ slideshowStop: "توق٠نمایش خودکار"
+});
diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fi.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fi.js new file mode 100644 index 00000000..ac03fe02 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fi.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Finnish (fi) + translated by: Mikko +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Kuva {current} / {total}", + previous: "Edellinen", + next: "Seuraava", + close: "Sulje", + xhrError: "Sisällön lataaminen epäonnistui.", + imgError: "Kuvan lataaminen epäonnistui.", + slideshowStart: "Aloita kuvaesitys.", + slideshowStop: "Lopeta kuvaesitys." +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fr.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fr.js new file mode 100644 index 00000000..f76352bd --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-fr.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: French (fr) + translated by: oaubert +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "image {current} sur {total}", + previous: "précédente", + next: "suivante", + close: "fermer", + xhrError: "Impossible de charger ce contenu.", + imgError: "Impossible de charger cette image.", + slideshowStart: "démarrer la présentation", + slideshowStop: "arrêter la présentation" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hr.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hr.js new file mode 100644 index 00000000..7eb62bec --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hr.js @@ -0,0 +1,15 @@ +/*
+ jQuery Colorbox language configuration
+ language: Croatian (hr)
+ translated by: Mladen Bicanic (base.hr)
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "Slika {current} od {total}",
+ previous: "Prethodna",
+ next: "Sljedeća",
+ close: "Zatvori",
+ xhrError: "NeuspjeÅ¡no uÄitavanje sadržaja.",
+ imgError: "NeuspjeÅ¡no uÄitavanje slike.",
+ slideshowStart: "Pokreni slideshow",
+ slideshowStop: "Zaustavi slideshow"
+});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hu.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hu.js new file mode 100644 index 00000000..72e9d36b --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-hu.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Hungarian (hu) + translated by: kovadani +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "{current}/{total} kép", + previous: "ElÅ‘zÅ‘", + next: "KövetkezÅ‘", + close: "Bezár", + xhrError: "A tartalmat nem sikerült betölteni.", + imgError: "A képet nem sikerült betölteni.", + slideshowStart: "DiavetÃtés indÃtása", + slideshowStop: "DiavetÃtés leállÃtása" +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-it.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-it.js new file mode 100644 index 00000000..2a4af645 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-it.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Italian (it) + translated by: maur8ino +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Immagine {current} di {total}", + previous: "Precedente", + next: "Successiva", + close: "Chiudi", + xhrError: "Errore nel caricamento del contenuto.", + imgError: "Errore nel caricamento dell'immagine.", + slideshowStart: "Inizia la presentazione", + slideshowStop: "Termina la presentazione" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ja.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ja.js new file mode 100644 index 00000000..5480de33 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ja.js @@ -0,0 +1,15 @@ +/*
+ jQuery Colorbox language configuration
+ language: Japanaese (ja)
+ translated by: Hajime Fujimoto
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "{total}æžšä¸{current}æžšç›®",
+ previous: "å‰",
+ next: "次",
+ close: "é–‰ã˜ã‚‹",
+ xhrError: "コンテンツã®èªã¿è¾¼ã¿ã«å¤±æ•—ã—ã¾ã—ãŸ",
+ imgError: "ç”»åƒã®èªã¿è¾¼ã¿ã«å¤±æ•—ã—ã¾ã—ãŸ",
+ slideshowStart: "スライドショー開始",
+ slideshowStop: "スライドショー終了"
+});
diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-kr.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-kr.js new file mode 100644 index 00000000..b95702bc --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-kr.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Korean (kr) + translated by: lunareffect +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "ì´ {total} 중 {current}", + previous: "ì´ì „", + next: "다ìŒ", + close: "닫기", + xhrError: "컨í…ì¸ ë¥¼ 불러오는 ë° ì‹¤íŒ¨í–ˆìŠµë‹ˆë‹¤.", + imgError: "ì´ë¯¸ì§€ë¥¼ 불러오는 ë° ì‹¤íŒ¨í–ˆìŠµë‹ˆë‹¤.", + slideshowStart: "슬ë¼ì´ë“œì‡¼ 시작", + slideshowStop: "슬ë¼ì´ë“œì‡¼ 중지" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-lv.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-lv.js new file mode 100644 index 00000000..e376366b --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-lv.js @@ -0,0 +1,16 @@ +/* + jQuery Colorbox language configuration + language: Latvian (lv) + translated by: Matiss Roberts Treinis + site: x0.lv +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "attÄ“ls {current} no {total}", + previous: "iepriekÅ¡Ä“jais", + next: "nÄkamais", + close: "aizvÄ“rt", + xhrError: "NeizdevÄs ielÄdÄ“t saturu.", + imgError: "NeizdevÄs ielÄdÄ“t attÄ“lu.", + slideshowStart: "sÄkt slaidrÄdi", + slideshowStop: "apturÄ“t slaidrÄdi" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-nl.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-nl.js new file mode 100644 index 00000000..dfc658ec --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-nl.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Dutch (nl) + translated by: barryvdh +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Afbeelding {current} van {total}", + previous: "Vorige", + next: "Volgende", + close: "Sluiten", + xhrError: "Deze inhoud kan niet geladen worden.", + imgError: "Deze afbeelding kan niet geladen worden.", + slideshowStart: "Diashow starten", + slideshowStop: "Diashow stoppen" +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-no.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-no.js new file mode 100644 index 00000000..277c5d3f --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-no.js @@ -0,0 +1,16 @@ +/* + jQuery Colorbox language configuration + language: Norwegian (no) + translated by: lars-erik + site: markedspartner.no +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Bilde {current} av {total}", + previous: "Forrige", + next: "Neste", + close: "Lukk", + xhrError: "Feil ved lasting av innhold.", + imgError: "Feil ved lasting av bilde.", + slideshowStart: "Start lysbildefremvisning", + slideshowStop: "Stopp lysbildefremvisning" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pl.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pl.js new file mode 100644 index 00000000..1c04dae1 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pl.js @@ -0,0 +1,16 @@ +/*
+ jQuery Colorbox language configuration
+ language: Polski (pl)
+ translated by: Tomasz Wasiński
+ site: 2bevisible.pl
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "{current}. obrazek z {total}",
+ previous: "Poprzedni",
+ next: "Następny",
+ close: "Zamknij",
+ xhrError: "Nie udało się załadować treści.",
+ imgError: "Nie udało się załadować obrazka.",
+ slideshowStart: "rozpocznij pokaz slajdów",
+ slideshowStop: "zatrzymaj pokaz slajdów"
+});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pt-br.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pt-br.js new file mode 100644 index 00000000..73e948b7 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-pt-br.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Brazilian Portuguese (pt-br) + translated by: ReinaldoMT +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Imagem {current} de {total}", + previous: "Anterior", + next: "Próxima", + close: "Fechar", + slideshowStart: "iniciar apresentação de slides", + slideshowStop: "parar apresentação de slides", + xhrError: "Erro ao carregar o conteúdo.", + imgError: "Erro ao carregar a imagem." +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ro.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ro.js new file mode 100644 index 00000000..0a461e28 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ro.js @@ -0,0 +1,15 @@ +/* + jQuery Colorbox language configuration + language: Romanian (ro) + translated by: shurub3l +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "imagine {current} din {total}", + previous: "precedenta", + next: "următoarea", + close: "închideți", + xhrError: "Acest conținut nu poate fi încărcat.", + imgError: "Această imagine nu poate fi încărcată", + slideshowStart: "începeți prezentarea (slideshow)", + slideshowStop: "opriți prezentarea (slideshow)" +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ru.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ru.js new file mode 100644 index 00000000..1d88b8cd --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-ru.js @@ -0,0 +1,16 @@ +/*
+ jQuery Colorbox language configuration
+ language: Russian (ru)
+ translated by: Marfa
+ site: themarfa.name
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "изображение {current} из {total}",
+ previous: "назад",
+ next: "вперёд",
+ close: "закрыть",
+ xhrError: "Ðе удалоÑÑŒ загрузить Ñодержимое.",
+ imgError: "Ðе удалоÑÑŒ загрузить изображение.",
+ slideshowStart: "начать Ñлайд-шоу",
+ slideshowStop: "оÑтановить Ñлайд-шоу"
+});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-sk.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-sk.js new file mode 100644 index 00000000..8ef1c2ec --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-sk.js @@ -0,0 +1,13 @@ +/* + jQuery Colorbox language configuration + language: Slovak (sk) + translated by: Jaroslav Kostal +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "{current}. obrázok z {total}", + previous: "Predchádzajúci", + next: "Následujúci", + close: "ZatvoriÅ¥", + xhrError: "Obsah sa nepodarilo naÄÃtaÅ¥.", + imgError: "Obrázok sa nepodarilo naÄÃtaÅ¥." +});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-tr.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-tr.js new file mode 100644 index 00000000..d467c2ef --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-tr.js @@ -0,0 +1,19 @@ +/* + jQuery Colorbox language configuration + language: Turkish (tr) + translated by: Caner ÖNCEL + site: egonomik.com + + edited by: Sinan Eldem + www.sinaneldem.com.tr +*/ +jQuery.extend(jQuery.colorbox.settings, { + current: "Görsel {current} / {total}", + previous: "Önceki", + next: "Sonraki", + close: "Kapat", + xhrError: "İçerik yüklenirken hata meydana geldi.", + imgError: "Resim yüklenirken hata meydana geldi.", + slideshowStart: "Slaytı Başlat", + slideshowStop: "Slaytı Durdur" +}); diff --git a/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-zh-CN.js b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-zh-CN.js new file mode 100644 index 00000000..770d8eac --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/i18n/jquery.colorbox-zh-CN.js @@ -0,0 +1,15 @@ +/*
+ jQuery Colorbox language configuration
+ language: Chinese Simplified (zh-CN)
+ translated by: zhao weiming
+*/
+jQuery.extend(jQuery.colorbox.settings, {
+ current: "当å‰å›¾åƒ {current} 总共 {total}",
+ previous: "å‰ä¸€é¡µ",
+ next: "åŽä¸€é¡µ",
+ close: "å…³é—",
+ xhrError: "æ¤å†…å®¹æ— æ³•åŠ è½½",
+ imgError: "æ¤å›¾ç‰‡æ— æ³•åŠ è½½",
+ slideshowStart: "开始æ’放幻ç¯ç‰‡",
+ slideshowStop: "åœæ¢æ’放幻ç¯ç‰‡"
+});
