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-rw-r--r--wqflask/base/webqtlConfig.py1
-rw-r--r--wqflask/wqflask/static/new/css/show_trait.css4
-rw-r--r--wqflask/wqflask/templates/search_result_page.html46
3 files changed, 32 insertions, 19 deletions
diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py
index 018d5d54..55407123 100644
--- a/wqflask/base/webqtlConfig.py
+++ b/wqflask/base/webqtlConfig.py
@@ -58,6 +58,7 @@ PROTEIN_ATLAS_URL = "http://www.proteinatlas.org/search/%s"
OPEN_TARGETS_URL = "https://genetics.opentargets.org/gene/%s"
UNIPROT_URL = "https://www.uniprot.org/uniprot/%s"
RGD_URL = "https://rgd.mcw.edu/rgdweb/elasticResults.html?term=%s&category=Gene&species=%s"
+PHENOGEN_URL = "https://phenogen.org/gene.jsp?speciesCB=Rn&auto=Y&geneTxt=%s&genomeVer=rn6&section=geneEQTL"
# Temporary storage (note that this TMPDIR can be set as an
# environment variable - use utility.tools.TEMPDIR when you
diff --git a/wqflask/wqflask/static/new/css/show_trait.css b/wqflask/wqflask/static/new/css/show_trait.css
index 09d5e1e3..a0e84474 100644
--- a/wqflask/wqflask/static/new/css/show_trait.css
+++ b/wqflask/wqflask/static/new/css/show_trait.css
@@ -2,6 +2,10 @@ tr .outlier {
background-color: #ffff99;
}
+table.dataTable tbody tr.selected {
+ background-color: #ffff00
+}
+
#bar_chart_container {
overflow-x:scroll;
}
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 89ca6681..b238a28a 100644
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -8,7 +8,7 @@
{% endblock %}
{% block content %}
<!-- Start of body -->
- <div style="padding-left: 10px;">
+ <div style="padding-left: 10px;>
<input type="hidden" name="uc_id" id="uc_id" value="{{ uc_id }}">
<div style="padding-top: 10px; padding-bottom: 10px; font-size: 16px;">
@@ -59,7 +59,7 @@
</div>
- <div>
+ <div style="min-width: 950px;">
<form id="trait_submission_form" target="_blank" action="/corr_matrix" method="post">
<input type="hidden" name="tool_used" value="" />
<input type="hidden" name="form_url" value="" />
@@ -111,29 +111,34 @@
<div>
<br />
<form id="export_form" method="POST" action="/export_traits_csv" style="display: inline;">
- <input type="hidden" name="headers" id="headers" value="{% for field in header_fields %}{{ field }},{% endfor %}">
- <input type="hidden" name="search_string" id="search_string" value="{{ original_search_string }}">
- <input type="hidden" name="database_name" id="database_name" value="{{ dataset.fullname }}">
- <input type="hidden" name="file_name" id="file_name" value="search_results">
- <input type="hidden" name="filter_term" id="filter_term" value="None">
- {% if dataset.accession_id is defined %}
- <input type="hidden" name="accession_id" id="accession_id" value="{{ dataset.accession_id }}">
- {% endif %}
- <input type="hidden" name="export_data" id="export_data" value="">
- <button class="btn btn-default" id="select_all" type="button"><span class="glyphicon glyphicon-ok"></span> Select</button>
- <button class="btn btn-default" id="add" type="button" disabled><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
- <button class="btn btn-default" id="export_traits">Download CSV</button>
- <input type="text" id="searchbox" class="form-control" style="width: 200px; display: inline;" placeholder="Search This Table For ...">
- <input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
- <button class="btn btn-default" id="deselect_all" type="button"><span class="glyphicon glyphicon-remove"></span> Deselect</button>
+ <div style="min-width: 950px;">
+ <input type="hidden" name="headers" id="headers" value="{% for field in header_fields %}{{ field }},{% endfor %}">
+ <input type="hidden" name="search_string" id="search_string" value="{{ original_search_string }}">
+ <input type="hidden" name="database_name" id="database_name" value="{{ dataset.fullname }}">
+ <input type="hidden" name="file_name" id="file_name" value="search_results">
+ <input type="hidden" name="filter_term" id="filter_term" value="None">
+ {% if dataset.accession_id is defined %}
+ <input type="hidden" name="accession_id" id="accession_id" value="{{ dataset.accession_id }}">
+ {% endif %}
+ <input type="hidden" name="export_data" id="export_data" value="">
+ <button class="btn btn-default" id="select_all" type="button"><span class="glyphicon glyphicon-ok"></span> Select</button>
+ <button class="btn btn-default" id="add" type="button" disabled><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
+ <button class="btn btn-default" id="export_traits">Download CSV</button>
+ <input type="text" id="searchbox" class="form-control" style="width: 200px; display: inline;" placeholder="Search This Table For ...">
+ <input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
+ <button class="btn btn-default" id="deselect_all" type="button"><span class="glyphicon glyphicon-remove"></span> Deselect</button>
+ </div>
</form>
<br />
+ {% if dataset.type != 'Geno' %}
<br />
<div style="margin-bottom: 5px;">
<b>Show/Hide Columns:</b>
</div>
+ {% endif %}
+ <!--<div id="table_container" style="min-width: {% if dataset.type == 'ProbeSet' or dataset.type == 'Publish' %}2000{% else %}380{% endif %}px;">-->
<div id="table_container">
- <table class="table-hover table-striped cell-border" id='trait_table' style="max-width: {% if dataset.type == 'ProbeSet' or dataset.type == 'Publish' %}2000{% else %}380{% endif %}px; float: left;">
+ <table class="table-hover table-striped cell-border" id='trait_table' style="float: left; width: {% if dataset.type == 'Geno' %}380px{% else %}100%{% endif %};">
<tbody>
<td colspan="100%" align="center"><br><b><font size="15">Loading...</font></b><br></td>
</tbody>
@@ -341,7 +346,6 @@
{
'title': "Description",
'type': "natural",
- 'width': "800px",
'data': null,
'render': function(data, type, row, meta) {
try {
@@ -420,6 +424,7 @@
}{% endif %}
],
"order": [[1, "asc" ]],
+ {% if dataset.type != 'Geno' %}
buttons: [
{
extend: 'columnsToggle',
@@ -434,6 +439,9 @@
}
],
'sDom': "Bitir",
+ {% else %}
+ 'sDom': "itir",
+ {% endif %}
'deferRender': true,
'paging': false,
'orderClasses': true,
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 06:45:08 +0000