aboutsummaryrefslogtreecommitdiff
path: root/wqflask
diff options
context:
space:
mode:
Diffstat (limited to 'wqflask')
-rwxr-xr-xwqflask/wqflask/do_search.py14
-rwxr-xr-xwqflask/wqflask/search_results.py7
2 files changed, 17 insertions, 4 deletions
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py
index 9e88215a..90d88a5a 100755
--- a/wqflask/wqflask/do_search.py
+++ b/wqflask/wqflask/do_search.py
@@ -595,6 +595,7 @@ class MrnaLrsSearch(LrsSearch, MrnaAssaySearch):
self.from_clause = self.get_from_clause()
self.where_clause = self.get_where_clause()
+
self.query = self.compile_final_query(from_clause = self.from_clause, where_clause = self.where_clause)
return self.execute(self.query)
@@ -607,6 +608,7 @@ class PhenotypeLrsSearch(LrsSearch, PhenotypeSearch):
self.from_clause = self.get_from_clause()
self.where_clause = self.get_where_clause()
+
self.query = self.compile_final_query(from_clause = self.from_clause, where_clause = self.where_clause)
return self.execute(self.query)
@@ -614,7 +616,7 @@ class PhenotypeLrsSearch(LrsSearch, PhenotypeSearch):
class CisTransLrsSearch(DoSearch):
def get_from_clause(self):
- return ", Geno "
+ return ", Geno"
def get_where_clause(self, cis_trans):
self.search_term = [float(value) for value in self.search_term]
@@ -699,9 +701,12 @@ class CisLrsSearch(CisTransLrsSearch, MrnaAssaySearch):
DoSearch.search_types['ProbeSet_CISLRS'] = 'CisLrsSearch'
+ def get_where_clause(self):
+ return CisTransLrsSearch.get_where_clause(self, "cis")
+
def run(self):
self.from_clause = self.get_from_clause()
- self.where_clause = self.get_where_clause("cis")
+ self.where_clause = self.get_where_clause()
self.query = self.compile_final_query(self.from_clause, self.where_clause)
@@ -725,9 +730,12 @@ class TransLrsSearch(CisTransLrsSearch, MrnaAssaySearch):
DoSearch.search_types['ProbeSet_TRANSLRS'] = 'TransLrsSearch'
+ def get_where_clause(self):
+ return CisTransLrsSearch.get_where_clause(self, "trans")
+
def run(self):
self.from_clause = self.get_from_clause()
- self.where_clause = self.get_where_clause("trans")
+ self.where_clause = self.get_where_clause()
self.query = self.compile_final_query(self.from_clause, self.where_clause)
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index 2e0299f2..8d857fb4 100755
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -222,12 +222,17 @@ class SearchResultPage(object):
if len(self.search_terms) > 1:
combined_from_clause = ""
combined_where_clause = ""
+ previous_from_clauses = [] #The same table can't be referenced twice in the from clause
for i, a_search in enumerate(self.search_terms):
the_search = self.get_search_ob(a_search)
get_from_clause = getattr(the_search, "get_from_clause", None)
if callable(get_from_clause):
from_clause = the_search.get_from_clause()
- combined_from_clause += from_clause
+ if from_clause in previous_from_clauses:
+ pass
+ else:
+ previous_from_clauses.append(from_clause)
+ combined_from_clause += from_clause
where_clause = the_search.get_where_clause()
combined_where_clause += "(" + where_clause + ")"
if (i+1) < len(self.search_terms):