\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/jquery.colorbox-min.js b/wqflask/wqflask/static/packages/colorbox/jquery.colorbox-min.js new file mode 100644 index 00000000..6e79ec37 --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/jquery.colorbox-min.js @@ -0,0 +1,6 @@ +/*! + jQuery Colorbox v1.4.15 - 2013-04-22 + (c) 2013 Jack Moore - jacklmoore.com/colorbox + license: http://www.opensource.org/licenses/mit-license.php +*/ +(function(t,e,i){function o(i,o,n){var r=e.createElement(i);return o&&(r.id=te+o),n&&(r.style.cssText=n),t(r)}function n(){return i.innerHeight?i.innerHeight:t(i).height()}function r(t){var e=H.length,i=(j+t)%e;return 0>i?e+i:i}function h(t,e){return Math.round((/%/.test(t)?("x"===e?E.width():n())/100:1)*parseInt(t,10))}function l(t,e){return t.photo||t.photoRegex.test(e)}function s(t,e){return t.retinaUrl&&i.devicePixelRatio>1?e.replace(t.photoRegex,t.retinaSuffix):e}function a(t){"contains"in 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\ No newline at end of file diff --git a/wqflask/wqflask/static/packages/colorbox/jquery.colorbox.js b/wqflask/wqflask/static/packages/colorbox/jquery.colorbox.js new file mode 100644 index 00000000..6d08f33f --- /dev/null +++ b/wqflask/wqflask/static/packages/colorbox/jquery.colorbox.js @@ -0,0 +1,1026 @@ +/*! + jQuery Colorbox v1.4.15 - 2013-04-22 + (c) 2013 Jack Moore - jacklmoore.com/colorbox + license: http://www.opensource.org/licenses/mit-license.php +*/ +(function ($, document, window) { + var + // Default settings object. + // See http://jacklmoore.com/colorbox for details. + defaults = { + transition: "elastic", + speed: 300, + fadeOut: 300, + width: false, + initialWidth: "600", + innerWidth: false, + maxWidth: false, + height: false, + initialHeight: "450", + innerHeight: false, + maxHeight: false, + scalePhotos: true, + scrolling: true, + inline: false, + html: false, + iframe: false, + fastIframe: true, + photo: false, + href: false, + title: false, + rel: false, + opacity: 0.9, + preloading: true, + className: false, + + // alternate image paths for high-res displays + retinaImage: false, + retinaUrl: false, + retinaSuffix: '@2x.$1', + + // internationalization + current: "image {current} of {total}", + previous: "previous", + next: "next", + close: "close", + xhrError: "This content failed to load.", + imgError: "This image failed to load.", + + open: false, + returnFocus: true, + reposition: true, + loop: true, + slideshow: false, + slideshowAuto: true, + slideshowSpeed: 2500, + slideshowStart: "start slideshow", + slideshowStop: "stop slideshow", + photoRegex: /\.(gif|png|jp(e|g|eg)|bmp|ico|webp)((#|\?).*)?$/i, + + onOpen: false, + onLoad: false, + onComplete: false, + onCleanup: false, + onClosed: false, + overlayClose: true, + escKey: true, + arrowKey: true, + top: false, + bottom: false, + left: false, + right: false, + fixed: false, + data: undefined + }, + + // Abstracting the HTML and event identifiers for easy rebranding + colorbox = 'colorbox', + prefix = 'cbox', + boxElement = prefix + 'Element', + + // Events + event_open = prefix + '_open', + event_load = prefix + '_load', + event_complete = prefix + '_complete', + event_cleanup = prefix + '_cleanup', + event_closed = prefix + '_closed', + event_purge = prefix + '_purge', + + // Cached jQuery Object Variables + $overlay, + $box, + $wrap, + $content, + $topBorder, + $leftBorder, + $rightBorder, + $bottomBorder, + $related, + $window, + $loaded, + $loadingBay, + $loadingOverlay, + $title, + $current, + $slideshow, + $next, + $prev, + $close, + $groupControls, + $events = $('<a/>'), + + // Variables for cached values or use across multiple functions + settings, + interfaceHeight, + interfaceWidth, + loadedHeight, + loadedWidth, + element, + index, + photo, + open, + active, + closing, + loadingTimer, + publicMethod, + div = "div", + className, + requests = 0, + init; + + // **************** + // HELPER FUNCTIONS + // **************** + + // Convenience function for creating new jQuery objects + function $tag(tag, id, css) { + var element = document.createElement(tag); + + if (id) { + element.id = prefix + id; + } + + if (css) { + element.style.cssText = css; + } + + return $(element); + } + + // Get the window height using innerHeight when available to avoid an issue with iOS + // http://bugs.jquery.com/ticket/6724 + function winheight() { + return window.innerHeight ? window.innerHeight : $(window).height(); + } + + // Determine the next and previous members in a group. + function getIndex(increment) { + var + max = $related.length, + newIndex = (index + increment) % max; + + return (newIndex < 0) ? max + newIndex : newIndex; + } + + // Convert '%' and 'px' values to integers + function setSize(size, dimension) { + return Math.round((/%/.test(size) ? ((dimension === 'x' ? $window.width() : winheight()) / 100) : 1) * parseInt(size, 10)); + } + + // Checks an href to see if it is a photo. + // There is a force photo option (photo: true) for hrefs that cannot be matched by the regex. + function isImage(settings, url) { + return settings.photo || settings.photoRegex.test(url); + } + + function retinaUrl(settings, url) { + return settings.retinaUrl && window.devicePixelRatio > 1 ? url.replace(settings.photoRegex, settings.retinaSuffix) : url; + } + + function trapFocus(e) { + if ('contains' in $box[0] && !$box[0].contains(e.target)) { + e.stopPropagation(); + $box.focus(); + } + } + + // Assigns function results to their respective properties + function makeSettings() { + var i, + data = $.data(element, colorbox); + + if (data == null) { + settings = $.extend({}, defaults); + if (console && console.log) { + console.log('Error: cboxElement missing settings object'); + } + } else { + settings = $.extend({}, data); + } + + for (i in settings) { + if ($.isFunction(settings[i]) && i.slice(0, 2) !== 'on') { // checks to make sure the function isn't one of the callbacks, they will be handled at the appropriate time. + settings[i] = settings[i].call(element); + } + } + + settings.rel = settings.rel || element.rel || $(element).data('rel') || 'nofollow'; + settings.href = settings.href || $(element).attr('href'); + settings.title = settings.title || element.title; + + if (typeof settings.href === "string") { + settings.href = $.trim(settings.href); + } + } + + function trigger(event, callback) { + // for external use + $(document).trigger(event); + + // for internal use + $events.trigger(event); + + if ($.isFunction(callback)) { + callback.call(element); + } + } + + // Slideshow functionality + function slideshow() { + var + timeOut, + className = prefix + "Slideshow_", + click = "click." + prefix, + clear, + set, + start, + stop; + + if (settings.slideshow && $related[1]) { + clear = function () { + clearTimeout(timeOut); + }; + + set = function () { + if (settings.loop || $related[index + 1]) { + timeOut = setTimeout(publicMethod.next, settings.slideshowSpeed); + } + }; + + start = function () { + $slideshow + .html(settings.slideshowStop) + .unbind(click) + .one(click, stop); + + $events + .bind(event_complete, set) + .bind(event_load, clear) + .bind(event_cleanup, stop); + + $box.removeClass(className + "off").addClass(className + "on"); + }; + + stop = function () { + clear(); + + $events + .unbind(event_complete, set) + .unbind(event_load, clear) + .unbind(event_cleanup, stop); + + $slideshow + .html(settings.slideshowStart) + .unbind(click) + .one(click, function () { + publicMethod.next(); + start(); + }); + + $box.removeClass(className + "on").addClass(className + "off"); + }; + + if (settings.slideshowAuto) { + start(); + } else { + stop(); + } + } else { + $box.removeClass(className + "off " + className + "on"); + } + } + + function launch(target) { + if (!closing) { + + element = target; + + makeSettings(); + + $related = $(element); + + index = 0; + + if (settings.rel !== 'nofollow') { + $related = $('.' + boxElement).filter(function () { + var data = $.data(this, colorbox), + relRelated; + + if (data) { + relRelated = $(this).data('rel') || data.rel || this.rel; + } + + return (relRelated === settings.rel); + }); + index = $related.index(element); + + // Check direct calls to Colorbox. + if (index === -1) { + $related = $related.add(element); + index = $related.length - 1; + } + } + + $overlay.css({ + opacity: parseFloat(settings.opacity), + cursor: settings.overlayClose ? "pointer" : "auto", + visibility: 'visible' + }).show(); + + + if (className) { + $box.add($overlay).removeClass(className); + } + if (settings.className) { + $box.add($overlay).addClass(settings.className); + } + className = settings.className; + + $close.html(settings.close).show(); + + if (!open) { + open = active = true; // Prevents the page-change action from queuing up if the visitor holds down the left or right keys. + + // Show colorbox so the sizes can be calculated in older versions of jQuery + $box.css({visibility:'hidden', display:'block'}); + + $loaded = $tag(div, 'LoadedContent', 'width:0; height:0; overflow:hidden').appendTo($content); + + // Cache values needed for size calculations + interfaceHeight = $topBorder.height() + $bottomBorder.height() + $content.outerHeight(true) - $content.height(); + interfaceWidth = $leftBorder.width() + $rightBorder.width() + $content.outerWidth(true) - $content.width(); + loadedHeight = $loaded.outerHeight(true); + loadedWidth = $loaded.outerWidth(true); + + + // Opens inital empty Colorbox prior to content being loaded. + settings.w = setSize(settings.initialWidth, 'x'); + settings.h = setSize(settings.initialHeight, 'y'); + publicMethod.position(); + + slideshow(); + + trigger(event_open, settings.onOpen); + + $groupControls.add($title).hide(); + + $box.focus(); + + // Confine focus to the modal + // Uses event capturing that is not supported in IE8- + if (document.addEventListener) { + + document.addEventListener('focus', trapFocus, true); + + $events.one(event_closed, function () { + document.removeEventListener('focus', trapFocus, true); + }); + } + + // Return focus on closing + if (settings.returnFocus) { + $events.one(event_closed, function () { + $(element).focus(); + }); + } + } + + load(); + } + } + + // Colorbox's markup needs to be added to the DOM prior to being called + // so that the browser will go ahead and load the CSS background images. + function appendHTML() { + if (!$box && document.body) { + init = false; + $window = $(window); + $box = $tag(div).attr({ + id: colorbox, + 'class': $.support.opacity === false ? prefix + 'IE' : '', // class for optional IE8 & lower targeted CSS. + role: 'dialog', + tabindex: '-1' + }).hide(); + $overlay = $tag(div, "Overlay").hide(); + $loadingOverlay = $tag(div, "LoadingOverlay").add($tag(div, "LoadingGraphic")); + $wrap = $tag(div, "Wrapper"); + $content = $tag(div, "Content").append( + $title = $tag(div, "Title"), + $current = $tag(div, "Current"), + $prev = $('<button type="button"/>').attr({id:prefix+'Previous'}), + $next = $('<button type="button"/>').attr({id:prefix+'Next'}), + $slideshow = $tag('button', "Slideshow"), + $loadingOverlay, + $close = $('<button type="button"/>').attr({id:prefix+'Close'}) + ); + + $wrap.append( // The 3x3 Grid that makes up Colorbox + $tag(div).append( + $tag(div, "TopLeft"), + $topBorder = $tag(div, "TopCenter"), + $tag(div, "TopRight") + ), + $tag(div, false, 'clear:left').append( + $leftBorder = $tag(div, "MiddleLeft"), + $content, + $rightBorder = $tag(div, "MiddleRight") + ), + $tag(div, false, 'clear:left').append( + $tag(div, "BottomLeft"), + $bottomBorder = $tag(div, "BottomCenter"), + $tag(div, "BottomRight") + ) + ).find('div div').css({'float': 'left'}); + + $loadingBay = $tag(div, false, 'position:absolute; width:9999px; visibility:hidden; display:none'); + + $groupControls = $next.add($prev).add($current).add($slideshow); + + $(document.body).append($overlay, $box.append($wrap, $loadingBay)); + } + } + + // Add Colorbox's event bindings + function addBindings() { + function clickHandler(e) { + // ignore non-left-mouse-clicks and clicks modified with ctrl / command, shift, or alt. + // See: http://jacklmoore.com/notes/click-events/ + if (!(e.which > 1 || e.shiftKey || e.altKey || e.metaKey || e.control)) { + e.preventDefault(); + launch(this); + } + } + + if ($box) { + if (!init) { + init = true; + + // Anonymous functions here keep the public method from being cached, thereby allowing them to be redefined on the fly. + $next.click(function () { + publicMethod.next(); + }); + $prev.click(function () { + publicMethod.prev(); + }); + $close.click(function () { + publicMethod.close(); + }); + $overlay.click(function () { + if (settings.overlayClose) { + publicMethod.close(); + } + }); + + // Key Bindings + $(document).bind('keydown.' + prefix, function (e) { + var key = e.keyCode; + if (open && settings.escKey && key === 27) { + e.preventDefault(); + publicMethod.close(); + } + if (open && settings.arrowKey && $related[1] && !e.altKey) { + if (key === 37) { + e.preventDefault(); + $prev.click(); + } else if (key === 39) { + e.preventDefault(); + $next.click(); + } + } + }); + + if ($.isFunction($.fn.on)) { + // For jQuery 1.7+ + $(document).on('click.'+prefix, '.'+boxElement, clickHandler); + } else { + // For jQuery 1.3.x -> 1.6.x + // This code is never reached in jQuery 1.9, so do not contact me about 'live' being removed. + // This is not here for jQuery 1.9, it's here for legacy users. + $('.'+boxElement).live('click.'+prefix, clickHandler); + } + } + return true; + } + return false; + } + + // Don't do anything if Colorbox already exists. + if ($.colorbox) { + return; + } + + // Append the HTML when the DOM loads + $(appendHTML); + + + // **************** + // PUBLIC FUNCTIONS + // Usage format: $.colorbox.close(); + // Usage from within an iframe: parent.jQuery.colorbox.close(); + // **************** + + publicMethod = $.fn[colorbox] = $[colorbox] = function (options, callback) { + var $this = this; + + options = options || {}; + + appendHTML(); + + if (addBindings()) { + if ($.isFunction($this)) { // assume a call to $.colorbox + $this = $('<a/>'); + options.open = true; + } else if (!$this[0]) { // colorbox being applied to empty collection + return $this; + } + + if (callback) { + options.onComplete = callback; + } + + $this.each(function () { + $.data(this, colorbox, $.extend({}, $.data(this, colorbox) || defaults, options)); + }).addClass(boxElement); + + if (($.isFunction(options.open) && options.open.call($this)) || options.open) { + launch($this[0]); + } + } + + return $this; + }; + + publicMethod.position = function (speed, loadedCallback) { + var + css, + top = 0, + left = 0, + offset = $box.offset(), + scrollTop, + scrollLeft; + + $window.unbind('resize.' + prefix); + + // remove the modal so that it doesn't influence the document width/height + $box.css({top: -9e4, left: -9e4}); + + scrollTop = $window.scrollTop(); + scrollLeft = $window.scrollLeft(); + + if (settings.fixed) { + offset.top -= scrollTop; + offset.left -= scrollLeft; + $box.css({position: 'fixed'}); + } else { + top = scrollTop; + left = scrollLeft; + $box.css({position: 'absolute'}); + } + + // keeps the top and left positions within the browser's viewport. + if (settings.right !== false) { + left += Math.max($window.width() - settings.w - loadedWidth - interfaceWidth - setSize(settings.right, 'x'), 0); + } else if (settings.left !== false) { + left += setSize(settings.left, 'x'); + } else { + left += Math.round(Math.max($window.width() - settings.w - loadedWidth - interfaceWidth, 0) / 2); + } + + if (settings.bottom !== false) { + top += Math.max(winheight() - settings.h - loadedHeight - interfaceHeight - setSize(settings.bottom, 'y'), 0); + } else if (settings.top !== false) { + top += setSize(settings.top, 'y'); + } else { + top += Math.round(Math.max(winheight() - settings.h - loadedHeight - interfaceHeight, 0) / 2); + } + + $box.css({top: offset.top, left: offset.left, visibility:'visible'}); + + // setting the speed to 0 to reduce the delay between same-sized content. + speed = ($box.width() === settings.w + loadedWidth && $box.height() === settings.h + loadedHeight) ? 0 : speed || 0; + + // this gives the wrapper plenty of breathing room so it's floated contents can move around smoothly, + // but it has to be shrank down around the size of div#colorbox when it's done. If not, + // it can invoke an obscure IE bug when using iframes. + $wrap[0].style.width = $wrap[0].style.height = "9999px"; + + function modalDimensions(that) { + $topBorder[0].style.width = $bottomBorder[0].style.width = $content[0].style.width = (parseInt(that.style.width,10) - interfaceWidth)+'px'; + $content[0].style.height = $leftBorder[0].style.height = $rightBorder[0].style.height = (parseInt(that.style.height,10) - interfaceHeight)+'px'; + } + + css = {width: settings.w + loadedWidth + interfaceWidth, height: settings.h + loadedHeight + interfaceHeight, top: top, left: left}; + + if(speed===0){ // temporary workaround to side-step jQuery-UI 1.8 bug (http://bugs.jquery.com/ticket/12273) + $box.css(css); + } + $box.dequeue().animate(css, { + duration: speed, + complete: function () { + modalDimensions(this); + + active = false; + + // shrink the wrapper down to exactly the size of colorbox to avoid a bug in IE's iframe implementation. + $wrap[0].style.width = (settings.w + loadedWidth + interfaceWidth) + "px"; + $wrap[0].style.height = (settings.h + loadedHeight + interfaceHeight) + "px"; + + if (settings.reposition) { + setTimeout(function () { // small delay before binding onresize due to an IE8 bug. + $window.bind('resize.' + prefix, publicMethod.position); + }, 1); + } + + if (loadedCallback) { + loadedCallback(); + } + }, + step: function () { + modalDimensions(this); + } + }); + }; + + publicMethod.resize = function (options) { + if (open) { + options = options || {}; + + if (options.width) { + settings.w = setSize(options.width, 'x') - loadedWidth - interfaceWidth; + } + if (options.innerWidth) { + settings.w = setSize(options.innerWidth, 'x'); + } + $loaded.css({width: settings.w}); + + if (options.height) { + settings.h = setSize(options.height, 'y') - loadedHeight - interfaceHeight; + } + if (options.innerHeight) { + settings.h = setSize(options.innerHeight, 'y'); + } + if (!options.innerHeight && !options.height) { + $loaded.css({height: "auto"}); + settings.h = $loaded.height(); + } + $loaded.css({height: settings.h}); + + publicMethod.position(settings.transition === "none" ? 0 : settings.speed); + } + }; + + publicMethod.prep = function (object) { + if (!open) { + return; + } + + var callback, speed = settings.transition === "none" ? 0 : settings.speed; + + $loaded.empty().remove(); // Using empty first may prevent some IE7 issues. + + $loaded = $tag(div, 'LoadedContent').append(object); + + function getWidth() { + settings.w = settings.w || $loaded.width(); + settings.w = settings.mw && settings.mw < settings.w ? settings.mw : settings.w; + return settings.w; + } + function getHeight() { + settings.h = settings.h || $loaded.height(); + settings.h = settings.mh && settings.mh < settings.h ? settings.mh : settings.h; + return settings.h; + } + + $loaded.hide() + .appendTo($loadingBay.show())// content has to be appended to the DOM for accurate size calculations. + .css({width: getWidth(), overflow: settings.scrolling ? 'auto' : 'hidden'}) + .css({height: getHeight()})// sets the height independently from the width in case the new width influences the value of height. + .prependTo($content); + + $loadingBay.hide(); + + // floating the IMG removes the bottom line-height and fixed a problem where IE miscalculates the width of the parent element as 100% of the document width. + + $(photo).css({'float': 'none'}); + + callback = function () { + var total = $related.length, + iframe, + frameBorder = 'frameBorder', + allowTransparency = 'allowTransparency', + complete; + + if (!open) { + return; + } + + function removeFilter() { // Needed for IE7 & IE8 in versions of jQuery prior to 1.7.2 + if ($.support.opacity === false) { + $box[0].style.removeAttribute('filter'); + } + } + + complete = function () { + clearTimeout(loadingTimer); + $loadingOverlay.hide(); + trigger(event_complete, settings.onComplete); + }; + + + $title.html(settings.title).add($loaded).show(); + + if (total > 1) { // handle grouping + if (typeof settings.current === "string") { + $current.html(settings.current.replace('{current}', index + 1).replace('{total}', total)).show(); + } + + $next[(settings.loop || index < total - 1) ? "show" : "hide"]().html(settings.next); + $prev[(settings.loop || index) ? "show" : "hide"]().html(settings.previous); + + if (settings.slideshow) { + $slideshow.show(); + } + + // Preloads images within a rel group + if (settings.preloading) { + $.each([getIndex(-1), getIndex(1)], function(){ + var src, + img, + i = $related[this], + data = $.data(i, colorbox); + + if (data && data.href) { + src = data.href; + if ($.isFunction(src)) { + src = src.call(i); + } + } else { + src = $(i).attr('href'); + } + + if (src && isImage(data, src)) { + src = retinaUrl(data, src); + img = new Image(); + img.src = src; + } + }); + } + } else { + $groupControls.hide(); + } + + if (settings.iframe) { + iframe = $tag('iframe')[0]; + + if (frameBorder in iframe) { + iframe[frameBorder] = 0; + } + + if (allowTransparency in iframe) { + iframe[allowTransparency] = "true"; + } + + if (!settings.scrolling) { + iframe.scrolling = "no"; + } + + $(iframe) + .attr({ + src: settings.href, + name: (new Date()).getTime(), // give the iframe a unique name to prevent caching + 'class': prefix + 'Iframe', + allowFullScreen : true, // allow HTML5 video to go fullscreen + webkitAllowFullScreen : true, + mozallowfullscreen : true + }) + .one('load', complete) + .appendTo($loaded); + + $events.one(event_purge, function () { + iframe.src = "//about:blank"; + }); + + if (settings.fastIframe) { + $(iframe).trigger('load'); + } + } else { + complete(); + } + + if (settings.transition === 'fade') { + $box.fadeTo(speed, 1, removeFilter); + } else { + removeFilter(); + } + }; + + if (settings.transition === 'fade') { + $box.fadeTo(speed, 0, function () { + publicMethod.position(0, callback); + }); + } else { + publicMethod.position(speed, callback); + } + }; + + function load () { + var href, setResize, prep = publicMethod.prep, $inline, request = ++requests; + + active = true; + + photo = false; + + element = $related[index]; + + makeSettings(); + + trigger(event_purge); + + trigger(event_load, settings.onLoad); + + settings.h = settings.height ? + setSize(settings.height, 'y') - loadedHeight - interfaceHeight : + settings.innerHeight && setSize(settings.innerHeight, 'y'); + + settings.w = settings.width ? + setSize(settings.width, 'x') - loadedWidth - interfaceWidth : + settings.innerWidth && setSize(settings.innerWidth, 'x'); + + // Sets the minimum dimensions for use in image scaling + settings.mw = settings.w; + settings.mh = settings.h; + + // Re-evaluate the minimum width and height based on maxWidth and maxHeight values. + // If the width or height exceed the maxWidth or maxHeight, use the maximum values instead. + if (settings.maxWidth) { + settings.mw = setSize(settings.maxWidth, 'x') - loadedWidth - interfaceWidth; + settings.mw = settings.w && settings.w < settings.mw ? settings.w : settings.mw; + } + if (settings.maxHeight) { + settings.mh = setSize(settings.maxHeight, 'y') - loadedHeight - interfaceHeight; + settings.mh = settings.h && settings.h < settings.mh ? settings.h : settings.mh; + } + + href = settings.href; + + loadingTimer = setTimeout(function () { + $loadingOverlay.show(); + }, 100); + + if (settings.inline) { + // Inserts an empty placeholder where inline content is being pulled from. + // An event is bound to put inline content back when Colorbox closes or loads new content. + $inline = $tag(div).hide().insertBefore($(href)[0]); + + $events.one(event_purge, function () { + $inline.replaceWith($loaded.children()); + }); + + prep($(href)); + } else if (settings.iframe) { + // IFrame element won't be added to the DOM until it is ready to be displayed, + // to avoid problems with DOM-ready JS that might be trying to run in that iframe. + prep(" "); + } else if (settings.html) { + prep(settings.html); + } else if (isImage(settings, href)) { + + href = retinaUrl(settings, href); + + $(photo = new Image()) + .addClass(prefix + 'Photo') + .bind('error',function () { + settings.title = false; + prep($tag(div, 'Error').html(settings.imgError)); + }) + .one('load', function () { + var percent; + + if (request !== requests) { + return; + } + + photo.alt = $(element).attr('alt') || $(element).attr('data-alt') || ''; + + if (settings.retinaImage && window.devicePixelRatio > 1) { + photo.height = photo.height / window.devicePixelRatio; + photo.width = photo.width / window.devicePixelRatio; + } + + if (settings.scalePhotos) { + setResize = function () { + photo.height -= photo.height * percent; + photo.width -= photo.width * percent; + }; + if (settings.mw && photo.width > settings.mw) { + percent = (photo.width - settings.mw) / photo.width; + setResize(); + } + if (settings.mh && photo.height > settings.mh) { + percent = (photo.height - settings.mh) / photo.height; + setResize(); + } + } + + if (settings.h) { + photo.style.marginTop = Math.max(settings.mh - photo.height, 0) / 2 + 'px'; + } + + if ($related[1] && (settings.loop || $related[index + 1])) { + photo.style.cursor = 'pointer'; + photo.onclick = function () { + publicMethod.next(); + }; + } + + photo.style.width = photo.width + 'px'; + photo.style.height = photo.height + 'px'; + + setTimeout(function () { // A pause because Chrome will sometimes report a 0 by 0 size otherwise. + prep(photo); + }, 1); + }); + + setTimeout(function () { // A pause because Opera 10.6+ will sometimes not run the onload function otherwise. + photo.src = href; + }, 1); + } else if (href) { + $loadingBay.load(href, settings.data, function (data, status) { + if (request === requests) { + prep(status === 'error' ? $tag(div, 'Error').html(settings.xhrError) : $(this).contents()); + } + }); + } + } + + // Navigates to the next page/image in a set. + publicMethod.next = function () { + if (!active && $related[1] && (settings.loop || $related[index + 1])) { + index = getIndex(1); + launch($related[index]); + } + }; + + publicMethod.prev = function () { + if (!active && $related[1] && (settings.loop || index)) { + index = getIndex(-1); + launch($related[index]); + } + }; + + // Note: to use this within an iframe use the following format: parent.jQuery.colorbox.close(); + publicMethod.close = function () { + if (open && !closing) { + + closing = true; + + open = false; + + trigger(event_cleanup, settings.onCleanup); + + $window.unbind('.' + prefix); + + $overlay.fadeTo(settings.fadeOut || 0, 0); + + $box.stop().fadeTo(settings.fadeOut || 0, 0, function () { + + $box.add($overlay).css({'opacity': 1, cursor: 'auto'}).hide(); + + trigger(event_purge); + + $loaded.empty().remove(); // Using empty first may prevent some IE7 issues. + + setTimeout(function () { + closing = false; + trigger(event_closed, settings.onClosed); + }, 1); + }); + } + }; + + // Removes changes Colorbox made to the document, but does not remove the plugin. + publicMethod.remove = function () { + if (!$box) { return; } + + $box.stop(); + $.colorbox.close(); + $box.stop().remove(); + $overlay.remove(); + closing = false; + $box = null; + $('.' + boxElement) + .removeData(colorbox) + .removeClass(boxElement); + + $(document).unbind('click.'+prefix); + }; 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\ No newline at end of file diff --git a/wqflask/wqflask/templates/admin/ind_user_manager.html b/wqflask/wqflask/templates/admin/ind_user_manager.html new file mode 100644 index 00000000..9776af0b --- /dev/null +++ b/wqflask/wqflask/templates/admin/ind_user_manager.html @@ -0,0 +1,62 @@ +{% extends "base.html" %} +{% block title %}User Manager{% endblock %} +{% block content %} +<!-- Start of body --> + <header class="jumbotron subhead" id="overview"> + <div class="container"> + <h1>User Manager</h1> + </div> + </header> + + <div class="container"> + <div class="page-header"> + <h1>{{ user.email }} <small>User #{{ user.id }}</small></h1> + + <span class="badge">{{ numify(user.login_count, "login", "logins").capitalize() }}</span> + + {% if user.active %} + <span class="label label-success">Active</span> + {% else %} + <span class="label label-warning">Inactive</span> + {% endif %} + </div> + + + + <table class="table table-hover"> +<!-- <thead> + <tr> + <th>Field</th> + <th>Value</th> + </tr> + </thead>--> + + + <tr> + <td>Confirmed</td> + <td>{{ user.confirmed_at }}</td> + </tr> + + <tr> + <td>Current login</td> + <td>{{ user.current_login_at }} from {{ user.current_login_ip }}</td> + </tr> + + <tr> + <td>Last login</td> + <td>{{ user.last_login_at }} from {{ user.last_login_ip }}</td> + </tr> + + <!-- <tr> + <td>Number of logins</td> + <td>{{ user.login_count }}</td> + </tr>--> + + </table> + + + </div> + +<!-- End of body --> + +{% endblock %} diff --git a/wqflask/wqflask/templates/admin/user_manager.html b/wqflask/wqflask/templates/admin/user_manager.html new file mode 100644 index 00000000..14cd12e0 --- /dev/null +++ b/wqflask/wqflask/templates/admin/user_manager.html @@ -0,0 +1,42 @@ +{% extends "base.html" %} +{% block title %}User Manager{% endblock %} +{% block content %} +<!-- Start of body --> + <header class="jumbotron subhead" id="overview"> + <div class="container"> + <h1>User Manager</h1> + </div> + </header> + + <div class="container"> + <div class="page-header"> + <h1>User Manager</h1> + </div> + + <table class="table table-hover"> + <thead> + <tr> + <th>ID</th> + <th>Email</th> + <th>Confirmed at</th> + <th>Active</th> + </tr> + </thead> + {% for user in users %} + <tr> + <td title="{{ user.__dict__ }}"> + <a href="{{ url_for('manage_user', user_id=user.id) }}">{{ user.id }}</a> + </td> + <td>{{ user.email }}</td> + <td>{{ user.confirmed_at }}</td> + <td>{{ user.active }}</td> + </tr> + {% endfor %} + </table> + + + </div> + +<!-- End of body --> + +{% endblock %} diff --git a/wqflask/wqflask/templates/all_results.html b/wqflask/wqflask/templates/all_results.html new file mode 100644 index 00000000..a42e42d8 --- /dev/null +++ b/wqflask/wqflask/templates/all_results.html @@ -0,0 +1,134 @@ + <ul class="nav nav-tabs">
+ {% for species in species_groups %}
+ <li> <a href="#tab{{ loop.index }}" data-toggle="tab">{{ species }}</a></li>
+ {% endfor %}
+ </ul>
+ <div class="tab-content">
+ {% for species in species_groups %}
+ <div class="tab-pane active" id="tab{{ loop.index }}">
+ <div class="tabbable tabs-left">
+ <ul class="nav nav-tabs">
+ {% if species_groups[species]['phenotype'] %}
+ <li class="active"> <a href="#tab{{ loop.index }}_1" data-toggle="tab">Phenotype</a></li>
+ {% endif %}
+ {% if species_groups[species]['mrna_assay'] %}
+ <li> <a href="#tab{{ loop.index }}_2" data-toggle="tab">mRNA Assay</a></li>
+ {% endif %}
+ {% if species_groups[species]['genotype'] %}
+ <li> <a href="#tab{{ loop.index }}_3" data-toggle="tab">Genotype</a></li>
+ {% endif %}
+ </ul>
+ <div class="tab-content">
+ {% if species_groups[species]['phenotype'] %}
+ <div class="tab-pane active" id="tab{{ loop.index }}_1">
+ <table id="pheno_results" class="table table-hover table-striped table-bordered">
+ <thead>
+ <tr>
+ <th>Id</th>
+ <th>Species</th>
+ <th>Group</th>
+ <th>Description</th>
+ <th>LRS</th>
+ <th>Year</th>
+ <th>Authors</th>
+ </tr>
+ </thead>
+ <tbody>
+ {% for result in results.phenotype %}
+ {% if result.result_fields['species'] == species %}
+ <tr>
+ <td>{{ result.result_fields['phenotype_id'] }}</td>
+ <td>{{ result.result_fields['species'] }}</td>
+ <td>{{ result.result_fields['group_name'] }}</td>
+ <td>{{ result.result_fields['description'] }}</td>
+ <td>{{ result.result_fields['lrs'] }}</td>
+ <td>
+ <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids={{ result.result_fields['pubmed_id'] }}&dopt=Abstract">
+ {{ result.result_fields['year'] }}
+ </a>
+ </td>
+ <td>{{ result.result_fields['authors'] }}</td>
+ </tr>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+ </div>
+ {% endif %}
+ {% if species_groups[species]['mrna_assay'] %}
+ <div class="tab-pane" id="tab{{ loop.index }}_2">
+ <table id="mrna_assay_results" class="table table-hover table-striped table-bordered">
+ <thead>
+ <tr>
+ <th>Record ID</th>
+ <th>Species</th>
+ <th>Group</th>
+ <th>Data Set</th>
+ <th>Symbol</th>
+ <th>Description</th>
+ <th>Location</th>
+ <th>Mean Expr</th>
+ <th>Max LRS</th>
+ </tr>
+ </thead>
+ <tbody>
+ {% for result in results.mrna_assay %}
+ {% if result.result_fields['species'] == species %}
+ <tr>
+ <td>
+ <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['name'] }}&dataset={{ result.result_fields['dataset'] }}"
+ {{ result.result_fields['name'] }}
+ </a>
+ </td>
+ <td>{{ result.result_fields['species'] }}</td>
+ <td>{{ result.result_fields['group_name'] }}</td>
+ <td>{{ result.result_fields['dataset_name'] }}</td>
+ <td>{{ result.result_fields['symbol'] }}</td>
+ <td>{{ result.result_fields['description'] }}</td>
+ <td>{{ result.result_fields['chr'] }} : {{ result['mb'] }}</td>
+ <td>{{ result.result_fields['mean'] }}</td>
+ <td>{{ result.result_fields['lrs'] }}</td>
+ </tr>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+ </div>
+ {% endif %}
+ {% if species_groups[species]['genotype'] %}
+ <div class="tab-pane" id="tab{{ loop.index }}_3">
+ <table id="geno_results" class="table table-hover table-striped table-bordered">
+ <thead>
+ <tr>
+ <th>Marker</th>
+ <th>Species</th>
+ <th>Group</th>
+ <th>Data Set</th>
+ <th>Location</th>
+ </tr>
+ </thead>
+ <tbody>
+ {% for result in results.genotype %}
+ {% if result.result_fields['species'] == species %}
+ <tr>
+ <td>
+ <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['marker_name'] }}&dataset={{ result.result_fields['dataset'] }}">
+ {{ result.result_fields['marker_name'] }}
+ </a>
+ </td>
+ <td>{{ result.result_fields['species'] }}</td>
+ <td>{{ result.result_fields['group_name'] }}</td>
+ <td>{{ result.result_fields['dataset_name'] }}</td>
+ <td>{{ result.result_fields['chr'] }} : {{ result.result_fields['mb'] }}</td>
+ </tr>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+ </div>
+ {% endif %}
+ </div>
+ </div>
+ </div>
+ {% endfor %}
+ </div>
\ No newline at end of file diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html index 590f5789..bdb1c362 100644 --- a/wqflask/wqflask/templates/base.html +++ b/wqflask/wqflask/templates/base.html @@ -14,9 +14,12 @@ <!-- HTML5 shim, for IE6-8 support of HTML5 elements --> <!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> <![endif]--> - + + <link rel="stylesheet" type="text/css" href="/static/packages/colorbox/example4/colorbox.css" /> + <link rel="stylesheet" type="text/css" href="/static/new/css/main.css" /> + {% block css %} {% endblock %} @@ -26,49 +29,56 @@ <!-- Navbar ================================================== --> <div class="navbar navbar-inverse navbar-fixed-top"> - <div class="navbar-inner"> - <div class="container"> - <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse"> - <span class="icon-bar"></span> - <span class="icon-bar"></span> - <span class="icon-bar"></span> - </button> - <a class="brand" href="/">GeneNetwork</a> - <div class="nav-collapse collapse"> - <ul class="nav"> - <li class="active"> - <a href="/">Home</a> - </li> - <li class="dropdown"> - <a id="drop1" href="#" role="button" class="dropdown-toggle" data-toggle="dropdown"> - Search <b class="caret"></b> - </a> - <ul class="dropdown-menu" role="menu" aria-labelledby="drop1"> - <li><a tabindex="-1" href="/webqtl/main.py?FormID=tissueCorrelation">Tissue Corrleation</a></li> - <li><a tabindex="-1" href="/webqtl/main.py?FormID=snpBrowser">SNP Browser</a></li> - <li class="divider"></li> - <li><a tabindex="-1" href="/webqtl/main.py?FormID=geneWiki">Gene Wiki</a></li> + <div class="navbar-inner"> + <div class="container"> + <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="brand" href="/">GeneNetwork</a> + <div class="nav-collapse collapse"> + <ul class="nav"> + <li class="active"> + <a href="/">Home</a> + </li> + <li class="dropdown"> + <a id="drop1" href="#" role="button" class="dropdown-toggle" data-toggle="dropdown"> + Search <b class="caret"></b> + </a> + <ul class="dropdown-menu" role="menu" aria-labelledby="drop1"> + <li><a tabindex="-1" href="/webqtl/main.py?FormID=tissueCorrelation">Tissue Corrleation</a></li> + <li><a tabindex="-1" href="/webqtl/main.py?FormID=snpBrowser">SNP Browser</a></li> + <li class="divider"></li> + <li><a tabindex="-1" href="/webqtl/main.py?FormID=geneWiki">Gene Wiki</a></li> + </ul> + </li> + <li class=""> + <a href="#">Help</a> + </li> + <li class=""> + <a href="/whats_new">News</a> + </li> + <li class=""> + <a href="/reference">References</a> + </li> + <li class=""> + <a href="/policies">Policies</a> + </li> + <li class=""> + <a href="/links">Links</a> + </li> + <li class=""> + {% if g.identity.name=="anon" %} + <a id="login" class="modalize" href="/login">Sign in</a> + {% else %} + <a href="/logout">Sign out</a> + {% endif %} + </li> </ul> - </li> - <li class=""> - <a href="#">Help</a> - </li> - <li class=""> - <a href="/whats_new">News</a> - </li> - <li class=""> - <a href="./reference.html">References</a> - </li> - <li class=""> - <a href="./policies">Policies</a> - </li> - <li class=""> - <a href="./links">Links</a> - </li> - </ul> - </div> + </div> + </div> </div> - </div> </div> {% block content %}{% endblock %} @@ -137,6 +147,22 @@ </div> </footer> + <!--http://stackoverflow.com/questions/14045515/how-can-i-reuse-one-bootstrap-modal-div--> + <!-- Modal --> + <div id="utility" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="myModalLabel" aria-hidden="true"> + <!--<div class="modal-header">--> + <!-- <button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button>--> + <!-- <h3 id="myModalLabel">Register</h3>--> + <!--</div>--> + <div class="modal-body"> + <p>.</p> + </div> + <!--<div class="modal-footer">--> + <!-- <button class="btn" data-dismiss="modal" aria-hidden="true">Close</button>--> + <!-- <button class="btn btn-primary">Save changes</button>--> + <!--</div>--> + </div> + <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.8.3/jquery.min.js"></script> <script src="/static/packages/bootstrap/js/bootstrap.min.js"></script> <script> @@ -152,7 +178,14 @@ <script src="/static/new/js_external/jquery.cookie.js"></script> <script type="text/javascript" src="/static/new/js_external/json2.js"></script> <script src="http://ajax.googleapis.com/ajax/libs/jqueryui/1.9.1/jquery-ui.min.js" type="text/javascript"></script> + + <script language="javascript" type="text/javascript" src="/static/packages/colorbox/jquery.colorbox.js"></script> + <script type="text/javascript" src="/static/new/javascript/login.js"></script> {% block js %} {% endblock %} + + + + </body> </html> diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index c01898b3..f9c5188f 100644 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -8,16 +8,15 @@ <header class="jumbotron subhead" id="overview"> <div class="container"> <h1>GeneNetwork</h1> - <p class="lead">Open source bioinformatics for systems genetics<br /> - Brought to you by the University of Tennessee</p> + <p class="lead">Open source bioinformatics for systems genetics</p> </div> </header> - <div class="container"> <div class="row"> <div class="span3 bs-docs-sidebar"> <ul class="nav nav-list bs-docs-sidenav"> + <li><a href="#quick-search"><i class="icon-chevron-right"></i> Quick Search</a></li> <li><a href="#search"><i class="icon-chevron-right"></i> Search</a></li> <li><a href="#getting-started"><i class="icon-chevron-right"></i> Getting started</a></li> <li><a href="#advanced"><i class="icon-chevron-right"></i> Advanced commands</a></li> @@ -27,6 +26,33 @@ </div> <div class="span9"> + <section id="quick-search"> + <div class="page-header"> + <h1>Quick search</h1> + </div> + + <form method="get" action="/search" name="SEARCHFORM"> + <fieldset> + <div class="input-prepend"> + <select id="trait_type" name="trait_type" class="span2"> + <option value="all">All</option> + <option value="mrna_assay">Molecular Assays</option> + <option value="phenotype">Phenotypes</option> + <option value="genotype">Genotypes</option> + </select> + </div> + <div class="input-append"> + <input class="input-xlarge" + id="quick" name="q" + type="text" maxlength="500"> + + <input id="btsearch" type="submit" + class="btn btn-primary" value="Search"> + </div> + </fieldset> + </form> + </section> + <section id="search"> <div class="page-header"> <h1>Select and search</h1> diff --git a/wqflask/wqflask/templates/marker_regression.html b/wqflask/wqflask/templates/marker_regression.html index aeb05132..9260acab 100644 --- a/wqflask/wqflask/templates/marker_regression.html +++ b/wqflask/wqflask/templates/marker_regression.html @@ -3,6 +3,9 @@ {% block css %} <link rel="stylesheet" type="text/css" href="/static/packages/jqplot/jquery.jqplot.min.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/marker_regression.css" /> + <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" /> + <link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" /> + <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> {% endblock %} {% block content %} <!-- Start of body --> @@ -16,11 +19,44 @@ </header> <div class="container"> - <div id="manhattan_plots" class="manhattan_plots"></div> - <div id="permutation_histogram" class="permutation_histogram"></div> + <div> + <h2> + Manhattan Plot + </h2> + </div> + <div id="manhattan_plots" class="manhattan_plots"> + + </div> + <div> + <h2> + Genome Association Results + </h2> + </div> + <table cellpadding="0" cellspacing="0" border="0" id="qtl_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <td>Index</td> + <td>LOD Score</td> + <td>Chr</td> + <td>Mb</td> + <td>Locus</td> + </tr> + </thead> + <tbody> + {% for marker in qtl_results %} + <tr> + <td>{{loop.index}}</td> + <td>{{marker.lod_score}}</td> + <td>{{marker.chr}}</td> + <td>{{marker.Mb}}</td> + <td>{{marker.name}}</td> + </tr> + {% endfor %} + </tbody> + </table> + </div> - <!-- End of body --> {% endblock %} @@ -33,12 +69,39 @@ <!--[if lt IE 9]> <script language="javascript" type="text/javascript" src="/static/packages/jqplot/excanvas.js"></script> <![endif]--> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/jquery.jqplot.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.pointLabels.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.canvasAxisTickRenderer.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.barRenderer.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.markerRenderer.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.canvasTextRenderer.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/packages/jqplot/plugins/jqplot.canvasAxisLabelRenderer.min.js"></script> + <script language="javascript" type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script> <script language="javascript" type="text/javascript" src="/static/new/javascript/marker_regression.js"></script> + <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.js"></script> + <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script> + + + <script type="text/javascript" charset="utf-8"> + $(document).ready( function () { + console.time("Creating table"); + $('#qtl_results').dataTable( { + //"sDom": "<<'span3'l><'span3'T><'span4'f>'row-fluid'r>t<'row-fluid'<'span6'i><'span6'p>>", + "sDom": "lTftipr", + "oTableTools": { + "aButtons": [ + "copy", + "print", + { + "sExtends": "collection", + "sButtonText": 'Save <span class="caret" />', + "aButtons": [ "csv", "xls", "pdf" ] + } + ], + "sSwfPath": "/static/packages/TableTools/media/swf/copy_csv_xls_pdf.swf" + }, + "iDisplayLength": 50, + "bLengthChange": true, + "bDeferRender": true, + "bSortClasses": false + } ); + console.timeEnd("Creating table"); + }); + </script> {% endblock %}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/quick_search.html b/wqflask/wqflask/templates/quick_search.html new file mode 100644 index 00000000..b0e38708 --- /dev/null +++ b/wqflask/wqflask/templates/quick_search.html @@ -0,0 +1,306 @@ +{% extends "base.html" %} +{% block title %}QuickSearch Results{% endblock %} +{% block content %} +<!-- Start of body --> + <header class="jumbotron subhead" id="overview"> + <div class="container"> + <h1>QuickSearch Results</h1> + <p class="lead"> + GeneNetwork found {{ numify(results|count, "record", "records") }}. + </p> + </div> + </header> + + <div class="container"> + <div class="page-header"> + <h1>Your Search</h1> + </div> + + <p>We across all data sets to find all records that match:</p> + + <ul> + {% if search_terms %} + <li> + <strong>{{search_terms}}</strong> + </li> + {% endif %} + </ul> + + + <div class="tabbable"> <!-- Only required for left/right tabs --> + {% if trait_type == 'all' %} + {% include 'all_results.html' %} + {% else %} + <ul class="nav nav-tabs"> + {% for species in species_groups %} + <li> <a href="#tab{{ loop.index }}" data-toggle="tab">{{ species }}</a></li> + {% endfor %} + </ul> + <div class="tab-content"> + {% for species in species_groups %} + <div class="tab-pane active" id="tab{{ loop.index }}"> + <div> + {# + <ul class="nav nav-tabs"> + {% if species_groups[species]['phenotype'] %} + <li class="active"> <a href="#tab{{ loop.index }}_1" data-toggle="tab">Phenotype</a></li> + {% endif %} + {% if species_groups[species]['mrna_assay'] %} + <li> <a href="#tab{{ loop.index }}_2" data-toggle="tab">mRNA Assay</a></li> + {% endif %} + {% if species_groups[species]['genotype'] %} + <li> <a href="#tab{{ loop.index }}_3" data-toggle="tab">Genotype</a></li> + {% endif %} + </ul> + #} + <div> + {% if trait_type == 'phenotype' and species_groups[species]['phenotype'] %} + <table id="pheno_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Id</th> + <th>Species</th> + <th>Group</th> + <th>Description</th> + <th>LRS</th> + <th>Year</th> + <th>Authors</th> + </tr> + </thead> + <tbody> + {% for result in results.phenotype %} + {% if result.result_fields['species'] == species %} + <tr> + <td>{{ result.result_fields['phenotype_id'] }}</td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['description'] }}</td> + <td>{{ result.result_fields['lrs'] }}</td> + <td> + <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids={{ result.result_fields['pubmed_id'] }}&dopt=Abstract"> + {{ result.result_fields['year'] }} + </a> + </td> + <td>{{ result.result_fields['authors'] }}</td> + </tr> + {% endif %} + {% endfor %} + </tbody> + </table> + {% endif %} + {% if trait_type == 'mrna_assay' and species_groups[species]['mrna_assay'] %} + <table id="mrna_assay_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Record ID</th> + <th>Species</th> + <th>Group</th> + <th>Data Set</th> + <th>Symbol</th> + <th>Description</th> + <th>Location</th> + <th>Mean Expr</th> + <th>Max LRS</th> + </tr> + </thead> + <tbody> + {% for result in results.mrna_assay %} + {% if result.result_fields['species'] == species %} + <tr> + <td> + <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['name'] }}&dataset={{ result.result_fields['dataset'] }}" + {{ result.result_fields['name'] }} + </a> + </td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['dataset_name'] }}</td> + <td>{{ result.result_fields['symbol'] }}</td> + <td>{{ result.result_fields['description'] }}</td> + <td>{{ result.result_fields['chr'] }} : {{ result['mb'] }}</td> + <td>{{ result.result_fields['mean'] }}</td> + <td>{{ result.result_fields['lrs'] }}</td> + </tr> + {% endif %} + {% endfor %} + </tbody> + </table> + {% endif %} + {% if trait_type == 'genotype' and species_groups[species]['genotype'] %} + <table id="geno_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Marker</th> + <th>Species</th> + <th>Group</th> + <th>Data Set</th> + <th>Location</th> + </tr> + </thead> + <tbody> + {% for result in results.genotype %} + {% if result.result_fields['species'] == species %} + <tr> + <td> + <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['marker_name'] }}&dataset={{ result.result_fields['dataset'] }}"> + {{ result.result_fields['marker_name'] }} + </a> + </td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['dataset_name'] }}</td> + <td>{{ result.result_fields['chr'] }} : {{ result.result_fields['mb'] }}</td> + </tr> + {% endif %} + {% endfor %} + </tbody> + </table> + {% endif %} + </div> + </div> + </div> + {% endfor %} + </div> + {% endif %} + </div> + </div> + +<!-- End of body --> + +{% endblock %} + + {# + <table id="pheno_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Id</th> + <th>Species</th> + <th>Group</th> + <th>Description</th> + <th>LRS</th> + <th>Year</th> + <th>Authors</th> + </tr> + </thead> + <tbody> + {% for result in results.phenotype %} + <tr> + <td>{{ result.result_fields['phenotype_id'] }}</td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['description'] }}</td> + <td>{{ result.result_fields['lrs'] }}</td> + <td> + <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids={{ result.result_fields['pubmed_id'] }}&dopt=Abstract"> + {{ result.result_fields['year'] }} + </a> + </td> + <td>{{ result.result_fields['authors'] }}</td> + </tr> + {% endfor %} + </tbody> + </table> + </div> + <div class="tab-pane" id="tab2"> + <table id="mrna_assay_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Record ID</th> + <th>Species</th> + <th>Group</th> + <th>Data Set</th> + <th>Symbol</th> + <th>Description</th> + <th>Location</th> + <th>Mean Expr</th> + <th>Max LRS</th> + </tr> + </thead> + <tbody> + {% for result in results.mrna_assay %} + <tr> + <td> + <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['name'] }}&dataset={{ result.result_fields['dataset'] }}" + {{ result.result_fields['name'] }} + </a> + </td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['dataset_name'] }}</td> + <td>{{ result.result_fields['symbol'] }}</td> + <td>{{ result.result_fields['description'] }}</td> + <td>{{ result.result_fields['chr'] }} : {{ result['mb'] }}</td> + <td>{{ result.result_fields['mean'] }}</td> + <td>{{ result.result_fields['lrs'] }}</td> + </tr> + {% endfor %} + </tbody> + </table> + </div> + <div class="tab-pane" id="tab3"> + <table id="geno_results" class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <th>Marker</th> + <th>Species</th> + <th>Group</th> + <th>Data Set</th> + <th>Location</th> + </tr> + </thead> + <tbody> + {% for result in results.genotype %} + <tr> + <td> + <a href="http://gn2python.genenetwork.org/show_trait?trait_id={{ result.result_fields['marker_name'] }}&dataset={{ result.result_fields['dataset'] }}"> + {{ result.result_fields['marker_name'] }} + </a> + </td> + <td>{{ result.result_fields['species'] }}</td> + <td>{{ result.result_fields['group_name'] }}</td> + <td>{{ result.result_fields['dataset_name'] }}</td> + <td>{{ result.result_fields['chr'] }} : {{ result.result_fields['mb'] }}</td> + </tr> + {% endfor %} + </tbody> + </table> + </div> + #} + + +{% block js %} + <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.js"></script> + <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script> + <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script> + + + <script type="text/javascript" charset="utf-8"> + $(document).ready( function () { + console.time("Creating table"); + $('#pheno_results, #mrna_assay_results, #geno_results').dataTable( { + //"sDom": "<<'span3'l><'span3'T><'span4'f>'row-fluid'r>t<'row-fluid'<'span6'i><'span6'p>>", + "sDom": "lTftipr", + "oTableTools": { + "aButtons": [ + "copy", + "print", + { + "sExtends": "collection", + "sButtonText": 'Save <span class="caret" />', + "aButtons": [ "csv", "xls", "pdf" ] + } + ], + "sSwfPath": "/static/packages/TableTools/media/swf/copy_csv_xls_pdf.swf" + }, + "iDisplayLength": 50, + "bLengthChange": true, + "bDeferRender": true, + "bSortClasses": false + } ); + console.timeEnd("Creating table"); + }); + </script> +{% endblock %} + diff --git a/wqflask/wqflask/templates/security/_macros.html b/wqflask/wqflask/templates/security/_macros.html new file mode 100644 index 00000000..ee662ae6 --- /dev/null +++ b/wqflask/wqflask/templates/security/_macros.html @@ -0,0 +1,39 @@ +{% macro render_field_with_errors(field) %} + <p> + {{ field.label }} {{ field(**kwargs)|safe }} + {% if field.errors %} + <ul> + {% for error in field.errors %} + <li>{{ error }}</li> + {% endfor %} + </ul> + {% endif %} + </p> +{% endmacro %} + +{% macro render_only_errors(field) %} + <p> + <!--{{ field.label }} {{ field(**kwargs)|safe }}--> + {% if field.errors %} + <div> + {% for error in field.errors %} + {% if error=="Email requires confirmation." %} + <div class="alert"> + <p>You must confirm your email address before signing in.</p> + <p>Check your email for confirmation instructions.</p> + <p>Can't find the email? Check your spam folder.</p> + <p>Still can't find it? <a class="modalize" href="/confirm"> + Click here to resend.</a></p> + </div> + {% else %} + <div class="alert">{{ error }}</div> + {% endif %} + {% endfor %} + </div> + {% endif %} + </p> +{% endmacro %} + +{% macro render_field(field) %} + <p>{{ field(**kwargs)|safe }}</p> +{% endmacro %} diff --git a/wqflask/wqflask/templates/security/_menu.html b/wqflask/wqflask/templates/security/_menu.html new file mode 100644 index 00000000..5291f809 --- /dev/null +++ b/wqflask/wqflask/templates/security/_menu.html @@ -0,0 +1,15 @@ +{% if security.registerable or security.recoverable or security.confirmabled %} +<h2>Menu</h2> +<ul> + <li><a href="{{ url_for_security('login') }}">Login</a></li> + {% if security.registerable %} + <li><a href="{{ url_for_security('register') }}">Register</a><br/></li> + {% endif %} + {% if security.recoverable %} + <li><a href="{{ url_for_security('forgot_password') }}">Forgot password</a><br/></li> + {% endif %} + {% if security.confirmable %} + <li><a href="{{ url_for_security('send_confirmation') }}">Confirm account</a></li> + {% endif %} +</ul> +{% endif %} diff --git a/wqflask/wqflask/templates/security/_messages.html b/wqflask/wqflask/templates/security/_messages.html new file mode 100644 index 00000000..179d0636 --- /dev/null +++ b/wqflask/wqflask/templates/security/_messages.html @@ -0,0 +1,9 @@ +{%- with messages = get_flashed_messages(with_categories=true) -%} + {% if messages %} + <ul class="flashes"> + {% for category, message in messages %} + <li class="{{ category }}">{{ message }}</li> + {% endfor %} + </ul> + {% endif %} +{%- endwith %}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/_scripts.html b/wqflask/wqflask/templates/security/_scripts.html new file mode 100644 index 00000000..5a453dca --- /dev/null +++ b/wqflask/wqflask/templates/security/_scripts.html @@ -0,0 +1,3 @@ +<!--<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.8.3/jquery.min.js"></script> +<script language="javascript" type="text/javascript" src="/static/packages/colorbox/jquery.colorbox.js"></script>--> +<script type="text/javascript" src="/static/new/javascript/login.js"></script> diff --git a/wqflask/wqflask/templates/security/change_password.html b/wqflask/wqflask/templates/security/change_password.html new file mode 100644 index 00000000..8ee3eb73 --- /dev/null +++ b/wqflask/wqflask/templates/security/change_password.html @@ -0,0 +1,11 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Change password</h1> +<form action="{{ url_for_security('change_password') }}" method="POST" name="change_password_form"> + {{ change_password_form.hidden_tag() }} + {{ render_field_with_errors(change_password_form.password) }} + {{ render_field_with_errors(change_password_form.new_password) }} + {{ render_field_with_errors(change_password_form.new_password_confirm) }} + {{ render_field(change_password_form.submit) }} +</form> + diff --git a/wqflask/wqflask/templates/security/email/change_notice.html b/wqflask/wqflask/templates/security/email/change_notice.html new file mode 100644 index 00000000..d1224cf5 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/change_notice.html @@ -0,0 +1,4 @@ +<p>Your password has been changed.</p> +{% if security.recoverable %} +<p>If you did not change your password, <a href="{{ url_for_security('forgot_password', _external=True) }}">click here to reset it</a>.</p> +{% endif %} diff --git a/wqflask/wqflask/templates/security/email/change_notice.txt b/wqflask/wqflask/templates/security/email/change_notice.txt new file mode 100644 index 00000000..e74bd80d --- /dev/null +++ b/wqflask/wqflask/templates/security/email/change_notice.txt @@ -0,0 +1,5 @@ +Your password has been changed +{% if security.recoverable %} +If you did not change your password, click the link below to reset it. +{{ url_for_security('forgot_password', _external=True) }} +{% endif %} diff --git a/wqflask/wqflask/templates/security/email/confirmation_instructions.html b/wqflask/wqflask/templates/security/email/confirmation_instructions.html new file mode 100644 index 00000000..239f670f --- /dev/null +++ b/wqflask/wqflask/templates/security/email/confirmation_instructions.html @@ -0,0 +1,5 @@ +<p>Welcome to GeneNetwork!</p> + +<p>Please confirm your email through the link below:</p> + +<p><a href="{{ confirmation_link }}">Confirm my account</a></p> diff --git a/wqflask/wqflask/templates/security/email/confirmation_instructions.txt b/wqflask/wqflask/templates/security/email/confirmation_instructions.txt new file mode 100644 index 00000000..babedd8b --- /dev/null +++ b/wqflask/wqflask/templates/security/email/confirmation_instructions.txt @@ -0,0 +1,5 @@ +Welcome to GeneNetwork! + +Please confirm your email through the link below: + +{{ confirmation_link }} diff --git a/wqflask/wqflask/templates/security/email/login_instructions.html b/wqflask/wqflask/templates/security/email/login_instructions.html new file mode 100644 index 00000000..45a7cb57 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/login_instructions.html @@ -0,0 +1,5 @@ +<p>Welcome {{ user.email }}!</p> + +<p>You can log into your through the link below:</p> + +<p><a href="{{ login_link }}">Login now</a></p>
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/login_instructions.txt b/wqflask/wqflask/templates/security/email/login_instructions.txt new file mode 100644 index 00000000..1364ed65 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/login_instructions.txt @@ -0,0 +1,5 @@ +Welcome {{ user.email }}! + +You can log into your through the link below: + +{{ login_link }}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/reset_instructions.html b/wqflask/wqflask/templates/security/email/reset_instructions.html new file mode 100644 index 00000000..fd0b48d8 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/reset_instructions.html @@ -0,0 +1 @@ +<p><a href="{{ reset_link }}">Click here to reset your password</a></p>
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/reset_instructions.txt b/wqflask/wqflask/templates/security/email/reset_instructions.txt new file mode 100644 index 00000000..91ac288e --- /dev/null +++ b/wqflask/wqflask/templates/security/email/reset_instructions.txt @@ -0,0 +1,3 @@ +Click the link below to reset your password: + +{{ reset_link }}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/reset_notice.html b/wqflask/wqflask/templates/security/email/reset_notice.html new file mode 100644 index 00000000..536e2961 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/reset_notice.html @@ -0,0 +1 @@ +<p>Your password has been reset</p>
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/reset_notice.txt b/wqflask/wqflask/templates/security/email/reset_notice.txt new file mode 100644 index 00000000..a3fa0b4b --- /dev/null +++ b/wqflask/wqflask/templates/security/email/reset_notice.txt @@ -0,0 +1 @@ +Your password has been reset
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/email/welcome.html b/wqflask/wqflask/templates/security/email/welcome.html new file mode 100644 index 00000000..3cb01ce0 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/welcome.html @@ -0,0 +1,9 @@ +<p>Welcome {{ user.email }}!</p> + +<p>We hope you find GeneNetwork an amazing resource!</p> + +{% if security.confirmable %} +<p>You can confirm your email through the link below:</p> + +<p><a href="{{ confirmation_link }}">Confirm my account</a></p> +{% endif %} diff --git a/wqflask/wqflask/templates/security/email/welcome.txt b/wqflask/wqflask/templates/security/email/welcome.txt new file mode 100644 index 00000000..9a400686 --- /dev/null +++ b/wqflask/wqflask/templates/security/email/welcome.txt @@ -0,0 +1,9 @@ +Welcome {{ user.email }}! + +We hope you find GeneNetwork an amazing resource! + +{% if security.confirmable %} +You can confirm your email through the link below: + +{{ confirmation_link }} +{% endif %} diff --git a/wqflask/wqflask/templates/security/forgot_password.html b/wqflask/wqflask/templates/security/forgot_password.html new file mode 100644 index 00000000..90fcaf66 --- /dev/null +++ b/wqflask/wqflask/templates/security/forgot_password.html @@ -0,0 +1,9 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Send password reset instructions</h1> +<form action="{{ url_for_security('forgot_password') }}" method="POST" name="forgot_password_form"> + {{ forgot_password_form.hidden_tag() }} + {{ render_field_with_errors(forgot_password_form.email) }} + {{ render_field(forgot_password_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/login_user.html b/wqflask/wqflask/templates/security/login_user.html new file mode 100644 index 00000000..bee4e824 --- /dev/null +++ b/wqflask/wqflask/templates/security/login_user.html @@ -0,0 +1,72 @@ +{% from "security/_macros.html" import render_only_errors %} +{% include "security/_messages.html" %} + +<div class="security_box"> + + <h4>Don't have an account?</h4> + + <center> + <a href="/register" class="btn btn-info modalize">Create a new account</a> + </center> + + <hr /> + + <h4>Already have an account?</h4> + + <h5>Sign in here</h5> + + <form class="form-horizontal" action="{{ url_for_security('login') }}" + method="POST" name="login_user_form"> + {{ login_user_form.hidden_tag() }} + <fieldset> + + + <div class="control-group"> + {{ render_only_errors(login_user_form.email) }} + <label class="control-label" for="email">Email Address</label> + <div class="controls"> + <input id="email" class="focused" name="email" type="text" value=""> + </div> + </div> + + <div class="control-group"> + {{ render_only_errors(login_user_form.password) }} + <label class="control-label" for="password">Password</label> + <div class="controls"> + <input id="password" name="password" type="password" value=""> + <br /> + + {% if security.recoverable %} + + <a href="{{ url_for_security('forgot_password') }}">Forgot your password?</a><br/> + </div> + {% endif %} + + </div> + + + <div class="control-group"> + <div class="controls"> + <label class="checkbox"> + <input id="remember" name="remember" type="checkbox" value="y"> Remember me + </label> + </div> + + + <div class="control-group"> + <div class="controls"> + <input id="next" name="next" type="hidden" value=""> + + <input class="btn btn-primary" id="submit" name="submit" type="submit" value="Sign in"> + </div> + + + </div> + </fieldset> + + </form> +</div> + + +{% include "security/_scripts.html" %} +<!--{% include "security/_menu.html" %}--> diff --git a/wqflask/wqflask/templates/security/register_user.html b/wqflask/wqflask/templates/security/register_user.html new file mode 100644 index 00000000..3cd021b0 --- /dev/null +++ b/wqflask/wqflask/templates/security/register_user.html @@ -0,0 +1,61 @@ +{% from "security/_macros.html" import render_only_errors %} +{% include "security/_messages.html" %} + +<div class="security_box"> + <h4>Already have an account?</h4> + + <center> + <a href="/login" + class="btn btn-info modalize">Sign in using existing account</a> + </center> + + <hr /> + + <h4>Don't have an account?</h4> + + <h5>Register here</h5> + + <form class="form-horizontal" action="{{ url_for_security('register') }}" + method="POST" name="login_user_form"> + {{ register_user_form.hidden_tag() }} + <fieldset> + + + <div class="control-group"> + <label class="control-label" for="email">Email Address</label> + <div class="controls"> + <input id="email" name="email" class="focused" type="text" value=""> + </div> + {{ render_only_errors(register_user_form.email) }} + </div> + + <div class="control-group"> + <label class="control-label" for="password">Password</label> + <div class="controls"> + <input id="password" name="password" type="password" value=""> + </div> + {{ render_only_errors(register_user_form.password) }} + </div> + + {% if register_user_form.password_confirm %} + <div class="control-group"> + <label class="control-label" for="password_confirm">Password</label> + <div class="controls"> + <input id="password" name="password_confirm" type="password" value=""> + </div> + {{ render_only_errors(register_user_form.password_confirm) }} + </div> + {% endif %} + + <div class="control-group"> + <div class="controls""> + <input class="btn btn-primary" id="submit" name="submit" type="submit" value="Sign in"> + </div> + </div> + + </fieldset> + + </form> +</div> +{% include "security/_scripts.html" %} +<!--{% include "security/_menu.html" %}--> diff --git a/wqflask/wqflask/templates/security/reset_password.html b/wqflask/wqflask/templates/security/reset_password.html new file mode 100644 index 00000000..e6fc3f58 --- /dev/null +++ b/wqflask/wqflask/templates/security/reset_password.html @@ -0,0 +1,10 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Reset password</h1> +<form action="{{ url_for_security('reset_password', token=reset_password_token) }}" method="POST" name="reset_password_form"> + {{ reset_password_form.hidden_tag() }} + {{ render_field_with_errors(reset_password_form.password) }} + {{ render_field_with_errors(reset_password_form.password_confirm) }} + {{ render_field(reset_password_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/security/send_confirmation.html b/wqflask/wqflask/templates/security/send_confirmation.html new file mode 100644 index 00000000..29a11257 --- /dev/null +++ b/wqflask/wqflask/templates/security/send_confirmation.html @@ -0,0 +1,29 @@ +{% from "security/_macros.html" import render_only_errors %} +{% include "security/_messages.html" %} + +<div class="security_box"> + <h4>Resend confirmation instructions</h4> + + <form action="{{ url_for_security('send_confirmation') }}" + method="POST" name="send_confirmation_form"> + + <fieldset> + {{ send_confirmation_form.hidden_tag() }} + + <div class="control-group"> + <label class="control-label" for="email">Email Address</label> + <div class="controls"> + <input id="email" name="email" class="focused" type="text" value=""> + </div> + {{ render_only_errors(send_confirmation_form.email) }} + + </div> + + <div class="control-group"> + <div class="controls""> + <input class="btn btn-primary" id="submit" name="submit" type="submit" value="Sign in"> + </div> + </div> + </fieldset> + </form> +</div> diff --git a/wqflask/wqflask/templates/security/send_login.html b/wqflask/wqflask/templates/security/send_login.html new file mode 100644 index 00000000..15611c57 --- /dev/null +++ b/wqflask/wqflask/templates/security/send_login.html @@ -0,0 +1,9 @@ +{% from "security/_macros.html" import render_field_with_errors, render_field %} +{% include "security/_messages.html" %} +<h1>Login</h1> +<form action="{{ url_for_security('login') }}" method="POST" name="send_login_form"> + {{ send_login_form.hidden_tag() }} + {{ render_field_with_errors(send_login_form.email) }} + {{ render_field(send_login_form.submit) }} +</form> +{% include "security/_menu.html" %}
\ No newline at end of file diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html index 79271356..799245c3 100644 --- a/wqflask/wqflask/templates/show_trait.html +++ b/wqflask/wqflask/templates/show_trait.html @@ -1,5 +1,10 @@ {% extends "base.html" %} {% block title %}Trait Data and Analysis{% endblock %} +{% block css %} + <link rel="stylesheet" type="text/css" href="/static/new/css/marker_regression.css" /> + <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" /> + <link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" /> +{% endblock %} {% block content %} <!-- Start of body --> <header class="jumbotron subhead" id="overview"> @@ -14,9 +19,11 @@ <form method="post" action="/corr_compute" name="trait_page" id="trait_data_form" class="form-horizontal"> {% for key in hddn %} - <input type="hidden" name="{{ key }}" value="{{ hddn[key] }}"> + <input type="hidden" name="{{ key }}" value="{{ hddn[key] }}"> {% endfor %} + <input type="hidden" name="temp_uuid" id="temp_uuid" value="{{ temp_uuid }}"> + <div class="container"> <div class="page-header"> <h1>{{ dataset.group.species.capitalize() }} - @@ -26,10 +33,11 @@ </div> {% include 'show_trait_details.html' %} - {% include 'show_trait_statistics.html' %} + {# {% include 'show_trait_statistics.html' %} #} {% include 'show_trait_calculate_correlations.html' %} {% include 'show_trait_mapping_tools.html' %} {% include 'show_trait_edit_data.html' %} + {% include 'show_trait_progress_bar.html' %} </div> </form> @@ -43,7 +51,8 @@ js_data = {{ js_data | safe }} </script> - <script type="text/javascript" src="/static/new/js_external/underscore-min.js"></script>--> + <script type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script> + <script type="text/javascript" src="/static/new/js_external/underscore-min.js"></script> <script type="text/javascript" src="/static/new/js_external/underscore.string.min.js"></script> <script type="text/javascript" src="/static/new/packages/ValidationPlugin/dist/jquery.validate.min.js"></script> diff --git a/wqflask/wqflask/templates/show_trait_calculate_correlations.html b/wqflask/wqflask/templates/show_trait_calculate_correlations.html index 543afadd..12a064c0 100644 --- a/wqflask/wqflask/templates/show_trait_calculate_correlations.html +++ b/wqflask/wqflask/templates/show_trait_calculate_correlations.html @@ -1,130 +1,119 @@ - <p class="sectionheader" id="title3" style="border-radius: 5px;"> Calculate Correlations</p> +<div> + <h2>Calculate Correlations</h2> + <div class="well form-horizontal"> + + <div class="control-group"> + <label for="corr_method" class="control-label">Method</label> + <div class="controls"> + <select name="corr_method"> + <option value="sample">Sample r</option> + <option value="lit">Literature r</option> + <option value="tissue">Tissue r</option> + </select> + </div> + </div> + + <div class="control-group"> + <label for="corr_dataset" class="control-label">Database</label> + <div class="controls"> + <select name="corr_dataset"> + {% for tissue in corr_tools.dataset_menu %} + {% if tissue.tissue %} + <optgroup label="{{ tissue.tissue }} ------"> + {% endif %} + {% for dataset in tissue.datasets %} + <option value="{{ dataset[1] }}" + {% if corr_tools.dataset_menu_selected == dataset[1] %} + selected + {% endif %}> + {{ dataset[0] }} + </option> + {% endfor %} + {% if tissue.tissue %} + </optgroup> + {% endif %} + {% endfor %} + </select> + </div> + </div> + + <div class="control-group"> + <label for="corr_return_results" class="control-label">Return</label> + <div class="controls"> + <select name="corr_return_results"> + {% for return_result in corr_tools.return_results_menu %} + <option value="{{ return_result }}" + {% if corr_tools.return_results_menu_selected == return_result %} + selected + {% endif %}> + Top {{ return_result }} + </option> + {% endfor %} + </select> + </div> + </div> + + <div class="control-group"> + <label for="corr_samples_group" class="control-label">Samples</label> + <div class="controls"> + <select name="corr_samples_group"> + {% for group, pretty_group in sample_group_types.items() %} + <option value="{{ group }}">{{ pretty_group }}</option> + {% endfor %} + </select> + </div> + </div> + + <div class="control-group"> + <label for="corr_sample_method" class="control-label">Type</label> + <div class="controls"> + <select name="corr_sample_method"> + <option value="pearson">Pearson</option> + <option value="spearman">Spearman Rank</option> + </select> + </div> + </div> + + <div class="control-group"> + <div class="controls"> + <button class="btn btn-inverse submit_special" + data-url="/corr_compute" + title="Compute Correlation"> + <i class="icon-ok-circle icon-white"></i> Compute + </button> + </div> + </div> - <p id="sectionbody3"></p> + <span id="sample_r_desc" class="correlation_desc fs12"> + The <a href="/correlationAnnotation.html#sample_r" target="_blank">Sample Correlation</a> + is computed + between trait data and any<br> + other traits in the sample database selected above. Use + <a href="/glossary.html#Correlations" target="_blank">Spearman + Rank</a><br> + when the sample size is small (<20) or when there are influential outliers. + </span> + <SPAN id="lit_r_desc" style="display: none;" class="correlation_desc fs12"> + The <A HREF="/correlationAnnotation.html" TARGET="_blank">Literature Correlation</A> + (Lit r) between + this gene and all other genes is computed<BR> + using the <A HREF="https://grits.eecs.utk.edu/sgo/sgo.html" TARGET="_blank"> + Semantic Gene Organizer</A> + and human, rat, and mouse data from PubMed. <BR> + Values are ranked by Lit r, but Sample r and Tissue r are also displayed.<BR><BR> + <A HREF="/glossary.html#Literature" TARGET="_blank">More on using Lit r</A> + </SPAN> + <SPAN id="tissue_r_desc" style="display: none;" class="correlation_desc fs12"> + The <A HREF="/webqtl/main.py?FormID=tissueCorrelation" TARGET="_blank">Tissue Correlation</A> + (Tissue r) + estimates the similarity of expression of two genes<BR> + or transcripts across different cells, tissues, or organs + (<A HREF="/correlationAnnotation.html#tissue_r" TARGET="_blank">glossary</A>). + Tissue correlations<BR> + are generated by analyzing expression in multiple samples usually taken from single cases.<BR> + <STRONG>Pearson</STRONG> and <STRONG>Spearman Rank</STRONG> correlations have been + computed for all pairs of genes<BR> using data from mouse samples.<BR> + </SPAN> - <table class="target4" cellpadding="0" cellspacing="0" width="100%"> - <tr> - <td> - <div class="ui-tabs" id="corr_tabs"> - <div id="corrtabs-1"> - <table cellpadding="0" cellspacing="0" width="100%"> - <tr> - <td> - <input type="hidden" name="orderBy" value="2"> - - <table cellpadding="2" cellspacing="0" width="619px"> - <tr> - <td><span class="ff1 fwb fs12">Method:</span></td> - <td colspan="3"> - <select name="corr_method" size="1"> - <option value="sample">Sample r</option> - <option value="lit">Literature r</option> - <option value="tissue">Tissue r</option> - </select> - </td> - </tr> - <tr> - <td><span class="ffl fwb fs12">Database:</span></td> - <td colspan="3"> - <select name="corr_dataset" size="1"> - {% for tissue in corr_tools.dataset_menu %} - {% if tissue.tissue %} - <optgroup label="{{ tissue.tissue }} ------"> - {% endif %} - {% for dataset in tissue.datasets %} - <option value="{{ dataset[1] }}" - {% if corr_tools.dataset_menu_selected == dataset[1] %} - selected - {% endif %}> - {{ dataset[0] }} - </option> - {% endfor %} - {% if tissue.tissue %} - </optgroup> - {% endif %} - {% endfor %} - </select> - </td> - </tr> - - - <tr> - <td><span class="ffl fwb fs12">Return:</span></td> - - <td><select name="corr_return_results" size="1"> - {% for return_result in corr_tools.return_results_menu %} - <option value="{{ return_result }}" - {% if corr_tools.return_results_menu_selected == return_result %} - selected - {% endif %}> - Top {{ return_result }} - </option> - {% endfor %} - </select></td> - </tr> - - - <tr class="mdp1"> - <td><span class="ffl fwb fs12">Samples:</span></td> - <td> - <select name="corr_samples_group" size="1"> - {% for group, pretty_group in sample_group_types.items() %} - <option value="{{ group }}"> - {{ pretty_group }} - </option> - {% endfor %} - </select> - </td> - </tr> - - </table> - <br> - <div id="corr_sample_method_options"> - Pearson <input type="radio" name="corr_sample_method" value="pearson" checked> - - Spearman Rank <input type="radio" name="corr_sample_method" value="spearman"> - </div> - <br> - - <input type="submit" name="corr_compute" id="corr_compute" class="btn" value="Compute"><br><br> - - <span id="sample_r_desc" class="correlation_desc fs12"> - The <a href="/correlationAnnotation.html#sample_r" target="_blank">Sample Correlation</a> - is computed - between trait data and any<br> - other traits in the sample database selected above. Use - <a href="/glossary.html#Correlations" target="_blank">Spearman - Rank</a><br> - when the sample size is small (<20) or when there are influential outliers. - </span> - <SPAN id="lit_r_desc" style="display: none;" class="correlation_desc fs12"> - The <A HREF="/correlationAnnotation.html" TARGET="_blank">Literature Correlation</A> - (Lit r) between - this gene and all other genes is computed<BR> - using the <A HREF="https://grits.eecs.utk.edu/sgo/sgo.html" TARGET="_blank"> - Semantic Gene Organizer</A> - and human, rat, and mouse data from PubMed. <BR> - Values are ranked by Lit r, but Sample r and Tissue r are also displayed.<BR><BR> - <A HREF="/glossary.html#Literature" TARGET="_blank">More on using Lit r</A> - </SPAN> - <SPAN id="tissue_r_desc" style="display: none;" class="correlation_desc fs12"> - The <A HREF="/webqtl/main.py?FormID=tissueCorrelation" TARGET="_blank">Tissue Correlation</A> - (Tissue r) - estimates the similarity of expression of two genes<BR> - or transcripts across different cells, tissues, or organs - (<A HREF="/correlationAnnotation.html#tissue_r" TARGET="_blank">glossary</A>). - Tissue correlations<BR> - are generated by analyzing expression in multiple samples usually taken from single cases.<BR> - <STRONG>Pearson</STRONG> and <STRONG>Spearman Rank</STRONG> correlations have been - computed for all pairs of genes<BR> using data from mouse samples.<BR> - </SPAN> - - <br> - </td> - </tr> - </table> - </div> - </div> - </td> - </tr> - </table> + </div> +</div>
\ No newline at end of file diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index c3abfc9f..b57c3c21 100644 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -19,11 +19,11 @@ BLAT Specifity </a> </dt> - <dd>{{ "%.1f" % (this_trait.probe_set_specificity) }}</dd> + <dd>{{ "%s" % (this_trait.probe_set_specificity) }}</dd> {% endif %} {% if this_trait.probe_set_blat_score %} <dt>BLAT Score</dt> - <dd>{{ "%i" % (this_trait.probe_set_blat_score) }}</dd> + <dd>{{ "%s" % (this_trait.probe_set_blat_score) }}</dd> {% endif %} </dl> diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html index 84196959..c2d5211f 100644 --- a/wqflask/wqflask/templates/show_trait_mapping_tools.html +++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html @@ -41,23 +41,7 @@ <input name="mapping_bootstraps" value="2000" type="text" /> </div> </div> - - - {% if dataset.group.genotype.Mbmap %} - <div class="control-group"> - <label class="control-label">Scale</label> - <div class="controls"> - <label class="radio inline"> - <input type="radio" name="scale" id="scale" value="megabase" checked> - Megabase - </label> - <label class="radio inline"> - <input type="radio" name="scale" id="scale" value="centimorgan"> - Centimorgan - </label> - </div> - </div> - {% endif %} + <div class="control-group"> <label class="control-label"><b>Composite Mapping</b></label> @@ -111,26 +95,24 @@ </div> <div class="tab-pane" id="marker_regression"> - <div class="control-group" id="display_all_lrs"> - <label class="control-label">Display all LRS</label> + <div class="control-group" id="display_all_div"> + <label class="control-label">Display all</label> <div class="controls"> <label class="radio inline"> - <input type="radio" name="display_all_lrs" - id="display_all_lrs" value=True> + <input type="radio" name="display_all" value="True" checked> Yes </label> <label class="radio inline"> - <input type="radio" name="display_all_lrs" - id="display_all_lrs" value=False checked> + <input type="radio" name="display_all" value="False"> No </label> </div> - </div> - <div class="control-group"> - <label for="suggestive_lrs" class="control-label" - title="Control Locus">LRS greater than</label> + </div> + <div class="control-group" id="suggestive" > + <label for="suggestive" class="control-label" + title="Control Locus">LOD score greater than: </label> <div class="controls"> - <input name="suggestive_lrs" id="suggestive_lrs" type="text" /> + <input name="suggestive" type="text" value="0"/> </div> </div> @@ -143,13 +125,14 @@ <div class="control-group"> <div class="controls"> - <button class="btn btn-inverse submit_special" + <button id="marker_regression_compute" + class="btn btn-inverse submit_special" data-url="/marker_regression" title="Compute Marker Regression"> <i class="icon-ok-circle icon-white"></i> Compute </button> </div> - </div> + </div> </div> diff --git a/wqflask/wqflask/templates/show_trait_progress_bar.html b/wqflask/wqflask/templates/show_trait_progress_bar.html new file mode 100644 index 00000000..0c3f0e6e --- /dev/null +++ b/wqflask/wqflask/templates/show_trait_progress_bar.html @@ -0,0 +1,12 @@ +<div id="progress_bar_container" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="progress_bar" aria-hidden="true"> + <div class="modal-header"> + <h3 id="progress_bar">Loading...</h3> + </div> + <div class="modal-body"> + <div class="progress active"> + <div id="marker_regression_progress" class="bar"></div> + </div> + <div id="time_remaining"> + </div> + </div> +</div>
\ No newline at end of file diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py new file mode 100644 index 00000000..b8ebc71f --- /dev/null +++ b/wqflask/wqflask/user_manager.py @@ -0,0 +1,40 @@ +from __future__ import print_function, division, absolute_import + +"""Access things in template like this: + + x: {{ g.identity.name }} + security: {{ security.__dict__ }} + +""" + +from wqflask import model + +from flask import Flask, g + +from pprint import pformat as pf + +#from app import db +print("globals are:", globals()) + + +class UsersManager(object): + def __init__(self): + self.users = model.User.query.all() + print("Users are:", self.users) + + + +class UserManager(object): + def __init__(self, kw): + self.user_id = int(kw['user_id']) + print("In UserManager locals are:", pf(locals())) + #self.user = model.User.get(user_id) + #print("user is:", user) + self.user = model.User.query.get(self.user_id) + print("user is:", self.user) + + +class RolesManager(object): + def __init__(self): + self.roles = model.Role.query.all() + print("Roles are:", self.roles) diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index c9659a83..53deda3b 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -1,39 +1,51 @@ from __future__ import absolute_import, division, print_function +import sys +print("sys.path is:", sys.path) + import csv import StringIO # Todo: Use cStringIO? +import cPickle as pickle + import simplejson as json #import json import yaml +from redis import Redis +Redis = Redis() + import flask import sqlalchemy #import config from wqflask import app -from flask import render_template, request, make_response, Response, Flask, g, config +from flask import render_template, request, make_response, Response, Flask, g, config, jsonify from wqflask import search_results +from base.data_set import DataSet # Used by YAML in marker_regression from wqflask.show_trait import show_trait from wqflask.show_trait import export_trait_data from wqflask.marker_regression import marker_regression -from wqflask.correlation import CorrelationPage +from wqflask.correlation import show_corr_results +from utility import temp_data from wqflask.dataSharing import SharingInfo, SharingInfoPage from base import webqtlFormData +from utility.benchmark import Bench from pprint import pformat as pf +from wqflask import user_manager + #import logging #logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO) #_log = logging.getLogger("correlation") @app.before_request def connect_db(): - print("blue app.config:", app.config, pf(vars(app.config))) g.db = sqlalchemy.create_engine(app.config['DB_URI']) @app.route("/") @@ -57,7 +69,7 @@ def data_sharing_page(): htmlfilelist=htmlfilelist) -@app.route("/search") +@app.route("/search", methods=('POST',)) def search_page(): print("in search_page") if 'info_database' in request.args: @@ -69,14 +81,29 @@ def search_page(): else: return render_template("data_sharing.html", **template_vars.__dict__) else: - print("calling search_results.SearchResultPage") - the_search = search_results.SearchResultPage(request.args) - print("template_vars is:", pf(the_search.__dict__)) - #print("trait_list is:", pf(the_search.__dict__['trait_list'][0].__dict__)) - #for trait in the_search.trait_list: - # print(" -", trait.description_display) - - return render_template("search_result_page.html", **the_search.__dict__) + key = "search_results:v2:" + json.dumps(request.args, sort_keys=True) + print("key is:", pf(key)) + with Bench("Loading cache"): + result = Redis.get(key) + + if result: + print("Cache hit!!!") + with Bench("Loading results"): + result = pickle.loads(result) + else: + print("calling search_results.SearchResultPage") + print("request.args is", request.args) + the_search = search_results.SearchResultPage(request.args) + result = the_search.__dict__ + + print("result: ", pf(result)) + Redis.set(key, pickle.dumps(result)) + Redis.expire(key, 60*60) + + if result['quick']: + return render_template("quick_search.html", **result) + else: + return render_template("search_result_page.html", **result) @app.route("/whats_new") @@ -136,33 +163,74 @@ def show_trait_page(): #fd = webqtlFormData.webqtlFormData(request.args) #print("stp y1:", pf(vars(fd))) template_vars = show_trait.ShowTrait(request.args) - print("js_data before dump:", template_vars.js_data) + #print("js_data before dump:", template_vars.js_data) template_vars.js_data = json.dumps(template_vars.js_data, default=json_default_handler, indent=" ") # Sorting the keys messes up the ordered dictionary, so don't do that #sort_keys=True) - print("js_data after dump:", template_vars.js_data) - print("show_trait template_vars:", pf(template_vars.__dict__)) + #print("js_data after dump:", template_vars.js_data) + #print("show_trait template_vars:", pf(template_vars.__dict__)) return render_template("show_trait.html", **template_vars.__dict__) @app.route("/marker_regression", methods=('POST',)) def marker_regression_page(): - template_vars = marker_regression.MarkerRegression(request.form) - #print("js_data before dump:", template_vars.js_data) - template_vars.js_data = json.dumps(template_vars.js_data, - default=json_default_handler, - indent=" ") - print("[dub] js_data after dump:", template_vars.js_data) - #print("marker_regression template_vars:", pf(template_vars.__dict__)) - return render_template("marker_regression.html", **template_vars.__dict__) + initial_start_vars = request.form + temp_uuid = initial_start_vars['temp_uuid'] + wanted = ( + 'trait_id', + 'dataset', + 'suggestive' + ) + + start_vars = {} + for key, value in initial_start_vars.iteritems(): + if key in wanted or key.startswith(('value:')): + start_vars[key] = value + + version = "v14" + key = "marker_regression:{}:".format(version) + json.dumps(start_vars, sort_keys=True) + print("key is:", pf(key)) + with Bench("Loading cache"): + result = Redis.get(key) + + #print("************************ Starting result *****************") + #print("result is [{}]: {}".format(type(result), result)) + #print("************************ Ending result ********************") + + if result: + print("Cache hit!!!") + with Bench("Loading results"): + result = pickle.loads(result) + else: + print("Cache miss!!!") + template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid) + + template_vars.js_data = json.dumps(template_vars.js_data, + default=json_default_handler, + indent=" ") + + result = template_vars.__dict__ + + #for item in template_vars.__dict__.keys(): + # print(" ---**--- {}: {}".format(type(template_vars.__dict__[item]), item)) + + #causeerror + Redis.set(key, pickle.dumps(result)) + Redis.expire(key, 60*60) + + with Bench("Rendering template"): + rendered_template = render_template("marker_regression.html", **result) + + return rendered_template + @app.route("/corr_compute", methods=('POST',)) def corr_compute_page(): - print("In corr_compute, request.args is:", pf(request.form)) - fd = webqtlFormData.webqtlFormData(request.form) - template_vars = CorrelationPage.CorrelationPage(fd) + print("In corr_compute, request.form is:", pf(request.form)) + #fd = webqtlFormData.webqtlFormData(request.form) + template_vars = show_corr_results.CorrelationResults(request.form) return render_template("correlation_page.html", **template_vars.__dict__) @app.route("/int_mapping", methods=('POST',)) @@ -179,6 +247,22 @@ def sharing_info_page(): return template_vars +@app.route("/get_temp_data") +def get_temp_data(): + temp_uuid = request.args['key'] + return flask.jsonify(temp_data.TempData(temp_uuid).get_all()) + +@app.route("/manage/users") +def manage_users(): + template_vars = user_manager.UsersManager() + return render_template("admin/user_manager.html", **template_vars.__dict__) + +@app.route("/manage/user") +def manage_user(): + template_vars = user_manager.UserManager(request.args) + return render_template("admin/ind_user_manager.html", **template_vars.__dict__) + + def json_default_handler(obj): '''Based on http://stackoverflow.com/a/2680060/1175849''' # Handle datestamps |
